| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3450359 = | 43 (0.830) | 3 (0.060) | 3/254 | NT | 7.1% | coding (228/366 nt) | PP_5558 | Xre family transcriptional regulator |
| ? | NC_002947 | 3450404 = | 38 (0.760) | coding (183/366 nt) | PP_5558 | Xre family transcriptional regulator | |||||
TTTCGCTGACCTCCCTTTAGGTTTCCGCTCAGAGCACTGCGAGCCTTCACGCCTAGCCCTTGAGTGGAGTGTAGAAGCACTCGCATTTCGTTCAGGCGTTTCCCCAGACGCGATCCGCACGATCGAACTTGGAAATGAGCTGCGGCGCGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3450509‑3450359‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgtcTGGGGAAACGCCTGAACGAAATGCGAGTGCTTCTACACTCCACTCAAGGGCTAGGCGTGAAGGCTCGCAGTGCTCTGAGCGGAAACCTAAAGGGAGGTCAGCGAAAAATTCTTCGATCTCTTTCGGGATGCCTTCTTCCATGGTC > NC_002947/3450404‑3450548 TTTCGCTGACCTCCCTTTAGGTTTCCGCTCAGAGCACTGCGAGCCTTCACGCCTAGCCCTTGAGTGGAGTGTAGAAGCACTCGCATTTCGTTCAGGCGTTTCCCCAGACGCGATCCGCACGATCGAACTTGGAAATGAGCTGCGGCGCG > 8:90223/1‑149TTTCGCTGACCTCCCTTTAGGTTTCCGCTCAGAGCACTGCGAGCCTTCACGCCTAGCCCTTGAGTGGAGTGTAGAAGCACTCGCATTTCGTTCAGGCGTTTCCCCAGACGCGATCCGCACGATCGAACTTGGAAATGAGCTGCGGCGC < 8:189740/148‑1 TTCGCTGACCTCCCTTTAGGTTTCCGCTCAGAGCACTGCGAGCCTTCACGCCTAGCCCTTGAGTGGAGTGTAGAAGCACTCGCATTTCGTTCAGGCGTTTCCCCAGACGCGATCCGCACGATCGAACTTGGAAATGAGCTGCGGCGCG < 7:137213/148‑1 CGCTGACCTCCCTTTAGGTTTCCGCTCAGAGCACTGCGAGCCTTCACGCCTAGCCCTTGAGTGGAGTGTAGAAGCACTCGCATTTCGTTCAGGCGTTTCCCCAGACGCGATCCGCACGATCGAACTTGGAAATGAGCTGCGGCGCGTC < 1:91481/148‑1 CGCTGACCTCCCTTTAGGTTTCCGCTCAGAGCACTGCGAGCCTTCACGCCTAGCCCTTGAGTGGAGTGTAGAAGCACTCGCATTTCGTTCAGGCGTTTCCCCAGACGCGATCCGCACGATCGAACTTGGAAATGAGCTGCGGCGCGTC < 7:6961/148‑1 CGCTGACCTCCCTTTAGGTGTCCGCTCAGAGCACTGCGAGCCTTCACGCCTAGCCCTTGAGTGGAGTGTAGAAGCACTCGCATTTCGTTCAGGCGTTTCCCCAGACGCGATCCGCACGATCGAACTTGGAAATGAGCTGCGGCGCGTC < 4:15397/148‑1 CCAGACGCGATCCGCACGATCGAACTTGGAAATGAGCTGCGGCGCGTCTGGGGAAACGCCTGAACGAAATGCGAGTGCTTCTACACTCCACTCAAGGGCTAGGCGTGAAGGCTCGCAGTGCTCTGAGCGGAAACCTAAAGGGAGGTCAG > 7:77574/1‑149 AGACGCGATCCGCACGATCGAACTTGGAAATGAGCTGCGGCGCGTCTGGGGAAACGCCTGAACGAAATGCGAGTGCTTCTACACTCCACTCAAGGGCTAGGCGTGAAGGCTCGCAGTGCTCTGAGCGGAAACCTAAAGGGAGGTCAGC > 3:139260/1‑148 CGATCCGCACGATCGAACTTGGAAATGAGCTGCGGCGCGTCTGGGGAAACGCCTGAACGAAATGCGAGTGCTTCTACACTCCACTCAAGGGCTAGGCGTGAAGGCTCGCAGTGCTCTGAGCGGAAACCTAAAGGGAGGTCAGCGAAAAA < 4:139260/149‑1 CGCGTCTGGGGAAACGCCTGAACGAAATGCGAGTGCTTCTACACTCCACTCAAGGGCTAGGCGTGAAGGCTCGCAGTGCTCTGAGCGGAAACCTAAAGGGAGGTCAGCGAAAAATTCTTCGATCTCTTTCGGGATGCCTTCTTCCATGG > 3:254703/1‑149 CGTCTGGGGAAACGCCTGAACGAAATGCGAGTGCTTCTACACTCCACTCAAGGGCTAGGCGTGAAGGCTCGCAGTGCTCTGAGCGGAAACCTAAAGGGAGGTCAGCGAAAAATTCTTCGATCTCTTTCGGGATGCCTTCTTCCATGGTC < 4:28558/149‑1 CGTCTGGGGAAACGCCTGAACGAAATGCGAGTGCTTCTACACTCCACTCAAGGGCTAGGCGTGAAGGCTCGCAGTGCTCTGAGCGGAAACCTAAAGGGAGGTCAGCGAAAAATTCTTCGATCTCTTTCGGGATGCCTTCTTCCATGGTC < 8:137042/149‑1 CGTCTGGGGAAACGCCTGAACGAAATGCGAGTGCTTCTACACTCCACTCAAGGGCTAGGCGTGAAGGCTCGCAGTGCTCTGAGCGGAAACCTAAAGGGAGGTCAGCGAAAAATTCTTCGATCTCTTTCGGGATGCCTTCTTCCATGGTC < 8:137213/149‑1 TTTCGCTGACCTCCCTTTAGGTTTCCGCTCAGAGCACTGCGAGCCTTCACGCCTAGCCCTTGAGTGGAGTGTAGAAGCACTCGCATTTCGTTCAGGCGTTTCCCCAGACGCGATCCGCACGATCGAACTTGGAAATGAGCTGCGGCGCGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3450509‑3450359‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgtcTGGGGAAACGCCTGAACGAAATGCGAGTGCTTCTACACTCCACTCAAGGGCTAGGCGTGAAGGCTCGCAGTGCTCTGAGCGGAAACCTAAAGGGAGGTCAGCGAAAAATTCTTCGATCTCTTTCGGGATGCCTTCTTCCATGGTC > NC_002947/3450404‑3450548 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |