New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4036819	42 (0.810)	4 (0.080)	4/252	NT	9.4%	coding (1870/2145 nt)	PP_3557	methyl‑accepting chemotaxis transducer
	?	NC_002947	= 4036880	37 (0.750)					coding (1931/2145 nt)	PP_3557	methyl‑accepting chemotaxis transducer

GAGAGGCCGGCCGTGGCTTTGCCGTGGTCGCCGATGAGGTGCGCAACCTGGCCCAGCGCACTCAGGAGTCGGTGGAAGAAACCCGTCAGGTCATCGAAGCCCTGCAGAACGGCACCCGCGAAGTGGTCGGCGCCATGGACCACAGCCACCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4036667‑4036819 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caccgccTGGCCAATGCGCTGCAATGCCGTGACGGCTTGGCCGACCTGCTCCACGCCACCTTGGGCCTGGCGGTGGCTGTGGTCCATGGCGCCGACCACTTCGCGGGTGCCGTTCTGCAGGGCTTCGATGACCTGACGGGTTTCTTCCACCGAC  <  NC_002947/4036880‑4036734                                                                                                                                                                                                                                                                                                              GAGAGGCCGGCCGTGGCTTTGCCGTGGTCGCCGATGAGGTGCGCAACCTGGCCCAGCGCACTCAGGAGTCGGTGGAAGAAACCCGTCAGGTCATCGAACCCCTGCAGAACGGCACCCGCGAAGTGGTCGGCGCCATGGACCACAGCCAC                                                                                                                                                         >  5:293260/1‑149      GCCGGCCGTGGCTTTGCCGTGGTCGCCGATGAGGTGCGCAACCTGGCCCAGCGCACTCAGGAGTCGGTGGAAGAAACCCGTCAGGTCATCGAAGCCCTGCAGAACGGCACCCGCGAAGTGGTCGGCGCCATGGACCACAGCCACCGC                                                                                                                                                      >  6:280914/1‑147                                              ACCTGGCCCAGCGCACTCAGGAGTCGGTGGAAGAAACCCGTCAGGTCATCGAAGCCCTGCAGAACGGCACCCGCGAAGTGGTCGGCGCCATGGACCACAGCCACCGCC                                                                                                                                                     >  1:285991/1‑108                                              ACCTGGCCCAGCGCACTCAGGAGTCGGTGGAAGAAACCCGTCAGGTCATCGAAGCCCTGCAGAACGGCACCCGCGAAGTGGTCGGCGCCATGGACCACAGCCACCGCC                                                                                                                                                     <  2:285991/108‑1                                                    CCCAGCGCACTCAGGAGTCGGTGGAAGAAACCCGTCAGGTCATCGAAGCCCTGCAGAACGGCACCCGCGAAGTGGTCGGCGCCATGGACCACAGCCACCGCCTGGCCAATGCGCTGCAATGCCGTGACGGCTTGGCCGACCTGCTCCAC                                                                                                      >  4:41025/1‑149                                                                 GGAGTCGGTGGAAGAAACCCGTCAGGTCATCGAAGCCCTGCAGAACGGCACCCGCGAAGTGGTCGGCGCCATGGACCACAGCCACCGCCTGGCCAATGCGCTGCAATGCCGTGACGGCTTGGCCGACCTGCTCCACGCCACCTTGGGCC                                                                                         >  3:12448/1‑149                                                                       GGTGGAAGAAACCCGTCAGGTCATCGAAGCCCTGCAGAACGGCACCCGCGAAGTGGTCGGCGCCATGGACCACAGCCACCGCCTGGCCAATGCGCTGCAATGCCGTGACGGCTTGGCCGACCTGCTCCACGCCACCTTGGGCCTGGCGG                                                                                   <  4:12448/149‑1                                                                        GTGGAAGAAACCCGTCAGGTCATCGAAGCCCTGCAGAACGGCACCCGCGAAGTGGTCGGCGCCATGGACCACAGCCACCGCCTGGCCAATGCGCTGCAATGCCGTGACGGCTTGGCCGACCTGCTCCACGCCACCTTGGGCCTGGCGGT                                                                                  <  3:41025/149‑1                                                                                                                                                     CCGCCTGGCCAATGCGCTGCAATGCCGTGACGGCTTGGCCGACCTGCTCCACGCCACCTTGGGCCTGGCGGTGGCTGTGGTCCATGGCGCCGACCACTTCGCGGGTGCCGTTCTGCAGGGCTTCGATGACCTGACGGGTTTCTTCCACC     <  8:190308/149‑1                                                                                                                                                        CCTGGCCAATGCGCTGCAATGCCGTGACGGCTTGGCCGACCTGCTCCACGCCACCTTGGGCCTGGCGGTGGCTGTGGTCCATGGCGCCGACCACTTCGCGGGTGCCGTTCTGCAGGGCTTCGATGACCTGACGGGTTTCTTCCACCGAC  <  1:303624/149‑1                                                                                                                                                                                                                                                                                                              GAGAGGCCGGCCGTGGCTTTGCCGTGGTCGCCGATGAGGTGCGCAACCTGGCCCAGCGCACTCAGGAGTCGGTGGAAGAAACCCGTCAGGTCATCGAAGCCCTGCAGAACGGCACCCGCGAAGTGGTCGGCGCCATGGACCACAGCCACCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4036667‑4036819 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caccgccTGGCCAATGCGCTGCAATGCCGTGACGGCTTGGCCGACCTGCTCCACGCCACCTTGGGCCTGGCGGTGGCTGTGGTCCATGGCGCCGACCACTTCGCGGGTGCCGTTCTGCAGGGCTTCGATGACCTGACGGGTTTCTTCCACCGAC  <  NC_002947/4036880‑4036734

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.