New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3059857	40 (0.770)	6 (0.120)	4/250	NT	14.0%	coding (1136/1275 nt)	PP_2671	sensor histidine kinase
	?	NC_002947	= 3059911	36 (0.740)					coding (1190/1275 nt)	PP_2671	sensor histidine kinase

GCATGCCGGTGCCAGCCAGGTGCGGGTGCGCCTGCAGCGCAGTCCCAAGGGCTTGCGCCTGTTCATTCGCGACAATGGCTGCGGCGCCCACCAGCCCCAGCGCCCAGGGGTAGGCCTGCACTCGATGGCCGAGCGCGCCCGCAGCCTTGGGGGGGAGTTACGCATTTTCAGCCGCCCTGGAGGCGGCTGGGCGCTGGCCCTTAACATTCCCCAGGAGGTGTGATGAATATCGTGTTGGTCGATGACCACGCCGTGGTCCGCCAGGGCTACGCCA  >  NC_002947/3059774‑3060047                                                                                                                                          |                                                                                                                                         gCATGCCGGTGCCAGCCAGGTGCGGGTGCGCCTGCAGCGCAGTCCCAAGGGCTTGCGCCTGTTCATTCGCGACAATGGCTGCGGCGCCCACCAGCCCCAGCGCCCAGGGGTAGGCCTGCACTCGATGTCCGAGCGCGCCCGCAGCCTTg                                                                                                                               <  4:122879/149‑1 (MQ=255)  cATGCCGGTGCCAGCCAGGTGCGGGTGCGCCTGCAGCGCAGTCCCAAGGGCTTGCGCCTGTTCATTCGCGACAATGGCTGCGGCGCCCACCAGCCCCAGCGCCCAGGGGTAGGCCTGCACTCGATGGCCGAGCGCGCCCGCAGCCTTgg                                                                                                                              <  5:130727/149‑1 (MQ=255)   aTGCCGGTGCCAGCCAGGTGCGGGTGCGCCTGCAGCGCAGTCCCAAGGGCTTGCGCCTGTTCATTCGCGACAATGGCTGCGGCGCCCACCAGCCCCAGCGCCCAGGGGTAGGCCTGCACTCGATGGCCGAGCGCGCCCGCAGCCTTggg                                                                                                                             <  1:322065/149‑1 (MQ=255)     gCCGGTGCCAGCCAGGTGCGGGTGCGCCTGCAGCGCAGTCCCAAGGGCTTGCGCCTGTTCATTCGCGACAATGGCTGCGGCGCCCACCAGCCCCAGCGCCCAGGGGTAGGCCTGCACTCGATGGCCGAGCGCGCCCGCAGCCTTggggg                                                                                                                           >  1:111680/1‑149 (MQ=255)      ccGGTGCCAGCCAGGGGCGGGTGCGCCTGCAGCGCAGTCCCAAGGGCTTGCGCCTGTTCATTCGCGACAATGGCTGCGTCGCCCACCAGCCCCAGCGCCCAGGGGTAGTCCTGCACTCGATGGCCGAGCGCGCCCGCAGCCTTgggggg                                                                                                                          <  6:71351/149‑1 (MQ=255)        ggTGCCAGCCAGGTGCGGGTGCGCCTGCAGCGCAGTCCCAAGGGCTTGCGCCTGTTCATTCGCGACAATGGCTGCGGCGCCCACCAGCCCCAGCGCCCAGGGGTAGGCCTGCACTCGATGGCCGAGCGCGCCCGCAGCCTTGGGGGGGa                                                                                                                        <  8:300510/149‑1 (MQ=255)            ccagccagGTGCGGGTGCGCCTGCAGCGCAGTCCCAAGGGCTTGCGCCTGTTCATTCGCGACAATGGCTGCGGCGCCCACCAGCCCCAGCGCCCAGGGGTAGGCCTGCACTCGATGGCCGAGCGCGCCCGCAGCCTTGGGGGGGa                                                                                                                        >  1:91165/1‑145 (MQ=255)            