New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4036819	42 (0.810)	4 (0.080)	4/252	NT	9.4%	coding (1870/2145 nt)	PP_3557	methyl‑accepting chemotaxis transducer
	?	NC_002947	= 4036880	37 (0.750)					coding (1931/2145 nt)	PP_3557	methyl‑accepting chemotaxis transducer

GTCGGTGGAAGAAACCCGTCAGGTCATCGAAGCCCTGCAGAACGGCACCCGCGAAGTGGTCGGCGCCATGGACCACAGCCACCGCCAGGCCCAAGGTGGCGTGGAGCAGGTCGGCCAAGCCGTCACGGCATTGCAGCGCATTGGCCAGGCGGTGACGGTGATCACCGACATGAACCTGCAGATCGCCTCTGCCGCCGAGGAGCAAAGCGCGGTAGCCGAGGAAATCAACAGCAACGTGGCGACCATTCGTGATGTCACTGAATCCCTGTCTGGCCAGGCCAACGAGTCGGCGC  >  NC_002947/4036734‑4037026                                                                                                                                                   |                                                                                                                                                   gTCGGTGGAAGAAACCCGTCAGGTCATCGAAGCCCTGCAGAACGGCACCCGCGAAGTGGTCGGCGCCATGGACCACAGCCACCGCCAGGCCCAAGGTGGCGTGGAGCAGGTCGGCCAAGCCGTCACGGCATTGCAGCGCATTGGCCAgg                                                                                                                                                  <  1:303624‑M2/149‑3 (MQ=255)    ggTGGAAGAAACCCGTCAGGTCATCGAAGCCCTGCAGAACGGCACCCGCGAAGTGGTCGGCGCCATGGACCACAGCCACCGCCAGGCCCAAGGTGGCGTGGAGCAGGTCGGCCAAGCCGTCACGGCATTGCAGCGCATTGGCCAggcgg                                                                                                                                               <  8:190308‑M2/149‑6 (MQ=255)        gaagaaACCCGTCAGGTCATCGAAGCCCTGCAGAACGGCACCCGCGAAGTGGTCGGCGCCATGGACCACAGCCACCGCCAGGCCCAAGGTGGCGTGGAGCAGGTCGGCCAAGCCGTCACGGCATTGCAGCGCATTGGCCAGGcggtgac                                                                                                                                           >  3:96944/1‑149 (MQ=255)          agaaACCCGTCAGGTCATCGAAGCCCTGCAGAACGGCACCCGCGAAGTGGTCGGCGCCATGGACCACAGCCACCGCCAGGCCCAAGGTGGCGTGGAGCAGGTCGGCCAAGCCGTCACGGCATTGCAGCGCATTGGCCAGGcggtgacgg                                                                                                                                         <  1:327244/149‑1 (MQ=255)          agaaACCCGTCAGGTCATCGAAGCCCTGCAGAACGGCACCCGCGAAGTGGTCGGCGCCATGGACCACAGCCACCGCCAGGCCCAAGGTGGCGTGGAGCAGGTCGGCCAAGCCGTCACGGCATTGCAGCGCATTGGCCAGGcggtgacgg                                                                                                                                         <  3:238454/149‑1 (MQ=255)           gaaACCCGTCAGGTCATCGAAGCCCTGCAGAACGGCACCCGCGAAGTGGTCGGCGCCATGGACCACAGCCACCGCCAGGCCCAAGGTGGCGTGGAGCAGGTCGGCCAAGCCGTCACGGCATTGCAGCGCATTGGCCAGGcggtgacggt                                                                                                                                        <  5:244549/149‑1 (MQ=255)           gaaACCCGTCAGGTCATCGAAGCCCTGCAGAACGGCACCCGCGAAGTGGTCGGCGCCATGGACCACAGCCACCGCCAGGCCCAAGGTGGCGTGGAGCAGGTCGGCCAAGCCGTCACGGCATTGCAGCGCATTGGCCAGGcggtgacggt                                                                                                                                        <  2:234568/149‑1 (MQ=255)                ccGTCAGGTCATCGAAGCCCTGCAGAACGGCACCCGCGAAGTGGTCGGCGCCATGGACCACAGCCACCGCCAGGCCCAAGGTGGCGTGGAGCAGGTCGGCCAAGCCGTCACGGCATTGCAGCGCATTGGCCAGGCGGTGACGGTGATCa                                                                                                                                   >  5:208272/1‑149 (MQ=255)                     aGGTCATCGAAGCCCTGCAGAACGGCACCCGCGAAGTGGTCGGCGCCATGGACCACAGCCACCGCCAGGCCCAAGGTGGCGTGGAGCAGGTCGGCCAAGCCGTCACGGCATTGCAGCGCATTGGCCAGGCGGTGACGGTGATCACCGa                                                                                                                               <  2:303624/148‑1 (MQ=255)                     aGGTCATCGAAGCCCTGCAGAACGGCACCCGCGAAGTGGTCGGCGCCATGGACCACAGCCACCGCCAGGCCCAAGGTGGCGTGGAGCAGGTCGGCCAAGCCGTCACGGCATTGCAGCGCATTGGCCAGGCGGTGACGGTGATCACCGAc                                                                                                                              <  1:59669/149‑1 (MQ=255)                        tCATCGAAGCCCTGCAGAACGGCACCCGCGAAGTGGTCGGCGCCATGGACCACAGCCACCGCCAGGCCCAAGGTGGCGTGGAGCAGGTCGGCCAAGCCGTCACGGCATTGCAGCGCATTGGCCAGGCGGTGACGGTGATCACCGACATg                                                                                                                           >  4:278946/1‑149 (MQ=255)                              aaGCCCTGCAGAACGGCACCCGCGAAGTGGTCGGCGCCATGGACCACAGCCACCGCCAGGCCCAAGGTGGCGTGGAGCAGGTCGGCCAAGCCGTCACGGCATTGCAGCGCATTGGCCAGGCGGTGACGGTGATCACCGACATGAACCtt                                                                                                                     <  4:96944/149‑2 (MQ=255)                                gCCCTGCAGACCGGCACCCGCGAAGTGGTCGGCGCCATGGACCACAGCCACCGCCAGGCCCAAGGTGGCGTGGAGCAGGTCGGCCAAGCCGTCACGGCATTGCAGCGCATTGGCCAGGCGGTGACGGTGATCACCGACATGAACCTGCa                                                                                                                   <  4:93648/149‑1 (MQ=255)                                      cAGAACGGCACCCGCGAAGTGGTCGGCGCCATGGACCACAGCCACCGCCAGGCCCAAGGTGGCGTGGAGCAGGTCGGCCAAGCCGTCACGGCATTGCAGCGCATTGGCCAGGCGGTGACGGTGATCACCGACATGAACCTGCAGATCGc                                                                                                             <  3:278946/149‑1 (MQ=255)                                         aaCGGCACCCGCGAAGTGGGCGGCGCCATGGACCACAGCCACCGCCAGGCCCAAGGTGGCGTGGAGCAGGTCGGCCAAGCCGTCACGGCATTGCAGCGCATTGGCCAGGCGGTGACGGTGATCACCGACATGAACCTGCAGATCGCctc                                                                                                          <  4:317460/149‑1 (MQ=255)                                               aCCCGCGAAGTGGTCGGCGCCATGGACCACAGCCACCGCCAGGCCCAAGGTGGCGTGGAGCAGGTCGGCCAAGCCGTCACGGCATTGCAGCGCATTGGCCAGGCGGTGACGGTGATCACCGACATGAACCTGCAGAGCGCCTCTgccgc                                                                                                    >  8:64631/1‑149 (MQ=255)                                                 ccGCGAAGTGGTCGGCGCCATGGACCACAGCCACCGCCAGGCCCAAGGTGGCGTGGAGCAGGTCGGCCAAGCCGTCACGGCATTGCAGCGCATTGGCCAGGCGGTGACGGTGATCACCGACATGAACCTGCAGATCGCCTCTgccgcc                                                                                                   >  1:217287/1‑148 (MQ=255)                                                    cgAAGTGGTCGGCGCCATGGACCACAGCCACCGCCAGGCCCAAGGTGGCGTGGAGCAGGTCGGCCAAGCCGTCACGGCATTGCAGCGCATTGGCCAGGCGGTGACGGTGATCACCGACATGAACCTGCAGATCGCCTCTGCCGCCgagg                                                                                               <  7:30511/149‑1 (MQ=255)                                                         