New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3949811	56 (1.080)	3 (0.060)	3/252	NT	5.3%	coding (1226/1491 nt)	PP_3486	cytochrome c
	?	NC_002947	= 3949852	55 (1.120)					coding (1185/1491 nt)	PP_3486	cytochrome c

GCCCAGTGCCGGGGTCAGGCCGGTGGGCACATCGTGCAGGCCTTCGAGCGCAGCAATCAGTTGCTCGCGGCTGGCATCCCGTCCAATCTGCTTCAGCGCTTCGCTCAGCAGGCGCAACGCGCATAGCGTATTGACCTGCAATGACGCCTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3949660‑3949811 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctggcTGCGCTCGCCGGGCTGCAGCAGCGCCAGGGCCTGGATCCGCGCCAGGCGTCATTGCAGGTCAATACGCTATGCGCGTTGCGCCTGCTGAGCGAAGCGCTGAAGCAGATTGGACGGGATGCCAGCCGCGAGCAACTGATTGCTGC  <  NC_002947/3949852‑3949709                                                                                                                                                                                                                                                                                                          GCCCAGTGCCGGGGTCAGGCCGGTGGGCACATCGTGCAGGCCTTCGAGCGCAGCAATCAGTTGCTCGCGGCTGGCATCCCGTCCAATCTGCTTCAGCGCTTCGCTCAGCAGGCGCAACGCGCATAGCGTATTGACCTGCAATGACGCCT                                                                                                                                                     >  7:187931/1‑149    CAGTGCCGGGGTCAGGCCGGTGGGCACATCGTGCAGGCCTTCGAGCGCAGCAATCAGTTGCTCGCGGCTGGCATCCCGTCCAATCTGCTTCAGCGCTTCGCTCAGCAGGCGCAACGCGCATAGCGTATTGACCTGCAATGACGCCTGGC                                                                                                                                                  >  2:173951/1‑149                                                           AGTTGCTCGCGGCTGGCATCCCGTCCAATCTGCTTCAGCGCTTCGCTCAGCAGGCGCAACGCGCATAGCGTATTGACCTGCAATGACGCCTGGCTGCGCTCGCCGGGCTGCAGCAGCGCCAGGGCCTGGATCCGCGCCAGGCGTCATT                                                                                            <  8:82629/148‑1                                                                                      ATCTGCTTCAGCGCTTCGCTCAGCAGGCGCAACGCGCATAGCGTATTGACCTGCAATGACGCCTGGCTGCGCTCGCCGGGCTGCAGCAGCGCCAGGGCCTGGATCCGCGCCAGGCGTCATTGC                                                                                          >  7:108251/1‑123                                                                                      ATCTGCTTCAGCGCTTCGCTCAGCAGGCGCAACGCGCATAGCGTATTGACCTGCAATGACGCCTGGCTGCGCTCGCCGGGCTGCAGCAGCGCCAGGGCCTGGATCCGCGCCAGGCGTCATTGC                                                                                          <  8:108251/123‑1                                                                                                                                                   CCTGGCTGCGCTCGCCGGGCTGCAGCAGCGCCAGGGCCTGGATCCGCGCCAGGCGTCATTGCAGGTCAATACGCTATGCGCGTTGCGCCTGCTGAGCGAAGCGCTGAAGCAGATTGGACGGGATGCCAGCCGCGAGCAACTGATTGCTG   >  6:244050/1‑149                                                                                                                                                    CTGGCTGCGCTCGCCGGGCTGCAGCAGCGCCAGGGCCTGGATCCGCGCCAGGCGTCATTGCAGGTCAATACGCTATGCGCGTTGCGCCTGCTGAGCGAAGCGCTGAAGCAGATTGGACGGGATGCCAGCCGCGAGCAACTGATTGCTGC  >  7:229109/1‑149                                                                                                                                                                                                                                                                                                          GCCCAGTGCCGGGGTCAGGCCGGTGGGCACATCGTGCAGGCCTTCGAGCGCAGCAATCAGTTGCTCGCGGCTGGCATCCCGTCCAATCTGCTTCAGCGCTTCGCTCAGCAGGCGCAACGCGCATAGCGTATTGACCTGCAATGACGCCTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3949660‑3949811 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctggcTGCGCTCGCCGGGCTGCAGCAGCGCCAGGGCCTGGATCCGCGCCAGGCGTCATTGCAGGTCAATACGCTATGCGCGTTGCGCCTGCTGAGCGAAGCGCTGAAGCAGATTGGACGGGATGCCAGCCGCGAGCAACTGATTGCTGC  <  NC_002947/3949852‑3949709

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.