ccagccagGTGCGGGTGCGCCTGCAGCGCAGTCCCAAGGGCTTGCGCCTGTTCATTCGCGACAATGGCTGCGGCGCCCACCAGCCCCAGCGCCCAGGGGTAGGCCTGCACTCGATGGCCGAGCGCGCCCGCAGCCTTGGGGGGGa                                                                                                                        <  2:91165/145‑1 (MQ=255)            ccagccagGTGCGGGTGCGCCTGCAGCGCAGTCCCAAGGGCTTGCGCCTGTTCATTCGCGACAATGGCTGCGGCGCCCACCAGCCCCAGCGCCCAGGGGTAGGCCTGCACTCGATGGCCGAGCGCGCCCGCAGCCTTGGGGGGGAGTTa                                                                                                                    <  3:39751/149‑1 (MQ=255)              agccagGTGCGGGTGCGCCTGCAGCGCAGTCCCAAGGGCTTGCGCCTGTTCATTCGCGACAATGGCTGCGGCGCCCACCAGCCCCAGCGCCCAGGGGTAGGCCTGCACTCGATGGCCGAGCGCGCCCGCAGCCTTGGGGGGGAGTTACg                                                                                                                  >  1:119256/1‑149 (MQ=255)              agccagGTGCGGGTGCGCCTGCAGCGCAGTCCCAAGGGCTTGCGCCTGTTCATTCGCGACAATGGCTGCGGCGCCCACCAGCCCCAGCGCCCAGGGGTAGGCCTGCACTCGATGGCCGAGCGCGCCCGCAGCCTTGGGGGGGAGTTACg                                                                                                                  >  7:214305/1‑149 (MQ=255)              agccagGTGCGGGTGCGCCTGCAGCGCAGTCCCAAGGGCTTGCGCCTGTTCATTCGCGACAATGGCTGCGGCGCCCACCAGCCCCAGCGCCCAGGGGTAGGCCTGCACTCGATGGCCGAGCGCGCCCGCAGCCTTGGGGGGGAGTTACg                                                                                                                  >  5:31283/1‑149 (MQ=255)              agccagGTGCGGGTGCGCCTGCAGCGCAGTCCCAAGGGCTTGCGCCTGTTCATTCGCGACAATGGCTGCGGCGCCCACCAGCCCCAGCGCCCAGGGGTAGGCCTGCACTCGATGGCCGAGCGCGCCCGCAGCCTTGGGGGGGAGTTACg                                                                                                                  >  2:136080/1‑149 (MQ=255)               gccagGTGCGGGTGCGCCTGCAGCGCAGTCCCAAGGGCTTGCGCCTGTTCATTCGCGACAATGGCTGCGGCGCCCACCAGCCCCAGCGCCCAGGGGTAGGCCTGCACTCGATGGCCGAGCGCGCCCGCAGCCTTGGGGGGGAGTTACGc                                                                                                                 <  5:50013/149‑1 (MQ=255)                       cgggtgcgCCTGCAGCGCAGTCCCAAGGGCTTGCGCCTGTTCATTCGCGACAATGGCTGCGGCGCCCACCAGCCCCAGCGCCCAGGGGTAGGCCTGCACTCGATGGCCGAGCGCGCCCGCAGCCTTGGGGGGGAGTTACGCATTTTCa                                                                                                          <  3:271051/148‑1 (MQ=255)                          gtgcgCCTGCAGCGCAGTCCCAAGGGCTTGCGCCTGTTCATTCGCGACAATGGCTGCGGCGCCCACCAGCCCCAGCGCCCAGGGGTAGGCCTGCACTCGATGGCCGAGCGCGCCCGCAGCCTTGGGGGGGAGTTACGCATTTTCAgccg                                                                                                      >  1:118509/1‑149 (MQ=255)                           tgcgCCTGCAGCGCAGTCCCAAGGGCTTGCGCCTGTTCATTCGCGACAATGGCTGCGGCGCCCACCAGCCCCAGCGCCCAGGGGTAGGCCTGCACTCGATGGCCGAGCGCGCCCGCAGCCTTGGGGGGGAGTTACGCATTTTCAgccgc                                                                                                     <  1:155079/149‑1 (MQ=255)                                       gcAGTCCCAAGGGCTTGCGCCTGTTCATTCGCGACAATGGCTGCGGCGCCCACCAGCCCCAGCGCCCAGGGGTAGGCCTGCACTCGATGGCCGAGCGCGCCCGCAGCCTTGGGGGGGAGTTACGCATTTTCAGCCGCCCTGGAggcggc                                                                                         <  8:214305/149‑1 (MQ=255)                                          gTCCCAAGGGCTTGCGCCTGTTCATTCGCGACAATGGCTGCGGCGCCCACCAGCCCCAGCGCCCAGGGGTAGGCCTGCACTCGATGGCCGAGCGCGCCCGCAGCCTTGGGGGGGAGTTACGCATTTTCAGCCGCCCTGGAGGCGGCTgg                                                                                      <  2:118509/149‑1 (MQ=255)                                                     ttGCGCCTGTTCATTCGCGACAATGGCTGCGGCGCCCACCAGCCCCAGCGCCCAGGGGTAGGCCTGCACTCGATGGCCGAGCGCGCCCGCAGCCTTGGGGGGGAGTTACGCATTTTCAGCCGCCCTGGAGGCGGCTGGGCGCTGGCCCt                                                                           >  6:149528/1‑149 (MQ=255)                                                      tGCGCCTGTTCATTCGCGACAATGGCTGCGGCGCCCACCAGCCCCAGCGCCCAGGGGTAGGCCTGCACTCGATGGCCGAGCGCGCCCGCAGCCTTGGGGGGGAGTTACGCATTTTCAGCCGCCCTGGAGGCGGCTGGGCGCTGGCCCt                                                                           >  2:238142/1‑148 (MQ=255)                                                         gcCTGTTCATTCGCGACAATGGCTGCGGCGCCCACCAGCCCCAGCGCCCAGGGGTAGGCCTGCACTCGATGGCCGAGCGCGCCCGCAGCCTTGGGGGGGAGTTACGCATTTTCAGCCGCCCTGGAGGCGGCTGGGCGCTGGCCCTTaa                                                                        >  6:90084/1‑148 (MQ=255)                                                           cTGTTCATTCGCGACAATGGCTGCGGCGCCCACCAGCCCCAGCGCCCAGGGGTAGGCCTGCACTCGATGGCCGAGCGCGCCCGCAGCCTTGGGGGGGAGTTACGCATTTTCAGCCGCCCTGGAGGCGGCTGGGCGCTGGCCCTTAACAt                                                                     >  2:277442/1‑149 (MQ=255)                                                              ttCATTCGCGACAATGGCTGCGGCGCCCACCAGCCCCAGCGCCCAGGGGTAGGCCTGCACTCGATGGCCGAGCGCGCCCGCAGCCTTGGGGGGGAGTTACGCATTTTCAGCCGCCCTGGAGGCGGCTGGGCGCTGGCCCTTAACATTc                                                                   <  6:31283/148‑1 (MQ=255)                                                                       gACAATGGCTGCGGCGCCCACCAGCCCCAGCGCCCAGGGGTAGGCCTGCACTCGATGGCCGAGCGCGCCCGCAGCCTTGGGGGGGAGTTACGCATTTTCAGCCGCCCTGGAGGCGGCTGGGCGCTGGCCCTTAACATTCCCCAGGAGgt                                                         <  1:238142/149‑1 (MQ=255)                                                                           aTGGCTGCGGCGCCCACCAGCCCCAGCGCCCAGGGGTAGGCCTGCACTCGATGGCCGAGCGCGCCCGCAGCCTTGGGGGGGAGTTACGCATTTTCAGCCGCCCTGGAGGCGGCTGGGCGCTGGCCCTTAACATTCCCCAGGAGGTGtga                                                     <  1:277442/149‑1 (MQ=255)                                                                            tGGCTGCGGCGCCCACCAGCCCCAGCGCCCAGGGGTAGGCCTGCACTCGATGGCCGAGCGCGCCCGCAGCCTTGGGGGGGAGTTACGCATTTTCAGCCGCCCTGGAGGCGGCTGGGCGCTGGCCCTTAACATTCCCCAGGAGGTGtgat                                                    <  3:259760/149‑1 (MQ=255)                                                                              