| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4079414 = | 51 (0.980) | 4 (0.090) | 4/218 | NT | 9.3% | intergenic (‑218/+166) | sdaC/amaC | serine:H+ symport permease/D‑lysine aminotransferase |
| ? | NC_002947 | 4079531 = | 36 (0.850) | intergenic (‑335/+49) | sdaC/amaC | serine:H+ symport permease/D‑lysine aminotransferase | |||||
AAGTAACTCGCCAACGGGCCAACTGCGGCCCCTCCTGTGGGGCGCGGTTGGACTTTGTGGGAGCGGCCTTGCGTCGCGAAAAGGGTGCGGAGCGCCCCTACGATTGCAGCTTTGCCGCTGAAATTGCTGGGGCCGCTTTGCGGCCCTATCGCGACGCAAGGCCGCTCCCACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4079585‑4079414‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgcgacgcaaggccgctcccacaAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCTGAACGGCAGCGAACGCTTCGGCAACCCGTTGCAGGTTGGCCGGGCGCAGGCCGGACATGCACACACGGCCGCTGTCGATCAGGTACACG > NC_002947/4079531‑4079676 AAGTAACTCGCCAACGGGCCAACTGCGGCCCCTCCTGTGGGGCGCGGTTGGACTTTGTGGGAGCGGCCTTGCGTCGCGAAAAGGGTGCGGAGCGCCCCTACGATTGCAGCTTTGCCGCTGAAATTGCTGGGGCCGCTTTGCGGCCCTAT > 6:324900/1‑149AAGTAACTCGCCAACGGGCCAACTGCGGCCCCTCCTGTGGGGCGCGGTTGGACTTTGTGGGAGCGGCCTTGCGTCGCGAAAAGGGTGCGGAGCGCCCCTACGATTGCAGCGTTGGCGCTGAAATTGCTGGGGCCGCTTTGCGGCCCTAT > 1:73801/1‑149 GTAACTCGCCAACGGGCCAACTGCGGCCCCTCCTGTGGGGCGCGGTTGGACTTTGTGGGAGCGGCCTTGCGTCGCGAAAAGGGTGCGGAGCGCCCCTACGATTGCAGCTTTGCCGCTGAAATTGCTGGGGCCGCTTTGCGGCCCTATCG < 4:306972/149‑1 TCGCCAACGGGCCAACTGCGGCCCCTCCTGTGGGGCGCGGTTGGACTTTGTGGGAGCGGCCTTGCGTCGGGAAAAGGGTGCGGAGCGCCCCTACGATTGCAGCTTTGCCGCTGAAATTGCTGGGGCCGCTTTGCGGCCCTATCGCGACG > 2:88572/1‑149 TCGCCAACGGGCCAACTGCGGCCCCTCCTGTGGGGCGCGGTTGGACTTTGTGGGAGCGGCCTTGCGTCGCGGAAAGGGTGCGGAGCGGCCCTACGATTGCCGCTTTGCCGCGGAAATTGCTGGGGCCGCTTTGCGGCCCTATCGCGACG > 5:273201/1‑149 TCGCCAACGGGCCAACTGCGGCCCCTCCTGTGGGGCGCGGTTGGACTTTGTGGGAGCGGCCATTCGTCGCGCAAAGGGTGCGGAGCGCCCCAACGATTTCAGCTTTTCCGCTGAAATTTCTGGGGCCCCTTTGCGGCCCTATAGCGACG > 4:121682/1‑149 CCAACGGGCCAACTGCGGCCCCTCCTGTGGGGCGCGGTTGGACTTTGTGGGAGCGGCCTTGCGTCGCGAAAAGGGTGCGGAGCGCCCCTACGATTGCAGCTTTGCCGCTGAAATTGCTGGGGCCGCTTTGCGGCCCTATCGCGACGCAA < 3:255386/149‑1 CCAACGGGCCAACTGCGGCCCCTCCTGTGGGGCGCGGTTGGACTTTGTGGGAGCGGCCTTGCGTCGCGAAAAGGGTGCGGAGCGCCCCTACGATTGCAGCTTTGCCGCTGAAATTGCTGGGGCCGCTTTGCGGCCCTATCGCGACGCAA < 7:11548/149‑1 CAACGGGCCAACTGCGGCCCCTCCTGTGGGGCGCGGTTGGACTTTGTGGGAGCGGCCTTGCGTCGCGAAAAGGGTGCGGAGCGCCCCTACGATTGCAGCTTTGCCGCTGAAATTGCTGGGGCCGCTTTGCGGCCCTATCGCGACGCAAG < 7:112879/149‑1 GGGCCAACTGCGGCCCCTCCTGTGGGGCGCGGTTGGACTTTGTGGGAGCGGCCTTGCGTCGCGAAAAGGGTGCGGAGCGCCCCTACGATTGCAGCTTTGCCGCTGAAATTGCTGGGGCCGCTTTGCGGCCCTATCGCGACGCAAGGCCG < 5:324900/149‑1 ggctACTGCGCCCCGTCCTCTCGGCCGCCGAAGCACTTTGTGGGAGCGGCCTTGCGTCGCGAAAAGGGTGCGGAGCGCCCCTACGATTGCAGCTTTGCCGCTTAAATTGCTGGGGCCGCTTTGCGGCCCTATCGCGACGCAAGGCCGCT < 2:128706/145‑1 TTGCGTCGCGAAAAGGGTGCGGAGCGCCCCTACGATTGCAGCTTTGCCGCTGAAATTGCTGGGGCCGCTTTGCGGCCCTATCGCGACGCAAGGCCGCTCCCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGG > 3:138687/1‑149 GCGTCGCGAAAAGGGTGCGGAGCGCCCCTACGATTGCAGCTTTGCCGCTGAAATTGCTGGGGCCGCTTTGCGGCCCTATCGCGACGCAAGGCCGCTCCCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGC > 5:48440/1‑148 AAGGGTGCGGAGCGCCCCTACGATTGCAGCTTTGCCGCTGAAATTGCTGGGGCCGCTTTGCGGCCCTATCGCGACGCAAGGCCGCTCCCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCT < 4:138687/149‑1 CGATTGCAGCTTTGCCGCTGAAATTGCTGGGGCCGCTTTGCGGCCCTATCGCGACGCAAGGCCGCTCCCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCTGAACGGCAGCGAACGCTTCG < 6:48440/149‑1 GCGACGCAAGGCCGCTCCCACAAAGTCCAACCGCGCCCCACAGGAGGCGCCGCAGTTGGCCCGTTGGAGAGTAACTTCAGAACCGCAGAGAACGCTTCCGCAACCCGATGCAGCTTGGCCGGGCGAAGGCCGGACATGCACACACGGCC > 8:116452/1‑149 GCAAGGCCGCTCCCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCTGAACGGCAGCGAACGCTTCGGCAACCCGTTGCAGGTTGGCCGGGCGCAGGCCGGACATGCACACACGGCC < 8:166910/144‑1 GCAAGGCCGCTCCCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCTGAACGGCAGCGAACGCTTCGGCAACCCGTTGCAGGTTGGCCGGGCGCAGGCCGGACATGCACACACGGCC > 7:166910/1‑144 GCAAGGCCGCTCCCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTT < 3:199179/72‑1 GCAAGGCCGCTCCCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTT > 4:199179/1‑72 CAAGGCCGCTCCCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCTGAACGGCAGCGAACGCTTCGGCAACCCGTTGCAGGTTGGCCGGGCGCAGGCCGGACATGCACACACGGCCGCTGTC < 2:295984/149‑1 acGGCCGCTCCCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCTGAACGGCAGCGAACGCTTCGGCAACCCGTTGCAGGTTGGCCGGGCGCAGGCCGGACATGCACATACGGCCGCTGTCG < 5:39732/147‑1 CGCTCCCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCTGAACGGCAGCGAACGCTTCGGCAACCCGTTGCAGGTTGGCCGGGCGCAGGCCGGACATGCACACACGGCCGCTGTCGATCAG > 3:258746/1‑149 GCTCCCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCTGAACGGCAGCGAACGCTTCGGCAACCCGTTGCAGGTTGGCCGGGCGCAGGCCGGACATGCACACACGGCCGCTGTCGATCAGG < 3:306972/149‑1 CACAAAGTCCAACCGCGCCCCACAGGAGGGCCCCCAGTTGGCCCGTTGGCGAGTTACTTCTGAACGGCAGCGAACGCTTCGGCAACACGTTGCAGGTTGGCCGGGCGCAGGCCGGACATGCACACACCCCCGCTGTCGATCAGGTACAC > 8:88914/1‑149 ACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCTGAACGGCAGCGAACGCTTCGGCAACCCGTTGCAGGTTGGCCGGGCGCAGGCCGGACATGCACACACGGCCGCTGTCGATCAGGTACACG > 1:22907/1‑149 AAGTAACTCGCCAACGGGCCAACTGCGGCCCCTCCTGTGGGGCGCGGTTGGACTTTGTGGGAGCGGCCTTGCGTCGCGAAAAGGGTGCGGAGCGCCCCTACGATTGCAGCTTTGCCGCTGAAATTGCTGGGGCCGCTTTGCGGCCCTATCGCGACGCAAGGCCGCTCCCACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4079585‑4079414‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgcgacgcaaggccgctcccacaAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCTGAACGGCAGCGAACGCTTCGGCAACCCGTTGCAGGTTGGCCGGGCGCAGGCCGGACATGCACACACGGCCGCTGTCGATCAGGTACACG > NC_002947/4079531‑4079676 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |