New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3685928	43 (0.830)	3 (0.060)	3/258	NT	6.3%	coding (336/1332 nt)	PP_3251	hypothetical protein
	?	NC_002947	= 3685965	48 (0.950)					coding (373/1332 nt)	PP_3251	hypothetical protein

CACCGTTTACCGGGCACAACGCCGTCAAGGTATGCCCCGGCGTTACTTTTCCAACCGCGCCCACGCATTGTGGTTCCTGCAACAGGTTGCGCCTACCAAGGCCGTGGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3685820‑3685928 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggatCGCGCCAGTGATGCAGGGTGCCCTGTAGCCAGGCGCCATCCAC  <  NC_002947/3685965‑3685923                                                                                                                                                          CACCGTTTACCGGGCACAACGCCGTCAAGGTATGCGCCGGCGTTACTTTTCCAACCGCGCCCACGCATTGTGGTTCCTGCAACAGGTTGCGCCTACCAAGGCCGTGGATCGCGCCAGTGATGCAGGGTGCCCTGTAGCCAGGCGCCATC     <  7:284234/149‑1             GGCACAACGCCGTCAAGGTATGCCCCGGCGTTACTTTTCCAACCGCGCCCACGCATTGTGGTTCCTGCAACAGGTTGCGCCTACCAAGGCCGTGGATCGCGCCAGTGATGCAGGGTGCCCTGTAGCCAGGCGCCATCCAC  >  7:289239/1‑140             GGCACAACGCCGTCAAGGTATGCCCCGGCGTTACTTTTCCAACCGCGCCCACGCATTGTGGTTCCTGCAACAGGTTGCGCCTACCAAGGCCGTGGATCGCGCCAGTGATGCAGGGTGCCCTGTAGCCAGGCGCCATCCAC  <  8:289239/140‑1                                                                                                                                                          CACCGTTTACCGGGCACAACGCCGTCAAGGTATGCCCCGGCGTTACTTTTCCAACCGCGCCCACGCATTGTGGTTCCTGCAACAGGTTGCGCCTACCAAGGCCGTGGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3685820‑3685928 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggatCGCGCCAGTGATGCAGGGTGCCCTGTAGCCAGGCGCCATCCAC  <  NC_002947/3685965‑3685923

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.