tGGTCGGCGCCATGGACCACAGCCACCGCCAGGCCCAAGGTGGCGTGGAGCAGGTCGGCCAAGCCGTCACCGCATTGCAGCGCATTGGCCAGGCGGTGACGGTGATCACCGACATGAACCTGCAGATCGCCTCTGCCGACGAGGCGCa                                                                                           >  5:23051/1‑148 (MQ=255)                                                               gcgcCATGGACCACAGCCACCGCCAGGCCCAAGGTGGCGTGGAGCAGGTCGGCCAAGCCGTCACGGCATTGCAGCTCATTGGCCAGGCGGTGACGGTGATCACCGACATGAACCTGCAGATCGCCTCTGCCGCCGAGGAGCAAAGcgcg                                                                                    <  3:138453/149‑1 (MQ=255)                                                                  ccATGGACCACAGCCACCGCCAGGCCCAAGGTGGCGTGGAGCAGGTCGGCCAAGCCGTCACGGCATTGCAGCGCATTGGCCAGGCGGTGACGGTGATCACCGACATGAACCTGCAGATCGCCTCTGCCGCCGAGGAGCAAAGCGCGGTa                                                                                 <  2:217287/149‑1 (MQ=255)                                                                    aTGGACCACAGCCACCGCCAGGCCCAAGGTGGCGTGGAGCAGGTCGGCCAAGCCGTCACGGCATTGCATCGCATTGGCCAGGCGGTGACGGTGATCACCGACATGAACATGCAGATCGCCTCTTCCGCCGAGGAGCAAAGCGCGGTAGc                                                                               <  6:324144/149‑1 (MQ=255)                                                                       gACCACAGCCACCGCCAGGCCCAAGGTGGCGTGGAGCAGGTCGGCCAAGCCGTCACGGCATTGCAGCGCATTGGCCAGGCGGTGACGGTGATCACCGACATGAACCTGCAGATCGCCTCTGCCGCCGAGGAGCAAAGCGCGGTAGcc                                                                              >  1:20303/1‑147 (MQ=255)                                                                             aGCCACCGCCAGGCCCAAGGTGGCGTGGAGCAGGTCGGCCAAGCCGTCACGGCATTGCAGCGCATTGGCCAGGCGGTGACGGTGATCACCGACATGAACCTGCAGATCGCCTCTGCCGCCGAGGAGCAAAGCGCGGTAGCCGAGGAAAt                                                                      >  2:117732/1‑149 (MQ=255)                                                                                 aCCGCCAGGCCCAAGGTGGCGTGGAGCAGGTCGGCCAAGCCGTCACGGCATTGCAGCGCATTGGCCAggcggtggctgtggtccatggcgccgaccacttcgcgggtgccgttctgcagggcttcgatgacctgacgggtttcttccac                                                                  <  3:41025‑M2/149‑83 (MQ=255)                                                                                  ccGCCAGGCCCAAGGTGGCGTGGAGCAGGTCGGCCAAGCCGTCACGGCATTGCAGCGCATTGGCCAggcggtggctgtggtccatggcgccgaccacttcgcgggtgccgttctgcagggcttcgatgacctgacgggtttcttccacc                                                                 <  4:12448‑M2/149‑84 (MQ=255)                                                                                  ccGCCAGGCCCAAGGTGGCGTGGAGCAGGTCGGCCAAGCCGTCACGGCATTGCAGCGCATTGGCCAGGCGGTGACGGTGATCACCGACATGAACCTGCAGATCGCCTCTGCCGCCGAGGAGCAAAGCGCGGTAGCCGAGGAAATCaa                                                                   >  3:216725/1‑147 (MQ=255)                                                                                   cGCCAGGCCCAAGGTGGCGTGGAGCAGGTCGGCCAAGCCGTCACGGCATTGCAGCGCATTGGCCAGGCGGTGACGGTGATCACCGACATGAACCTGCAGATCGCCTCTGCCGCCGAGGAGCAAAGCGCGGTAGCCGAGGAAATCAACAg                                                                <  6:208272/149‑1 (MQ=255)                                                                                        ggCCCAAGGTGGCGTGGAGCAGGTCGGCCAAGCCGTCACGGCATTGCAGCGCATTGGCCAggcggtggctgtggtccatggcgccgaccacttcgcgggtgccgttctgcagggcttcgatgacctgacgggtttcttccaccgactcc                                                           >  3:12448‑M2/1‑60 (MQ=255)                                                                                            cAAGGTGGCGTGGAGCAGGTCGGCCAAGCCGTCACGGCATTGCAGCGCATTGGCCAGGCGGTGACGGTGATCACCGACATGAACCTGCAGATCGCCTCTGCCGCCGAGGAGCAAAGCGCGGTAGCCGAGGAAATCAACAGCAACGTGGc                                                       <  7:190308/149‑1 (MQ=255)                                                                                              aGGTGGCGTGGAGCAGGTCGGCCAAGCCGTCACGGCATTGCAGCGCATTGGCCAGGCGGTGACGGTGATCACCGACATGAACCTGCAGATCGCCTCTGCCGCCGAGGAGCAAAGCGCGGTAGCCGAGGAAATCAACAGCAACGTgg                                                        <  4:318482/146‑1 (MQ=255)                                                                                              aGGTGGCGTGGAGCAGGTCGGCCAAGCCGTCACGGCATTGCAGCGCATTGGCCAGGCGGTGACGGTGATCACCGACATGAACCTGCAGATCGCCTCTGCCGCCGAGGAGCAAAGCGCGGTAGCCGAGGAAATCAACAGCAACGTgg                                                        >  3:318482/1‑146 (MQ=255)                                                                                              aGGTGGCGTGGAGCAGGTCGGCCAAGCCGTCACGGCATTGCAGCGCATTGGCCAGGCGGTGACGGTGATCACCGACATGAACCTGCAGATCGCCTCTGCCGACGAGGAGCAAAGCGCGGTAGCCGAGGAAATCAACAGCAACGTGGCGa                                                     >  8:44463/1‑149 (MQ=255)                                                                                                gTGGCGTGGAGCAGGTCGGCCAAGCCGTCACGGCATTGCAGCGCATTGGCCAGGCGGTGACGGTGATCACCGACATGAACCTGCAGATCGCCTCTGCCGCCGAGGAGCAAAGCGCGGTAGCCGAGGAAATCAACAGCAACGTGGCGAcc                                                   <  4:216725/149‑1 (MQ=255)                                                                                                     gTGGAGCAGGTCGGCCAAGCCGTCACGGCATTGCAGCGCATTGGCCAggcggtggctgtggtccatggcgccgaccacttcgcgggtgccgttctgcagggcttcgatgacctgacgggtttcttccaccgactcctgagtgcgctggg                                              >  4:41025‑M2/1‑47 (MQ=255)                                                                                                         aGCAGGTCGGCCAAGCCGTCACGGCATTGCAGCGCATTGGCCAGGCGGTGACGGTGATCACCGACATGAACCTGCAGATCGCCTCTGCCGCCGAGGAGCAAAGCGCGGTAGCCGAGGAAATCAACAGCAACGTGGCGACCATTCGTGAt                                          <  2:20303/149‑1 (MQ=255)                                                                                                          gCAGGTCGGCCAAGCCGTCACGGCATTGCAGCGCATTGGCCAGGCGGTGACGGTGATCACCGACATGAACCTGCAGATCGCCTCTGCCGCCgag                                                                                                >  4:229554/1‑94 (MQ=255)                                                                                                          gCAGGTCGGCCAAGCCGTCACGGCATTGCAGCGCATTGGCCAGGCGGTGACGGTGATCACCGACATGAACCTGCAGATCGCCTCTGCCGCCgag                                                                                                <  3:229554/94‑1 (MQ=255)                                                                                                              gTCGGCCAAGCCGTCACGGCATTGCAGCGCATTGGCCAGGCGGTGACGGTGATCACCGACATGAACCTGCAGATCGCCTCTGCCGCCGAGGAGCAAAGCGCGGTAGCCGAGGAAATCAACAGCAACGTGGCGACCATTCGTGATGTCAc                                     >  7:247850/1‑149 (MQ=255)                                                                                                               tCGGCCAAGCCGTCACGGCATTGCAGCGCATTGGCCAGGCGGTGACGGTGATCACCGACATGAACCTGCAGATCGCCTCTGCCGCCGAGGAGCAAAGCGCGGTAGCCGAGGAAATCAACAGCAACGTGGCGACCATTCGTGATGTCACt                                    <  6:103673/149‑1 (MQ=255)                                                                                                               tCGGCCAAGCCGTCACGGCATTGCAGCGCATTGGCCAGGCGGTGACGGTGATCACCGACATGAACCTGCAGATCGCCTCTGCCGCCGAGGAGCAAAGCGCGGTAGCCGAGGAAATCAACAGCAACGTGGCGACCATTCGTGATGTCACt                                    <  1:117732/149‑1 (MQ=255)                                                                                                                               ggCATTGCAGCGCATTGGCCAGGCGGTGACGGTGATCACCGACATGAACCTGCAGATCGCCTCTGCCGCCGAGGAGCAAAGCGCGGTAGCCGAGGAAATCAACAGCAACGTGGCGACCATTCGTGATGTCACTGAATCCCTGTCTggc                     >  6:88537/1‑148 (MQ=255)                                                                                                                               ggCATTGCAGCGCATTGGCCAGGAGGTGACGGTGATCACCGACATGAACCTGCAGATCGCCTCTGCCGCCGAGGAGCAAAGCGCGGTAGCCGAGGAAATCAACAGCAACGTGGCGACCATTCGTGATGTCACTGAATCCCTGTCTggc                     >  3:69667/1‑148 (MQ=255)                                                                                                                                  aTTGCAGCGCATTGGCCAGGCGGTGACGGTGATCACCGACATGAACCTGCAGATAGCCTCTGCCGCCGAGGAGCAAAGCGCGGTAGCCGAGGAAATCAACAGCAACGTGGCGACAATTCGTGATGTCACTGAATCCCTGTCTggccagg                 >  6:314759/1‑149 (MQ=255)                                                                                                                                      cAGCGCATTGGCCAGGCGGTGACGGTGATCACCGACATGAACCTGCAGATCGCCTCTGCCGCCGAGGAGCAAAGCGCGGTAGCCGAGGAAATCAACAGCAACGTGGCGACCATTCGTGATGTCACTGAATCCCTGTCTGGCCAGGCCaa             >  5:185395/1‑149 (MQ=255)                                                                                                                                      cAGCGCATTGGCCAGGCGGTGACGGTGATCACCGACATGAACCTGCAGATCGCCTCTGCCGCCGAGGAGCAAAGCGCGGTAGCCGAGGAAATCAACAGCAACGTGGCGACCATTCGTGATGTCACTGAATCCCTGTCTGGCCAGGCCaa             >  8:37602/1‑149 (MQ=255)                                                                                                                                        gcgcATTGGCCAGGCGGTGACGGTGATCACCGACATGAACCTGCAGATCGCCTCTGCCGCCGAGGAGCAAAGCGCGGTAGCCGAGGAAATCAACAGCAACGTGGCGACCATTCGTGATGTCACTGAATCCCTGTCTGGCCAGGCCAAc            >  4:295451/1‑148 (MQ=255)                                                                                                                                         cgcATTGGCCAGGCGGTGACGGTGATCACCGACATGAACCTGCAGATCGCCTCTGCCGCCGAGGAGCAAAGCGCGGTAGCCGAGGAAATCAACAGCAACGTGGCGACCATTCGTGATGTCACTGAATCCCTGTCTGGCCAGGCCAACGa          <  3:295451/149‑1 (MQ=255)                                                                                                                                                 ccAGGCGGTGACGGTGATCACCGACATGAACCTGCAGATCGCCTCTGCCGCCGAGGAGCAAAGCGCGGTAGCCGAGGAAATCAACAGCAACGTGGCGACCATTCGTGATGTCACTGAATCCCTGTCTGGCCAGGCCACCGAGTCGgcgc  >  8:76569/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                   GTCGGTGGAAGAAACCCGTCAGGTCATCGAAGCCCTGCAGAACGGCACCCGCGAAGTGGTCGGCGCCATGGACCACAGCCACCGCCAGGCCCAAGGTGGCGTGGAGCAGGTCGGCCAAGCCGTCACGGCATTGCAGCGCATTGGCCAGGCGGTGACGGTGATCACCGACATGAACCTGCAGATCGCCTCTGCCGCCGAGGAGCAAAGCGCGGTAGCCGAGGAAATCAACAGCAACGTGGCGACCATTCGTGATGTCACTGAATCCCTGTCTGGCCAGGCCAACGAGTCGGCGC  >  NC_002947/4036734‑4037026

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.