| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3059857 | 40 (0.770) | 6 (0.120) | 4/250 | NT | 14.0% | coding (1136/1275 nt) | PP_2671 | sensor histidine kinase |
| ? | NC_002947 | = 3059911 | 36 (0.740) | coding (1190/1275 nt) | PP_2671 | sensor histidine kinase | |||||
GCTGCCTGGGCCGAGCAGAACGCATTTGTACCGCTTGCTGCAGGAGGCGTTGACCAACGTCGCCCGGCATGCCGGTGCCAGCCAGGTGCGGGTGCGCCTGCAGCGCAGTCCCAAGGGCTTGCGCCTGTTCATTCGCGACAATGGCTGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3059708‑3059857‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctgcggGCGCGCTCGGCCATCGAGTGCAGGCCTACCCCTGGGCGCTGGGGCTGGTGGGCGCCGCAGC < NC_002947/3059911‑3059851 GCTGCCTGGGCCGAGCAGAACGCATTTGTACCGCTTGCTGCAGGAGGCGTTGACCAACGTCGCCCGGCATGCCGGTGCCAGCCAGGTGCGGGTGCGCCTGCAGCGCAGTCCCAAGGGCTTGCGCCTGTTCATTCGCGACAATGGCTGCG < 7:194818/149‑1 CTTGCTGCAGGAGGCGTTGACCAACGTCGCCCGGCATGCCGGTGCCAGCCAGGTGCGGGTGCGCCTGCAGCGCAGTCCCAAGGGCTTGCGCCTGTTCATTCGCGACAATGGCTGCGG < 3:144100/117‑1 CTTGCTGCAGGAGGCGTTGACCAACGTCGCCCGGCATGCCGGTGCCAGCCAGGTGCGGGTGCGCCTGCAGCGCAGTCCCAAGGGCTTGCGCCTGTTCATTCGCGACAATGGCTGCGG > 4:144100/1‑117 CAGGAGGCGTTGACCAACGTCGCCCGGCATGCCGGTGCCAGCCAGGTGCGGGTGCGCCTGCAGCGCAGTCCCAAGGGCTTGCGCCTGTTCATTCGCGACAATGGCTGCGGGCGCGCTCGGCCATCGAGTGCAGGCCTACCCCTGGGCGC > 7:55597/1‑149 CAGGAGGCGTTGACCAACGTCGCCCGGCATGCCGGTGCCAGCCAGGTGCGGGTGCGCCTGCAGCGCAGTCCCAAGGGCTTGCGCCTGTTCATTCGCGACAATGGCTGCGGGCGCGCTCGGCCATCGAGTGCAGGCCTACCCCTGGGCGC > 7:59976/1‑149 CCCGGCATGCCGGTGCCAGCCAGGTGCGGGTGCGCCTGCAGCGCAGTCCCAAGGGCTTGCGCCTGTTCATTCGCGACAATGGCTGCGGGCGCGCTCGGCCATCGAGTGCAGGCCTACCCCTGGGCGCTGGGGCTGGTGGGCGCCGCAGC < 8:55597/149‑1 CCCGGCATGCCGGTGCCAGCCAGGTGCGGGTGCGCCTGCAGCGCAGTCCCAAGGGCTTGCGCCTGTTCATTCGCGACAATGGCTGCGGGCGCGCTCGGCCATCGAGTGCAGGCCTACCCCTGGGCGCTGGGGCTGGTGGGCGCCGCAGC < 8:59976/149‑1 CCGGTGCCAGCCAGGTGCGGGTGCGCCTGCAGCGCAGTCCCAAGGGCTTGCGCCTGTTCATTCGCGACAATGGCTGCGGGCGCGCTCGGCCATCGAGTGCAGGCCTACCCCTGGGCGCTGGGGCTGGTGGGCGCCGCAG > 7:259468/1‑139 CCGGTGCCAGCCAGGTGCGGGTGCGCCTGCAGCGCAGTCCCAAGGGCTTGCGCCTGTTCATTCGCGACAATGGCTGCGGGCGCGCTCGGCCATCGAGTGCAGGCCTACCCCTGGGCGCTGGGGCTGGTGGGCGCCGCAG < 8:259468/139‑1 GCTGCCTGGGCCGAGCAGAACGCATTTGTACCGCTTGCTGCAGGAGGCGTTGACCAACGTCGCCCGGCATGCCGGTGCCAGCCAGGTGCGGGTGCGCCTGCAGCGCAGTCCCAAGGGCTTGCGCCTGTTCATTCGCGACAATGGCTGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3059708‑3059857‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctgcggGCGCGCTCGGCCATCGAGTGCAGGCCTACCCCTGGGCGCTGGGGCTGGTGGGCGCCGCAGC < NC_002947/3059911‑3059851 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |