New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3450359 =	43 (0.830)	3 (0.060)	3/254	NT	7.1%	coding (228/366 nt)	PP_5558	Xre family transcriptional regulator
	?	NC_002947	3450404 =	38 (0.760)					coding (183/366 nt)	PP_5558	Xre family transcriptional regulator

CGCCCTCTTATTCGATCAAGTGGTAGTCGCTTCTGGTTCGGGGATCAGCTGTAGCCCCTCGGCAGTCGTCAGAACGGAGGGGAGGGTGTCCAGGGAAGAAAATGAGCCCTTCTGCTTCAAGCGCAAACGCGAGCGCCTGCATTGTGACGCGCCGCAGCTCATTTCCAAGTTCGATCGTGCGGATCGCGTCTGGGGAAACGCCTGAACGAAATGCGAGTGCTTCTACACTCCACTCAAGGGCTAGGCGTGAAGGCTCGCAGTGCTCTGAGCGGAAACCTAAAGGGAGGTCAGCG  >  NC_002947/3450214‑3450506                                                                                                                                                  |                                                                                                                                                    gaccatggaagaaggcatcccgaaagagatcgaagaatttttcgctgacctccctttaggtttccgctcagagcactgcgagccttcacgcctagcccttgagtggagtgtagaagcactcgcatttcgttcaggcgtttccccaGAcg                                                                                                                                                  <  4:28558‑M1/4‑1 (MQ=255) gaccatggaagaaggcatcccgaaagagatcgaagaatttttcgctgacctccctttaggtttccgctcagagcactgcgagccttcacgcctagcccttgagtggagtgtagaagcactcgcatttcgttcaggcgtttccccaGAcg                                                                                                                                                  <  8:137042‑M1/4‑1 (MQ=255) gaccatggaagaaggcatcccgaaagagatcgaagaatttttcgctgacctccctttaggtttccgctcagagcactgcgagccttcacgcctagcccttgagtggagtgtagaagcactcgcatttcgttcaggcgtttccccaGAcg                                                                                                                                                  <  8:137213‑M1/4‑1 (MQ=255)   ccatggaagaaggcatcccgaaagagatcgaagaatttttcgctgacctccctttaggtttccgctcagagcactgcgagccttcacgcctagcccttgagtggagtgtagaagcactcgcatttcgttcaggcgtttccccaGAcgcg                                                                                                                                                >  3:254703‑M1/144‑149 (MQ=255)    ccTCTTATTCGATCAAGTGGTAGTCGCTTCTGGTTCGGGGATCAGCTGTAGCCCCTCGGCAGTCGTCAGAACGGAGGGGAGGGTGTCCAGGGAAGAAAATGAGCCCTTCTGCTTCAAGCGCAAACGCGAGCGCCTGCATTGTGACgcgc                                                                                                                                               >  8:147894/1‑149 (MQ=255)    ccTCTTATTCGATCAAGTGGTAGTCGCTTCTGGTTCGGGGATCAGCTGTAGCCCCTCGGCAGTCGTCAGAACGGAGGGGAGGGTGTCCAGGGAAGAAAATGAGCCCATCTCCTTCAAGCGCAAACGCGAGAGCCTGCATTGTGACgcgc                                                                                                                                               >  2:104186/1‑149 (MQ=255)      tctTATTCGATCAAGTGGTAGTCGCTTCTGGTTCGGGGATCAGCTGTAGCCCCTCGGCAGTCGTCAGAACGGAGGGGAGGGTGTCCAGGGAAGAAAATGAGCCCTTCTGCTTCAAGCGCAAACGCGAGCGCCTGCATTGTGACGcgccg                                                                                                                                             >  7:40395/1‑149 (MQ=255)              gATCAAGTGGTAGTCGCTTCTGGTTCGGGGATCAGCTGTAGCCCCTCGGCAGTCGTCAGAACGGAGGGGAGGGTGTCCAGGGAAGAAAATGAGCCCTTCTGCTTCAAGCGCAAACGCGAGCGCCTGCATTGTGACGCGCCGCAGCTCAt                                                                                                                                     >  1:191153/1‑149 (MQ=255)                  aaGTGGTAGTCGCTTCTGGTTCGGGGATCAGCTGTAGCCCCTCGGCAGTCGTCAGAACGGAGGGGAGGGTGTCCAGGGAAGAAAATGAGCCCTTCTGCTTCAAGCGCAAACGCGAGCGCCTGCATTGTGACGCGCCGCAGCTCATTTcc                                                                                                                                 <  8:287326/149‑1 (MQ=255)                                 cTGGTTCGGGGATCAGCTGTAGCCCCTCTGCAGTCGTCAGAACGGAGGGGTGGGTGTCCAGGGAAGAAAATGAGCCCTTCTGCTTCAAGAGCAAACGCGAGCGCCTGCATTGTGACGCTCCGCAGCTCATTTCCAAGTTCGATCGTGc                                                                                                                   <  5:134107/148‑1 (MQ=255)                                 cTGGTTCGGGGATCAGCTGTAGCCCCTCGTCAGTCGTCAGAACGGAGGGGAGGGTGTCCAGGGAAGAAAATGAGCCCTTCTGCTTCAAGCGCAAACGCGAGCGCCTGCATTGTGACGCGCCGCAGCTCATTTCCAAGTTCGATCGTGc                                                                                                                   <  3:80326/148‑1 (MQ=255)                                    gTTCGGGGATCAGCTGTAACCCCTCGGCAGTCGTCAGAACGGAGGGGAGGGTGTCCAGGGAAGAAAATGAGCCCTTCTGCTTCAAGCGCAAACGCGAGCGCCTGCATTGTGACGCGCCGCAGCTCATTTCCAAGTTCGATccgcac                                                                                                                  <  1:324154/146‑6 (MQ=255)                                     ttCGGGGATCAGCTGTAGCCCCTCGGCAGTGGTCAGAACGGAGGGGAGGGTGTCCAGGGAAGAAAATGAGCCCTTCTGCTTCAAGCGCAAACGCGAGCGCCTGCATTGTGACGCGCCGCAGCTCATTTCCAAGTTCGATCGTGCGGATc                                                                                                              <  8:142513/149‑1 (MQ=255)                                      tttttcgctgacctccctttaggtttccgctcagagcactgcgagccttcacgcctagcccttgagtggagtgtagaagcactcgcatttcgttcaggcgtttccccaGACGCGCCGCAGCTCATTTCCAAGTTCGATCGTGCGGATcg                                                                                                             <  4:139260‑M1/41‑1 (MQ=255)                                           gATCAGCTGTAGCCCCTCGGCAGTCGTCAGAACGGAGGGGAGGGTGTCCAGGGAAGAAAATGAGCCCTTCTGCTTCAAGCGCAAACGCGAGCGCCTGCATTGTGACGCGCCGCAGCTCATTTCCAAGTTCGATCGTGCGGATCGCGTCt                                                                                                        <  3:230682/149‑1 (MQ=255)                                            gctgacctccctttaggtttccgctcagagcactgcgagccttcacgcctagcccttgagtggagtgtagaagcactcgcatttcgttcaggcgtttccccaGACGCGCCGCAGCTCATTTCCAAGTTCGATCGTGCGGATCGCGTCt                                                                                                        >  3:139260‑M1/103‑148 (MQ=255)                                             ctgacctccctttaggtttccgctcagagcactgcgagccttcacgcctagcccttgagtggagtgtagaagcactcgcatttcgttcaggcgtttccccaGACGCGCCGCAGCTCATTTCCAAGTTCGATCGTGCGGATCGCGTCTgg                                                                                                      >  7:77574‑M1/102‑149 (MQ=255)                                              cAGGTGTTGGCCCTGGGCAGTCGTCAGAACGGAGGGGAGGGTGTGCAGGGATGAAAATGAGGCATTCTGCTTGAAGCGCAAACGCGAGCGCCTGCATTGTGACGCGCCGCAGCTCATTTCCAAGTTCGATCGTGCGGATCGCGTCTgg                                                                                                      <  5:8964/148‑1 (MQ=255)                                               aGCTGTAGCCCCTCGGCAGTCGTCAGAACGGAGGGGAGGGTGTCCAGGGAAGAAAATGAGCCCTTCTGCTTCAAGCGCAAACGCGAGCGCCTGCATTGTGACGCGCCGCAGCTCATTTCCAAGTTCGATCGTGCGGATCGCGTCTggg                                                                                                     >  3:107384/1‑148 (MQ=255)                                               aGCTGTAGCCCCTCGGCAGTCGTCAGAACGGAGGGGAGGGTGTCCAGGGAAGAAAATGAGCCCTTCTGCTTCAAGCGCAAACGCGAGCGCCTGCATTGTGACGCGCCGCAGCTCATTTCCAAGTTCGATCGTGCGGATCGCGTCTggg                                                                                                     >  4:187912/1‑148 (MQ=255)                                                    tAGCCCCTCGGCAGTCGTCAGAACGGAGGGGAGGGTGTCCAGGGAAGAAAATGAGCCCTTCTGCTTCAAGCGCAAACGCGAGCGCCTGCATTGTGACGCGCCGCAGCTCATTTCCAAGTTCGATCGTGCGGATCGCGTCTGGGGAAACg                                                                                               >  7:301081/1‑149 (MQ=255)                                                      gCCCCTCGGCAGTCGTCAGAACGGAGGGGAGGGTGTCCAGGGAAGAAAATGAGCCCTTCTGCTTCAAGCGCAAAGGCGAGCGCCTGCATTGTGACGCGCCGCAGCTCATTTCCAAGTTCGATCGTGCGGATCGCGTCTGGGGAAACGcc                                                                                             >  7:90223/1‑149 (MQ=255)                                                          cTCGGCAGTCGTCAGAACGGAGGGGAGGGTGTCCAGGGAAGAAAATGAGCCCTTCTGCTTCAAGCGCAAACGCGAGCGCCTGCATTGTGACGCGCCGCAGCTCATTTCCAAGTTCGATCGTGCGGATCGCGTCTGGGGAAACGCCTGaa                                                                                         <  3:187912/149‑1 (MQ=255)                                                               cAGTCGTCAGAACGGAGGGGAGGGTGTCCAGGGAAGAAAATGAGCCCTTCTGCTTCAAGCGCAAACGCGAGCGCCTGCATTGTGACGCGCCGCAGCTCATTTCCAAGTTCGATCGTGCGGATCGCGTCTGGGGAAACGCCTGAACGaaa                                                                                    <  4:107384/149‑1 (MQ=255)                                                               cAGTCGTCAGAACGGAGGGGAGGGTGTCCAGGGAAGAAAATGAGCCCTTCTGCTTCAAGCGCAAACGCGAGCGCCTGCATTGTGACGCGCCGCAGCTCATTTCCAAGTTCGATCGTGCGGATCGCGTCTGGGGAAACGCCTGAACGaaa                                                                                    <  8:301081/149‑1 (MQ=255)                                                                  tcgtcAGAACGGAGGGGAGGGTGTCCAGGGAAGAAAATGAGCCCTTCTGCTTCAAGCGCAAACGCGAGCGCCTGCATTGTGACGCGCCGCAGCTCATTTCCAAGTTCGATCGTGCGGATCGCGTCTGGGGAAACGCCTGAACGAAATGc                                                                                 <  2:175252/149‑1 (MQ=255)                                                                    gtcAGAACGGAGGGGAGGGTGTCCAGGGAAGAAAATGAGCCCTTCTGCTTCAAGCGCAAACGCGAGCGCCTGCATTGTGACGCGCCGCAGCTCATTTCCAAGTTCGATCGTGCGGATCGCGTCTGGGGAAACGCCTGAACGAAATGCGa                                                                               <  7:22422/149‑1 (MQ=255)                                                                     tcAGAACGGAGGGGAGGGTGTCCAGGGAAGAAAATGAGCCCTTCTGCTTCAAGCGCAAACGCGAGCGCCTGCATTGTGACGCGCCGCAGCTCATTTCCAAGTTCGATCGTGCGGATCGCGTCTGGGGAAACGCGTGACCGAAATgagcg                                                                              >  8:302216/1‑145 (MQ=255)                                                                     tcAGAACGGAGGGGAGGGTGTCCAGGGAAGAAAATGAGCCCTTCTGCTTCAAGCGCAAACGCGAGCGCCTGCATTGTGACGCGCCGCAGCTCATTTCCAAGTTCGATCGTGCGGATCGCGTCTGGGGAAACGCCTGAACGAAATGc                                                                                 <  4:221655/146‑1 (MQ=255)                                                                     tcAGAACGGAGGGGAGGGTGTCCAGGGAAGAAAATGAGCCCTTCTGCTTCAAGCGCAAACGCGAGCGCCTGCATTGTGACGCGCCGCAGCTCATTTCCAAGTTCGATCGTGCGGATCGCGTCTGGGGAAACGCCTGAACGAAATGc                                                                                 >  3:221655/1‑146 (MQ=255)                                                                        gAACGGAGGGGAGGGTGTCCAGGGAAGAAAATGAGCCCTTCTGCTTCAAGCGCAAACGCGAGCGCCTGCATTGTGACGCGCCGCAGCTCATTTCCAAGTTCGATCGTGCGGATCGCGTCTGGGGAAACGc                                                                                              >  5:158962/1‑130 (MQ=255)                                                                        gAACGGAGGGGAGGGTGTCCAGGGAAGAAAATGAGCCCTTCTGCTTCAAGCGCAAACGCGAGCGCCTGCATTGTGACGCGCCGCAGCTCATTTCCAAGTTCGATCGTGCGGATCGCGTCTGGGGAAACGc                                                                                              <  6:158962/130‑1 (MQ=255)                                                                           cGGAGGGGAGGGTGTCCAGGGAAGAAAATGAGCCCTTCTGCTTCAAGCGCAAACGCGAGAGCCTGCATTGTCACGCGCCGCAGCTCATTTCCAAGTTCGATCGTGCGGATCGCGTCTGGGGAAACGCCTGAACGAAATGCGAGTGCTTc                                                                        <  1:104186/149‑1 (MQ=255)                                                                                    gggTGTCCAGGGAAGAAAATGAGCCCTTCTGCTTCAAGCGCAAACGCGAGCGCCTGCATTGTGACGCGCCGCAGCTCATTTCCAAGTTCGATCGTGCGGATCGCGTCTGGGGAAACGCCTGAACGAAATGCGa                                                                               >  8:47839/1‑133 (MQ=255)                                                                                    gggTGTCCAGGGAAGAAAATGAGCCCTTCTGCTTCAAGCGCAAACGCGAGCGCCTGCATTGTGACGCGCCGCAGCTCATTTCCAAGTTCGATCGTGCGGATCGCGTCTGGGGAAACGCCTGAACGAAATGCGa                                                                               <  7:47839/133‑1 (MQ=255)                                                                                    gggTGTCCAGGGAAGAAAATGAGCCCTTCTGCTTCAAGCGCAAACGCGAGCGCCTGCATTGTGACGCGCCGCAGCTCATTTCCAAGTTCGATCGTGCGGATCGCGTCTGGGGAAACGCCTGAACGAAATGCGAGTGCTTCTAcactcca                                                               >  3:28558/1‑149 (MQ=255)                                                                                    gggTGTCCAGGGAAGAAAATGAGCCCTTCTGCTTCAAGCGCAAACGCGAGCGCCTGCATTGTGACGCGCCGCAGCTCATTTCCAAGTTCGATCGTGCGGATCGCGTCTGGGGAAACGCCTGAACGAAATGCGAGTGCTTCTAcactcca                                                               <  8:40395/149‑1 (MQ=255)                                                                                        gtCCAGGGAAGAAAATGAGCCCTTCTGCTTCAAGCGCAAACGCGAGCGCCTGCATTGTGACGCGCCGCAGCTCATTTCCAAGTTCGATCGTGCGGATCGCGTCTGGGGAAACGCCTGAACGAAATGCGAGTGCTTCTAcactccactc                                                            >  3:112798/1‑148 (MQ=255)                                                                                         tCCAGGGAAGAAAATGAGCCCTTCTGCTTCAAGCGCAAACGCGAGCGCCTGCATTGTGACGCGCCGCAGCTCATTTCCAAGTTCGATCGTGCGGATCGCGTCTGGGGAAACGCCTGAACGAAATGCGAGTGCTTCTACACTCCACTCa                                                           <  7:302216/148‑1 (MQ=255)                                                                                            aGGGAAGAAAATGAGCCCTTCTGCTTCAAGCGCAAACGCGAGCGCCTGCATTGTGACGCGCCGCAGCTCATTTCCAAGTTCGATCGTGCGGATCGCGTCTGGGGAAACGCCTGAACGAAATGc                                                                                 >  4:132687/1‑123 (MQ=255)                                                                                            aGGGAAGAAAATGAGCCCTTCTGCTTCAAGCGCAAACGCGAGCGCCTGCATTGTGACGCGCCGCAGCTCATTTCCAAGTTCGATCGTGCGGATCGCGTCTGGGGAAACGCCTGAACGAAATGc                                                                                 <  3:132687/123‑1 (MQ=255)                                                                                                aagaaAATGAGCCCTTCTGCTTCAAGCGCAAACGCGAGCGCCTGCATTGTGACGCGCCGCAGCTCATTTCCAAGTTCGATCGTGCGGATCGCGTCTGGGGAAACGCCTGAACGAAATGCGAGTGCTTCTACACTCCACTCAAGGGCTAg                                                   <  7:147894/149‑1 (MQ=255)                                                                                                aagaaAATGAGCCCTTCTGCTTCAAGCGCAAACGCGAGCGCCTGCATTGTGACGCGCCGCAGCTCATTTCCAAGATCGATCGTGCGGATCGCGACTGGGGAAACGCCTGAACGAAATGCGAGTGCTTCTACACTCCACTCAAGTGCTAg                                                   >  7:85697/1‑149 (MQ=255)                                                                                                            ccTTCTGCTTCAAGCGCAAACGCGAGCGCCTGCATTGTGACGCGCCGCAGCTCATTTCCAAGTTCGATCGTGCGGATCGCGTCTGGGGAAACGCCTGAACGAAATGCGAGTGCTTCTACACTCCACTCAAGGGCTAGGCGTGAAGGCTc                                       >  3:127285/1‑149 (MQ=255)                                                                                                            ccTTCTGCTTCAAGCGCAAACGCGAGCGCCTGCATTGTGACGCGCCGCAGCTCATTTCCAAGTTCGATCGTGCGGATCGCGTCTGGGGAAACGCCTGAACGAAATGCGAGTGCTTCTACACTCCACTCAAGGGCTAGGCGTGAAGGCTc                                       >  3:127275/1‑149 (MQ=255)                                                                                                                      cAAGCGCAAACGCGAGCGCCTGCATTGTGACGCGCCGCAGCTCATTTCCAAGTTCGATCGTGCGGATCGCGTCTGGGGAAACGCCTGAACGAAATGCGAGTGCTTCTACACTCCACTCAAGGGCTAGGCGTGAAGGCTCGCAGTGct                               <  7:39582/147‑1 (MQ=255)                                                                                                                       aaGCGCAAACGCGAGCGCCTGCATTGTGACGCGCCGCAGCTCATTTCCAAGTACGATCGTGCGGATCGCGTCTGGGGAAACGCCTGAACGAAATGCGAGTGCTTCTACACTCCACTCAAGGGCTAGGCGTGAAGGCTCGCAGTGctct                             >  1:85841/1‑148 (MQ=255)                                                                                                                        aGCGCAAACGCGAGCGCCTGCATTGTGACGCACCGCAGCTCATTTCCAAGTTCGATCGTGCGGATCGCGTCTGGGGAAACGCCTGAACGAAATGCGAGTGCTTCTACACTCCACTCAAGGGCTAGGCGTGAAGGCTCGCAGTGctct                             >  1:33487/1‑147 (MQ=255)                                                                                                                           gcAAACGCGAGCGCCTGCATTGTGACGCGCCGCAGCTCATTTCCAAGTTCGATCGTGCGGATCGCGTCTGGGGAAACGCCTGAACGAAATGCGAGTGCTTCTACACTCCACTCAAGGGCTAGGCGTGAAGGCTCGCAGTGCTCTGAGCg                        <  4:127285/149‑1 (MQ=255)                                                                                                                                            cATTGTGACGCGCCGGAGCTCATTTCCAAGTTCGATCGTGCGGATCGCGTCTGGGGAAACGCCTGAACGAAATGCGAGTGCTTCTACACTCCACTCAAGGGCTAGGCGTGAAGGCTCGCAGTGCTCTGAGCGGAAACCTAAAGGGAg         <  2:191153/147‑1 (MQ=255)                                                                                                                                                gtgACGCGCCGCAGCTCATTTCCAAGTTCGATCGTGCGGATCGCGTCTGGGGAAACGCCTGAACGAAATGCGAGTGCTTCTACACTCCACTCAAGGGCTAGGCGTGAAGGCTCGCAGTGCTCTGAGCGGAAACCTAAAGGGAGGTCAGc   >  7:155542/1‑149 (MQ=255)                                                                                                                                                 tgACGCGCCGCAGCTCATTTCCAAGTTCGATCGTGCGGATCGCGTCTGGGGAAACGCCTGAACGAAATGCGAGTGCTTCTACACTCCACTCAAGGGCTAGGCGTGAAGGCTCGCAGTGCTCTGAGCGGAAACCTAAAGGGAGGTCAGc   >  7:67545/1‑148 (MQ=255)                                                                                                                                                  GACGCGCCGCAGCTCATTTCCAAGTTCGATCGTGCGGATCGCGTCTGGGGAAACGCCTGAACGAAATGCGAGTGCTTCTACACTCCACTCAAGGGCTAGGCGTGAAGGCTCGCAGTGCTCTGAGCGGACACCTAAAGGGAGGTCAGCg  <  4:15397‑M1/148‑1 (MQ=255)                                                                                                                                                  GACGCGCCGCAGCTCATTTCCAAGTTCGATCGTGCGGATCGCGTCTGGGGAAACGCCTGAACGAAATGCGAGTGCTTCTACACTCCACTCAAGGGCTAGGCGTGAAGGCTCGCAGTGCTCTGAGCGGAAACCTAAAGGGAGGTCAGCg  <  1:91481‑M1/148‑1 (MQ=255)                                                                                                                                                  GACGCGCCGCAGCTCATTTCCAAGTTCGATCGTGCGGATCGCGTCTGGGGAAACGCCTGAACGAAATGCGAGTGCTTCTACACTCCACTCAAGGGCTAGGCGTGAAGGCTCGCAGTGCTCTGAGCGGAAACCTAAAGGGAGGTCAGCg  <  7:6961‑M1/148‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                    CGCCCTCTTATTCGATCAAGTGGTAGTCGCTTCTGGTTCGGGGATCAGCTGTAGCCCCTCGGCAGTCGTCAGAACGGAGGGGAGGGTGTCCAGGGAAGAAAATGAGCCCTTCTGCTTCAAGCGCAAACGCGAGCGCCTGCATTGTGACGCGCCGCAGCTCATTTCCAAGTTCGATCGTGCGGATCGCGTCTGGGGAAACGCCTGAACGAAATGCGAGTGCTTCTACACTCCACTCAAGGGCTAGGCGTGAAGGCTCGCAGTGCTCTGAGCGGAAACCTAAAGGGAGGTCAGCG  >  NC_002947/3450214‑3450506

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.