gCTGCGGCGCCCACCAGCCCCAGCGCCCAGGGGTAGGCCTGCACTCGATGGCCGAGCGCGCccgcagccattgtcgcgaatgaacaggcgcaagcccttgggactgcgctgcaggcgcacccgcacctggctggcaccggcatgccggg                                                  <  8:59976‑M2/149‑89 (MQ=255)                                                                              gCTGCGGCGCCCACCAGCCCCAGCGCCCAGGGGTAGGCCTGCACTCGATGGCCGAGCGCGCccgcagccattgtcgcgaatgaacaggcgcaagcccttgggactgcgctgcaggcgcacccgcacctggctggcaccggcatgccggg                                                  <  8:55597‑M2/149‑89 (MQ=255)                                                                               cTGCGGCGCCCACCAGCCCCAGCGCCCAGGGGTAGGCCTGCACTCGATGGCCGAGCGCGCccgcagccattgtcgcgaatgaacaggcgcaagcccttgggactgcgctgcaggcgcacccgcacctggctggcaccgg                                                           >  7:259468‑M2/1‑60 (MQ=255)                                                                               cTGCGGCGCCCACCAGCCCCAGCGCCCAGGGGTAGGCCTGCACTCGATGGCCGAGCGCGCccgcagccattgtcgcgaatgaacaggcgcaagcccttgggactgcgctgcaggcgcacccgcacctggctggcaccgg                                                           <  8:259468‑M2/139‑80 (MQ=255)                                                                               cTGCGGCGCCCACCAGCCCCAGCGCCCAGGGGTAGGCCTGCACTCGATGGCCGAGCGCGCCCGCAGCCTTGGGGGGGAGTTACGCATTTTCAGCCGCCCTGGAGGCGGCTGGGCGCTGGCCCTTAACATTCCCCAGGAGGTGTGATGaa                                                 >  8:198542/1‑149 (MQ=255)                                                                                       cccACCAGCCCCAGCGCCCAGGGGTAGGCCTGCACTCGATGGCCGAGCGCGCCCGCAGCCTTGGGGGGGAGTTACGCATTTTCAGCCGCCCTGGAGGCGGCTGGGCGCTGGCCCTTAACATTCCCCAGGAGGTGTGATGAATATCgtgt                                         <  2:111680/149‑1 (MQ=255)                                                                                               ccccAGCGCCCAGGGGTAGGCCTGCACTCGATGGCCGAGCGCGCCCTCAGCCTTGGGGGGGAGTTACGCATTTTCAGCCGCCCTGGAGGCGGCTGGGCGCTGGCCCTTAACATTCCCCAGGAGGTGTGATGAATATCGTGTTGGTCGAt                                 <  1:136080/149‑1 (MQ=255)                                                                                                cccAGCGCCCAGGGGTAGGCCTGCACTCGATGGCCGAGCGCGCCCGCAGCCTTGGGGGGGAGTTACGCATTTTCAGCCGCCCTGGAGGCGGCTGGGCGCTGGCCCTTAACATTCCCCAGGAGGTGTGATGAATATCGTGTTGGTCGATg                                >  3:185984/1‑149 (MQ=255)                                                                                                 ccAGCGCCCAGGGGTAGGCCTGCACTCGATGGCCGAGCGCGCCCGCAGCCTTGGGGGGGAGTTACGCATTTTCAGCCGCCCTGGAGGCGGCTGGGCGCTGGCCCTTAACATTCCCCAGGAGGTGTGATGAATATCg                                            >  4:228050/1‑136 (MQ=255)                                                                                                 ccAGCGCCCAGGGGTAGGCCTGCACTCGATGGCCGAGCGCGCCCGCAGCCTTGGGGGGGAGTTACGCATTTTCAGCCGCCCTGGAGGCGGCTGGGCGCTGGCCCTTAACATTCCCCAGGAGGTGTGATGAATATCg                                            <  3:228050/136‑1 (MQ=255)                                                                                                  cAGCGCCCAGGGGTAGGCCTGCACTCGATGGCCGAGCGCGCCCGCAGCCTTGGGGGGGAGTTACGCATTTTCAGCCGCCCTGGAGGCGGCTGGGCGCTGGCCCTTAACATTCCCCAGGAGGTGtgatg                                                   <  5:69094/128‑1 (MQ=255)                                                                                                  cAGCGCCCAGGGGTAGGCCTGCACTCGATGGCCGAGCGCGCCCGCAGCCTTGGGGGGGAGTTACGCATTTTCAGCCGCCCTGGAGGCGGCTGGGCGCTGGCCCTTAACATTCCCCAGGAGGTGtgatg                                                   >  6:69094/1‑128 (MQ=255)                                                                                                  cAGCGCCCAGGGGTAGGCCTGCACTCGATGGCCGAGCGCGCCCGCAGCCTTGGGGGGGAGTTACGCATTTTCAGCCGCCCTGGAGGCGGCTGGGCGCTGGCCCTTAACATTCCCCAGGAGGTGTGATGAATATCGTGTTGGTCGATGAc                              <  4:185984/149‑1 (MQ=255)                                                                                                    gcgcCCAGGGGTAGGCCTGCACTCGATGGCCGAGCGCGCccgcagccattgtcgcgaatgaacaggcgcaagcccttgggactgcgctgcaggcgcacccgcacctggctggcaccggcatgccgggcgacgttggtcaacgcctcctg                            >  7:55597‑M2/1‑39 (MQ=255)                                                                                                    gcgcCCAGGGGTAGGCCTGCACTCGATGGCCGAGCGCGCccgcagccattgtcgcgaatgaacaggcgcaagcccttgggactgcgctgcaggcgcacccgcacctggctggcaccggcatgccgggcgacgttggtcaacgcctcctg                            >  7:59976‑M2/1‑39 (MQ=255)                                                                                                                  gCCTGCACTCGATGGCCGAGCGCGCCCGCAGCCTTGGGGGGGAGTTACGCATTTTCAGCCGCCCTGGAGGCGGCTGGGCGCTGGCCCTTAACATTCCCCAGGAGGTGTGATGAATATCGTGTTGGTCGATGACCACGCCGAGGTCCGc               >  2:99227/1‑148 (MQ=255)                                                                                                                  gCCTGCACTCGATGGCCGAGCGCGCCCGCAGCCTT‑GGGGGGAGTTACGCATTTTCAGCCGCCCTGGAGGCGGCTGGGCGCTGGCCCTTAACATTCCCCAGGAGGCGTGATGAATATCGTGTTGGTCGATGACCACGCCGTGGTCCGCCa             >  1:98717/1‑149 (MQ=255)                                                                                                                              tGGCCGAGCGCGCCCGCAGCCTTGGGGGGGAGTTACGCATTTTCAGCCGCCCTGGAGGCGGCTGGGCGCTGGCCCTTAACATTCCCCAGGAGGTGTGATGAATATCGTGTTGGTCGATGACCACGCCGTGGTCCGCCAGGGCTACGCCa  <  2:119256/149‑1 (MQ=255)                                                                                                                                          |                                                                                                                                         GCATGCCGGTGCCAGCCAGGTGCGGGTGCGCCTGCAGCGCAGTCCCAAGGGCTTGCGCCTGTTCATTCGCGACAATGGCTGCGGCGCCCACCAGCCCCAGCGCCCAGGGGTAGGCCTGCACTCGATGGCCGAGCGCGCCCGCAGCCTTGGGGGGGAGTTACGCATTTTCAGCCGCCCTGGAGGCGGCTGGGCGCTGGCCCTTAACATTCCCCAGGAGGTGTGATGAATATCGTGTTGGTCGATGACCACGCCGTGGTCCGCCAGGGCTACGCCA  >  NC_002947/3059774‑3060047

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.