New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3685928	43 (0.830)	3 (0.060)	3/258	NT	6.3%	coding (336/1332 nt)	PP_3251	hypothetical protein
	?	NC_002947	= 3685965	48 (0.950)					coding (373/1332 nt)	PP_3251	hypothetical protein

CAAGAAGCATACCGCCGAGGTCGCCAAGGCCTACACCGTTTACCGGGCACAACGCCGTCAAGGTATGCCCCGGCGTTACTTTTCCAACCGCGCCCACGCATTGTGGTTCCTGCAACAGGTTGCGCCTACCAAGGCCGTGGATGGCGCCTGGCTACAGGGCACCCTGCATCACTGGCGCGATCCGCGTTACCACGGGCTGATTCGCACCTATCTGGAAGAGCTCGGCAACGGTGATCCACGCTGCAACCATGTGCTGATCTATCAGCGCCTGCTTGCTCGCCTGGGTTG  >  NC_002947/3685787‑3686074                                                                                                                                              |                                                                                                                                                   cAAGAAGCATACCGCCGAGGTCGCCAAGGCCTACACCGTTTACCGGGCACAACGCCGTCAAGGTATGCCCCGGCGTTACTTTTCCAACCGCGCCCACGCATTGTGGTTCCTGCAACAGGTTGCGCCTACCAAGGCCGTGGATGGCGCCt                                                                                                                                             >  6:53521/1‑149 (MQ=255)    gaagCATACCGCCGAGGTCGCCAAGGCCTACACCGTTTACCGGGCACAACGCCGTCAAGGTATGCCCCGGCGTTACTTTTCCAACCGCGCCCACGCATTGTGGTTCCTGCAACAGGTTGCGCCTACCAAGGCCGTGGATGGCGCCTGGc                                                                                                                                          >  6:55719/1‑149 (MQ=255)         aTACCGCCGAGGTCGCCAAGGCCTACACCGTTTACCGGGCACAACGCCGTCAAGGTATGCCCCGGCGTTACTTTTCCAACCGCGCCCACGCATTGTGGTTCCTGCAACAGGTTGCGACTACCAAGGCCGTGGATGGCGCCTGGCTACAg                                                                                                                                     <  1:203339/149‑1 (MQ=255)          tACCGCCGAGGTCGCCAAGGCCTACACCGTTTACCGGGCACAACGCCGTCAAGGTATGCCCCGGCGTTACTTTTCCAACCGCGCCCACGCATTGTGGTTCCTGCAACAGGTTGCGCCTACCAAGGCCGTGGATGGCGCCTGGCTACAgg                                                                                                                                    <  8:56556/149‑1 (MQ=255)               ccgAGGTCGCCAAGGCCTACACCGTTTACCGGGCACAACGCCGTCAAGGTATGCCCCGGCGTTACTTTTCCAACCGCGCCCACGCATTGTGGTTCCTGCAACAGGTTGCGCCTACCAAGGCCGTGGATGGCGCCTGGCTACAGGGCAcc                                                                                                                               >  1:140870/1‑149 (MQ=255)                  aGGTCGCCAAGGCCTACACCGTTTACCGGGCACAACGCCGTCAAGGTATGCCCCGGCGTTACTTTTCCAACCGCGCCCACGCATTGTGGTTCCTGCAACAGGTTGCGCCTACCAAGGCCGTGGATGGCGCCTGGCTACAGGGCACCCTg                                                                                                                            >  5:284960/1‑149 (MQ=255)                       gCCAAGGCCTACACCGTTTACCGGGCACAACGCCGTCAAGGTATGCCCCGGCGTTACTTTTCCAACCGCGCCCACGCATTGTGGTTCCTGCAACAGGTTGCGCCTACCAAGGCCGTGGATGGCGCCTGGCTACAGGGCACCCTGCATCa                                                                                                                       <  7:61074/149‑1 (MQ=255)                                  cacCGTTTACCGGGCACAACGCCGTCAAGGTATGCGCCGGCGTTACTTTTCCAACCGCGCCCACGCATTGTGGTTCCTGCAACAGGTTGCGCCTACCAAGGCCGTGGATcgcgccagtgatgcagggtgccctgtagccaggcgccatc                                                                                                            <  7:284234‑M1/149‑41 (MQ=255)                                     cGTTTACCGGGCACAACGCCGTCAAGGTATGCCCCGGCGTTACTTTTCCAACCGCGCCCACGCATTGTGGTTCCTGCAACAGGTTGCGCCTACCAAGGCCGTGGATGGCGCCTGGCTACAGGGCACCCTGCATCACTGGCGCGATCcgc                                                                                                         <  8:141995/149‑1 (MQ=255)                                      gTTTACCGGGCACAACGCCGTCAAGGTATGCCCCGGCGTTACTTTTCCAACCGCGCCCACGCATTGTGGTTCCTGCAACAGGTTGCGCCTACCAAGGCCGTGGATGGCGCCTGGCTACAGGGCACCCTGCATCACTGgc                                                                                                                  <  5:216081/139‑1 (MQ=255)                                      gTTTACCGGGCACAACGCCGTCAAGGTATGCCCCGGCGTTACTTTTCCAACCGCGCCCACGCATTGTGGTTCCTGCAACAGGTTGCGCCTACCAAGGCCGTGGATGGCGCCTGGCTACAGGGAACCCTGCATCACTGgc                                                                                                                  >  6:216081/1‑139 (MQ=255)                                          tcggggCTCAAGGCCGTCAAGGTATGCCCCGGCGTTACTTTTTCAACCGCGCCCAGGCATTGTGGTTCCTGGAACAGGTTGCGCCTACGAAGGCCGTGGATGGCGCGTGGCTa                                                                                                                                        <  8:50903/110‑1 (MQ=255)                                          aCCGGGCACAACGCCGTCAAGGTATGCCCCGGCGTTACTTTTCCAACCGCGCCCACGCATTGTGGTTCCTGCAACAGGTTGCGCCTACCAAGGCCGTGGATGGCGCCTGGCTACAGGGCACCCTGCATCACTGGCGCGATCCGCGTTAc                                                                                                    >  3:66952/1‑149 (MQ=255)                                          aCCGGGCACAACGCCGTCAAGGTATGCCCCGGCGTTACTTTTCCAACCGCGCCCACGCATTGTGGTTCCTGCAACAGGTTGCGCCTACCAAGGCCGTGGATGGCGCCTGGCTACAGGGCACCCTGCATCACTGGCGCGATCCGCGTTAc                                                                                                    >  8:138523/1‑149 (MQ=255)                                          aCCGGGCACAACGCCGTCAAGGTATGCCCCGGCGTTACTTTATCAACCGCGCCCACGCATAGTGGTTCCTGCAACAGGTTGCGCCTACCAAGGCCGTGGATGGCGCCTGGCTa                                                                                                                                        >  7:50903/1‑113 (MQ=255)                                              ggCACAACGCCGTCAAGGTATGCCCCGGCGTTACTTTTCCAACCGCGCCCACGCATTGTGGTTCCTGCAACAGGTTGCGCCTACCAAGGCCGTGGATcgcgccagtgatgcagggtgccctgtagccaggcgccatccac                                                                                                         >  7:289239‑M1/1‑97 (MQ=255)                                              ggCACAACGCCGTCAAGGTATGCCCCGGCGTTACTTTTCCAACCGCGCCCACGCATTGTGGTTCCTGCAACAGGTTGCGCCTACCAAGGCCGTGGATcgcgccagtgatgcagggtgccctgtagccaggcgccatccac                                                                                                         <  8:289239‑M1/140‑44 (MQ=255)                                              ggCACAACGCCGTCAAGGTATGCCCCGGCGTTACTTTTCCAACCGCGCCCACGCATTGTGGTTCCTGCAACAGGTTGCGCCTACCAAGGCCGTGGATGGCGCCTGGCTACAGGGCACCCTGCATCACTGGCGCGATCCGCGTTACCACg                                                                                                <  7:297418/149‑1 (MQ=255)                                                 acaACGCCGTCAAGGTATGCCCCGGCGTTACTTTTCCAACCGCGCCCACGCATTGTGGTTCCTGCAACAGGTTGCGCCTACCAAGGCCGTGGATGGCGCCTGGCTACAGGGCACCCTGCATCACTGGCGCGATCCGCGTTACCACGGGc                                                                                             >  5:231737/1‑149 (MQ=255)                                                   aaCGCCGTCAAGGTATGCCCCGGCGTTACTTTTCCAACCGCGCCCACGCATTGTGGTTCCTGCAACAGGTTGCGCCTACCAAGGCCGTGGATGGCGCCTGGCTACAGGGCACCCTGCATCACTGGCGCGATCCGCGTTACCACGGGCt                                                                                            >  3:120478/1‑148 (MQ=255)                                                   aaCGCCGTCAAGGTATGCCCCGGCGTTACTTTTCCAACCGCGCCCACGCATTGTGGTTCCTGCAACAGGTTGCGCCTACCAAGGCCGTGGATGGCGCCTGGCTACAGGGCACCCTGCATCACTGGCGCGATCCGCGTTACCACGGGCt                                                                                            >  6:143989/1‑148 (MQ=255)                                                          tCAAGGTATGCCCCGGCGTTACTTTTCCAACCGCGCCCACACATTGTGGTTCCTGCAACAGGTTGCGCCTACCAAGGCCGTGGATGGCGCCTGGCTACAGGGCACCCTGCATCACTGGCGCGATCCGCGTTACCACGGGCTGATTCGCa                                                                                    <  8:40816/149‑1 (MQ=255)                                                            aaGGTATGCCCCGGCGTTACTTTTCCAACCGCGCCCACGCATTGTGGTTCCTGCAACAGGTTGCGCCTACCAAGGCCGTGGATGGCGCCTGGCTACAGGGCACCCTGCATCACTGGCGCGATCCGCGTTACCACGGGCTGATTCGCAc                                                                                   <  2:140870/148‑1 (MQ=255)                                                                    ccccGGCGTTACTTTTCCAACCGCGCCCACGCATTGTGGTTCCTGCAACAGGTTGCGCCTACCAAGGCCGTGGATGGCGCCTGGCTACAGGGCACCCTGCATCACTGGCGCGATCCGCGTTACCACGGGCTGATTCGCACCTATCTgg                                                                           <  3:10913/148‑1 (MQ=255)                                                                     cccGGCGTTACTTTTCCAACCGCGCCCACGCATTGTGGTTCCTGCAACAGGTTGCGCCTACCAAGGCCGTGGATGGCGCCTGGCTACAGGGCACCCTGCATCACTGGCGCGATCCGCGTTACCACGGGCTGATTCGCACCTATCTGGaa                                                                         <  1:211458/149‑1 (MQ=255)                                                                     cccGGCGTTACTTTTCCAACCGCGCCCACGCATTGTGGTTCCTGCAACAGGTTGCGCCTACCAAGGCCGTGGATGGCGCCTGGCTACAGGGCACCCTGCATCACTGGCGCGATCCGCGTTACCACGGGCTGATTCGCACCTATCTGGaa                                                                         <  5:143989/149‑1 (MQ=255)                                                                     cccGGCGTTACTTTTCCAACCGCGCCCACGCATTGTGGTTCCTGCAACAGGTTGCGCCTACCAAGGCCGTGGATGGCGCCTGGCTACAGGGCACCCTGCATCACTGGCGCGATCCGCGTTACCACGGGCTGATTCGCACCTATCTGGaa                                                                         <  5:53521/149‑1 (MQ=255)                                                                      ccGGCGTTACTTTTCCAACCGCGCCCACGCATTGTGGTTCCTGCAACAGGTTGCGCCTACCAAGGCCGTGGATGGCGCCTGGCTACAGGGCACCCTGCATCACTGGCGCGATCCGCGTTACCACGGGCTGATTCGCACCTATCTgg                                                                           >  2:124488/1‑146 (MQ=255)                                                                      ccGGCGTTACTTTTCCAACCGCGCCCACGCATTGTGGTTCCTGCAACAGGTTGCGCCTACCAAGGCCGTGGATGGCGCCTGGCTACAGGGCACCCTGCATCACTGGCGCGATCCGCGTTACCACGGGCTGATTCGCACCTATCTgg                                                                           >  5:303093/1‑146 (MQ=255)                                                                           gTTACTTTTCCAACCGCGCCCACGCATTGTGGTTCCTGCAACAGGTTGCGCCTACCAAGGCCGTGGATGGCGCCTGGCTACAGGGCACCCTGCATCACTGGCGCGATCCGCGTTACCACGGGCTGATTCGCACCTATCTGGAAGAGCTc                                                                   <  6:231737/149‑1 (MQ=255)                                                                                ttttCCAACCGCGCCCACGCATTGTGGTTCCTGCAACAGGTTGCGCCTACCAAGGCCGTGGATGGCGCCTGGCTACAGGGCACCCTGCATCACTGGCGCGATCCGCGTTACCACGGGCTGATTCGCACCTATCTGGAAGAGCTCGGCaa                                                              >  7:178962/1‑149 (MQ=255)                                                                                  ttCCAACCGCGCCCACGCATTGTGGTTCCTGCAACAGGTTGCGCCTACCAAGGCCGTGGATGGCGCCTGGCTACAGGGCACCCTGCATCACTGGCGCGATCCGCGTTACCACGGGCTGATTCGCACCTATCTGGAAGAGCTCGGCAACg                                                            >  6:87257/1‑149 (MQ=255)                                                                                            gcCCACGCATTGTGGTTCCTGCAACAGGTTGCGCCTACCAAGGCCGTGGATGGCGCCTGGCTACAGGGCACCCTGCATCACTGGCGCGATCCGCGTTACCACGGGCTGATTCGCACCTATCTGGAAGAGCTCGGCAACGGTGATCCACg                                                  <  7:138523/149‑1 (MQ=255)                                                                                              ccACGCATTGTGGTTCCTGCAACAGGTTGCGCCTACCAAGGCCGTGGATGGCGCCTGGCTACAGGGCACCCTGCATCACTGGCGCGATCCGCGTTACCACGGGGGGATTCGCACCTATCTGGAAGAGCGCGGCATCGGTGATCCACGCt                                                >  8:222666/1‑149 (MQ=255)                                                                                                  gCATTGTGGTTCCTGCAACAGGTTGCGCCTACCAAGGCCGTGGATGGCGCCTGGCTACAGGGCACCCTGCATCACTGGCGCGATCCGCGTTACCACGGGCTGATTCGCACCTATCTGGAAGAGCTCGGCAACGGTGATCCACGCTGCaa                                            <  5:55719/149‑1 (MQ=255)                                                                                                    aTTGTGGTTCCTGCAACAGGTTGCGCCTACCAAGGCCGTGGATGGCGCCTGGCTACAGGGCACCCTGCATCACTGGCGCGATCCGCGTTACCACGGGCTGATTCGCACCTATCTGGAAGAGCTCGGCAACGGTGATCCACGCTGCAAc                                           >  8:204338/1‑148 (MQ=255)                                                                                                          gTTCCTGCAACAGGTTGCGCCTACCAAGGCCGTGGATGGCGCCTGGCTACAGGGCACCCTGCATCACTGGCGCGATCCGCGTTACCACGGGCTGATTCGCACCTATCTGGAAGAGCTCGGCAACGGTGATCCACGCTGCAACCAtgtg                                     <  6:284960/148‑1 (MQ=255)                                                                                                                gCAACAGGTTGCGCCTACCAAGGCCGTGGATGGCGCCTGGCTACAGGGCACCCTGCATCACTGGCGCGATCCGCGTTACCACGGGCTGATTCGCACCTATCTGGAAGAGCTCGGCAACGGTGATCCACGCTGCAACCATGTGCTGATc                               >  3:119174/1‑148 (MQ=255)                                                                                                                    cAGGTTGCGCCTACCAAGGCCGTGGATGGCGCCTGGCTACAGGGCACCCTGCATCACTGGCGCGATCCGCGTTACCACGGGCTGATTCGCACCTATCTGGAAGAGCTCGGCAACGGTGATCCACGCTGCAACCATGTGCTGATCTATCa                          <  7:204338/149‑1 (MQ=255)                                                                                                                               tACCAAGGCCGTGGATGGCGCCTGGCTACAGGGCACCCTGCATCACTGGCGCGATCCGCGTTACCACGGGCTGATTCGCACCTATCTGGAAGAGCTCGGCAACGGTGATCCACGCTGCAACCATGTGCTGATCTATCAGCGCCtgcttg               >  6:79338/1‑149 (MQ=255)                                                                                                                                 ccAAGGCCGTGGATGGCGCCTGGCTACAGGGCACCCTGCATCACTGGCGCGATCCGCGTTACCACGGGCTGATTCGCACCTATCTGGAAGAGCTCGGCAACGGTGATCCACGCTGCAACCATGTGCTGATCTATCAGCGCCtgcttgct             >  7:144775/1‑149 (MQ=255)                                                                                                                                 ccAAGGCCGTGGATGGCGCCTGGCTACAGGGCACCCTGCATCACTGGCGCGATCCGCGTTACCACGGGCTGATTCGCACCTATCTGGAAGAGCTCGGCAACGGTGATCCACGCTGCAACCATGTGCTGATCTATCAGCGCCtgcttg               <  1:124488/147‑1 (MQ=255)                                                                                                                                       ccGTGGATGGCGCCTGGCTACAGGGCACCCTGCATCACTGGCGCGATCCGCGTTACCACGGGCTGATTCGCACCTATCTGGAAGAGCTCGGCAACGGTGATCCACGCTGCAACCATGTGCTGATCTATCAGCGCCTGCTTGCTCGCCTg       >  7:39195/1‑149 (MQ=255)                                                                                                                                         gtgggtggCGCCTGGCTACAGGGCACCCTGCATCACTGGCGCGATCCGCGTTACCACGGGCTGATTCGCACCTATCTGGAAGAGCTCGGCAACGGTGATCCACGCTGCaa                                            <  7:274914/110‑1 (MQ=255)                                                                                                                                         gtgggtggCGCCTGGCTACAGGGCACCCTGCATCACTGGCGCGATCCGCGTTACCACGGGCTGATTCGCACCTATCTGGAAGAGCTCGGCAACGGTGATCCACGCTGCaa                                            >  8:274914/1‑110 (MQ=255)                                                                                                                                         gTGGATGGCGCCTGGCTACAGGGCACCCTGCATCACTGGCGCGatccacggccttggtaggcgcaacctgttgcaggaaccacaatgcgtgggcgcggttggaaaagtaacgccggggcataccttgacggcgttgtgcc              >  7:289239‑M2/1‑43 (MQ=255)                                                                                                                                         gTGGATGGCGCCTGGCTACAGGGCACCCTGCATCACTGGCGCGatccacggccttggtaggcgcaacctgttgcaggaaccacaatgcgtgggcgcggttggaaaagtaacgccggggcataccttgacggcgttgtgcc              <  8:289239‑M2/140‑98 (MQ=255)                                                                                                                                         gTGGATGGCGCCTGGCTACAGGGCACCCTGCATCACTGGCGCGCTCCGCGTGACCACGGGCTGCTTCGCCCCTATCTGGAAGAGCTCGGCAGCGGTGATCCACGCTGCACCCATGTGCTGATCTATCAGCGCCGGCTTGCTCGCCTggg     >  6:204334/1‑149 (MQ=255)                                                                                                                                          tGGATGGCGCCTGGCTACAGGGCACCCTGCATCACTGGCGCGATCCGCGTTACCACGGGCTGATTCGCACCTATCTGGAAGAGCTCGGCAACGGTGATCCACGCTGCAACCATGTGCTGATCTATCAGCGCCTGCTTGCTCGCCTGGGt    >  1:198155/1‑149 (MQ=255)                                                                                                                                            gATGGCGCCTGGCTACAGGGCACCCTGCATCACTGGCGCGatccacggccttggtaggcgcaacctgttgcaggaaccacaatgcgtgggcgcggttggaaaagtaacgccggcgcataccttgacggcgttgtgcccggtaaacggtg  <  7:284234‑M2/149‑110 (MQ=255)                                                                                                                                            gATGGCGCCTGGCTACAGGGCACCCTGCATCACTGGCGCGATCCGCGTTATCACGGGCTGATTCGCACCTATCTGGAAGAGCTCGGCAACgg                                                           >  1:81200/1‑92 (MQ=255)                                                                                                                                            gATGGCGCCTGGCTACAGGGCACCCTGCATCACTGGCGCGATCCGCGTTACCACGGGCTGATTCGCACCTATCTGGAAGAGCTCGGCAACgg                                                           <  2:81200/92‑1 (MQ=255)                                                                                                                                            gATGGCGCCTGGCTACAGGGCACCCTGCATCACTGGCGCGATCCGCGTTACCACGGGCTGATTCGCACCTATCTGGAAGAGCTCGGCAACGGTGATCCACGCTGCAACCATGTGCTGATCTATCAGCGCCTGCTTGCTCGCCTGGGTTg  >  7:265615/1‑149 (MQ=255)                                                                                                                                              |                                                                                                                                                   CAAGAAGCATACCGCCGAGGTCGCCAAGGCCTACACCGTTTACCGGGCACAACGCCGTCAAGGTATGCCCCGGCGTTACTTTTCCAACCGCGCCCACGCATTGTGGTTCCTGCAACAGGTTGCGCCTACCAAGGCCGTGGATGGCGCCTGGCTACAGGGCACCCTGCATCACTGGCGCGATCCGCGTTACCACGGGCTGATTCGCACCTATCTGGAAGAGCTCGGCAACGGTGATCCACGCTGCAACCATGTGCTGATCTATCAGCGCCTGCTTGCTCGCCTGGGTTG  >  NC_002947/3685787‑3686074

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.