New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4253766	44 (0.850)	3 (0.060)	3/250	NT	6.4%	intergenic (‑88/+109)	rocE/PP_3728	amino acid permease RocE/two‑component system sensor histidine kinase/response regulator
	?	NC_002947	= 4253801	47 (0.960)					intergenic (‑123/+74)	rocE/PP_3728	amino acid permease RocE/two‑component system sensor histidine kinase/response regulator

ACAGCATGAAGATGTGCCGGCTTTTCAGGGCGCGGGTGAGCTGGATTTTTTCAACGCTGTCAGTCATGGCACACCTCGCCATTGCGG‑CCGGTGCGTGGGAGGGTTCGAATGAGGGGCTGAGCGCTACGGCATGTCATTATTCTTGTCTCCAATAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4253612‑4253766 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccaataaTCCATGGCAACCGTGTTGCACACGGTCCATGAGGCTTATTGGAGACAAGAATAATGACATGCCGTAGCGCTCAGCCCCTCATTCGAACCCTCCCACGCACCGGCCGCAATGGCGAGGTGTGCCATGACTGACAGCGTTGAAAAAATC  <  NC_002947/4253801‑4253655                                                                                                                                                                                                                                                                                                                 ACAGCATGAAGATGTGCCGGCTTTTCAGGGCGCGGGTGAGCTGGATTTTTTCAACGCTGTCAGTCATGGCACACCTCGCCATTGCGG‑CCGGTGCGTGGGAGGGTTCGAATGAGGGGCTGAGCGCTACGGCATGTCATTATTCTTGTCTC                                                                                                                                                           <  2:181408/149‑1       TGAAGATGTGCCGGCTTTTCAGGGCGCGGGTGAGCTGGATTTTTTCAACGCTGTCAGTCATGGCACACCTCGCCATTGCGG‑CCGGTGCGTGGGAGGGTTCGAATGAGGGGCTGAGCGCTACGGCATGTCATTATTCTTGTCTCCAATAA                                                                                                                                                     >  6:313176/1‑149       TGAAGATGTGCCGGCTTTTCAGGGCGCGGGTGAGCTGGATTTTTTCAACGCTGTCAGTCATGGCACACCTCGCCATTGCGG‑CCGGTGCGTGGGAGGGTTCGAATGAGGGGCTGAGCGCTACGGCATGTCATTATTCTTGTCTCCAAT                                                                                                                                                       >  2:143712/1‑147                                                  TTCAACGCTGTCATTGATTGCACACCTCGCCATTGCGGCCCCCCATGTGGGAGGGTTCGAATGAGGGGCTGAGCGCTACGGCATGTCATTATTCTTGTCTCCAATAATCCATGGCAACCGTGTTGCACACGGTCCATGAGGCTTATTG                                                                                                            <  1:272358/148‑1                                                  TTCAACGCTGTCAGTCATGGCACACCTCGCCATTGCGG‑CCGGTGCGTGGGAGGGTTCGAATGAGGGGCTGAGCGCTACGGCATGTCATTATTCTTGTCTCCAATAATCCATGGCAACCGTGTTGCACACGGTCCATGAGGCTTATTGG                                                                                                           <  5:313176/148‑1                                                   TCAACGCTGTCAGTCATGGCACACCTCGCCATTGCGG‑CCGGTGCGTGGGAGGGTTCGAATGAGGGGCTGAGCGCTACGGCATGTCATTATTCTTGTCTCCAATAATCCATGGCAACCGTGTTGCACACGGTCCATGAGGCTTATTGGA                                                                                                          <  1:311440/148‑1                                                                                                                                                      CCAATAATCCATGGCAACCGTGTTGCACACGGTCCATGAGGCTTATTGGAGACAAGAATAATGACACGCCGTAGCGCTCAGCCCCTCATTCGAACCCTCCCACGCACCGGCCGCAATGGCGAGGTGTGCCATGACTGACAGCGTTGAA        >  2:198958/1‑148                                                                                                                                                       CAATAATCCATGGCAACCGTGTTGCACACGGTCCATGAGGCTTATTGGAGACAAGAATAATGACATGCCGTAGCGCTGAGCCCCTCATTCGAACCCTCCCACGCACCGGCCGCAATGGCGAGGTGTGCCATGACTGACAGCGTTGAAA       >  1:294902/1‑148                                                                                                                                                       CAATAATCCATGGCAACCGTGTTGCACACGGTCCATGAGGCTTATTGGAGACAAGAATAATGACATGCCGTAGCGCTCAGCCCCTCATTCGAACCCTCCCACGCACCGGCCGCAATGGCGAGGTGTGCCATGACTGACAGCGTTGAAA       >  7:50060/1‑148                                                                                                                                                        AATAATCCATGGCAACCGTGTTGCACACGGTCCATGAGGCTTATTGGAGACAAGAATAATGACATGCCGTAGCGCTCAGCCCCTCATTCGAACCCTCCCACGCACCGGCCGCAATGGCGAGGTGTGCCATGACTGACAGCGTTGAAAA      >  1:234220/1‑148                                                                                                                                                         ATAATCCATGGCAACCGTGTTGCACACGGTCCATGAGGCTTATTGGAGACAAGAATAATGACATGCCGTAGCGCTCAGCCCCTCATTCGAACCCTCCCACGCACCGGCCGCAATGGCGAGGTGTGCCATGACTGACAGCGTTGAAAAAA    <  5:42496/149‑1                                                                                                                                                            ATCCATGGCAACCGTGTTGCACACGGTCCATGAGGCTTATTGGAGACAAGAATAATGACATGCCGTAGCGCTCAGCCCCTCATTCGAACCCTCCCACGCACCGGCCGCAATGGCGAGGTGTGCCATGACTGACAGCGTTGAAAAAATC  <  2:244172/148‑1                                                                                                                                                                                                                                                                                                                 ACAGCATGAAGATGTGCCGGCTTTTCAGGGCGCGGGTGAGCTGGATTTTTTCAACGCTGTCAGTCATGGCACACCTCGCCATTGCGG‑CCGGTGCGTGGGAGGGTTCGAATGAGGGGCTGAGCGCTACGGCATGTCATTATTCTTGTCTCCAATAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4253612‑4253766 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccaataaTCCATGGCAACCGTGTTGCACACGGTCCATGAGGCTTATTGGAGACAAGAATAATGACATGCCGTAGCGCTCAGCCCCTCATTCGAACCCTCCCACGCACCGGCCGCAATGGCGAGGTGTGCCATGACTGACAGCGTTGAAAAAATC  <  NC_002947/4253801‑4253655

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.