New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4253766	44 (0.850)	3 (0.060)	3/250	NT	6.4%	intergenic (‑88/+109)	rocE/PP_3728	amino acid permease RocE/two‑component system sensor histidine kinase/response regulator
	?	NC_002947	= 4253801	47 (0.960)					intergenic (‑123/+74)	rocE/PP_3728	amino acid permease RocE/two‑component system sensor histidine kinase/response regulator

TGAAGATGTGCCGGCTTTTCAGGGCGCGGGTGAGCTGGATTTTTTCAACGCTGTCAGTCATGGCACACCTCGCCATTGCGG‑CCGGTGCGTGGGAGGGTTCGAATGAGGGGCTGAGCGCTACGGCATGTCATTATTCTTGTCTCCAATAAGCCTCATGGACCGTGTGCAACACGGTTGCCATGGATTATTGGAAACGGATGTAAGGCGCCGTTATACGAACGGATCGAAGATGTAAAAAGTCGTAAGCTTTTTGTACGTCAGCTCTGAATCAGCTGTTCCAGCGTGGCACTGGCCTGA  >  NC_002947/4253618‑4253914                                                                                                                                                      |                                                                                                                                                     tGAAGATGTGCCGGCTTTTCAGGGCGCGGGTGAGCTGGATTTTTTCAACGCTGTCAGTCATGGCACACCTCGCCATTGCGG‑CCGGTGCGTGGGAGGGTTCGAATGAGGGGCTGAGCGCTACGGCATGTCATTATTCTTGTCTCCAATAA                                                                                                                                                      >  6:313176‑M1/1‑149 (MQ=255)     gATGTGCCGGCTTTTCAGGGCGCGGGTGAGCTGGATTTTTTCAACGCTGTCAGTCATGGCACACCTCGCCATTGCGG‑CCGGTGCGTGGGAGGGTTCGAATGAGGGGCTGAGCGCTACGGCATGTCATTATTCTTGTCTCCAATAAGCCt                                                                                                                                                  >  4:205176/1‑149 (MQ=255)        gtgCCGGCTTTTCAGGGCGCGGGTGAGCTGGATTTTTTCAACGCTGTCAGTCATGGCACACCTCGCCATTGCGG‑CCGGTGCGTGGGAGGGTTCGAATGAGGGGCTGAGCGCTACGGCGTGTCATTATTCTTGTCTCCAATAAGCCTCAt                                                                                                                                               >  1:198958/1‑149 (MQ=255)           ccGGCTTTTCAGGGCGCGGGTGAGCTGGATTTTTTCAACGCTGTCAGTCATGGCACACCTCGCCATTGCGG‑CCGGTGCGTGGGAGGGTTCGAATGAGGGGCTGAGCGCTACGGCATGTCATTATTCTTGTCTCCAATAAGCCTCATGGa                                                                                                                                            >  2:234220/1‑149 (MQ=255)             ggCTTTTCAGGGCGCGGGTGAGCTGGATTTTTTCAACGCTGTCAGTCATGGCACACCTCGCCATTGCGG‑CCGGTGCGTGGGAGGGTTCGAATGAGGGGCTGAGCGCTACGGCATGTCATTATTCTTGTCTCCAATAAGCCTCATGGAcc                                                                                                                                          <  2:22748/149‑1 (MQ=255)             ggCTTTTCAGGGCGCGGGTGAGCTGGATTTTTTCAACGCTGTCAGTCATGGCACACCTCGCCATTGCGG‑CCGGTGCGTGGGAGGGTTCGAATGAGGGGCTGAGCGCTACGGCATGTCATTATTCTTGTCTCCAATAAGCCTCATGGAcc                                                                                                                                          >  5:148302/1‑149 (MQ=255)                 tttCAGGGCGCGGGTGAGCTGGATTTTTTCAACGCTGTCAGTCATGGCACACCTCGCCATTGCGG‑CCGGTGCGTGGGAGGGTTCGAATGAGGGGCTGAGCGCTACGGCATGTCATTATTCTTGTCTCCAATAAGCCTCATGGACCgtgt                                                                                                                                      >  4:302705/1‑149 (MQ=255)                    cAGGGCGCGGGTGAGCTGGATTTTTTCAACGCTGTCAGTCATGGCACACCTCGCCATTGCGG‑CCGGTGCGTGGGAGGGTTCGAATGAGGGGCTGAGCGCTACGGCATGTCATTATTCTTGTCTCCAATAAGCCTCATGGACCGTGTGc                                                                                                                                    >  5:264940/1‑148 (MQ=255)                     aGGGCGCGGGTGAGCTGGATTTTTTCAACGCTGTCAGTCATGGCACACCTCGCCATTGCGG‑CCGGTGCGTGGGAGGGTTCGAATGAGGGGCTGAGCGCTACGGCATGTCATTATTCTTGTCTCCAATAAGCCTCATGGACCGTGTGCaa                                                                                                                                  >  6:42523/1‑149 (MQ=255)                     aGGGCGCGGGTGAGCTGGATTTTTTCAACGCTGTCAGTCATGGCACACCTCGCCATTGCGG‑CCGGTGCGTGGGAGGGTTCGAATGAGGGGCTGAGCGCTACGGCATGTCATTATTCTTGTCTCCAATAAGCCTCATGGACCGTGTGCaa                                                                                                                                  >  8:50060/1‑149 (MQ=255)                                 aGCTGGATTTTTTCAACGCTGTCAGTCATGGCACACCTCGCCATTGCGG‑CCGGTGCGTGGGAGGGTTCGAATGAGGGGCTGAGCGCTACGGCATGTCATTATTCTTGTCTCCAATAAGCCTCATGGACCGTGTGCAACACGGTTGCCAt                                                                                                                      <  5:309982/149‑1 (MQ=255)                                    tGGATTTTTTCAACGCTGTCAGTCATGGCACACCTCGCCATTGCGG‑CCGGTGCGTGGGAGGGTTCGAATGAGGGGCTGAGCGCTACGGCATGTCATTATTCTTGTCTCCAATAAGCCTCATGGACCGTGTGCAACACGGTTGCCATGGa                                                                                                                   >  1:224469/1‑149 (MQ=255)                                      gATTTTTTCAACGCTGTCAGTCATGGCACACCTCGCCATTGCGG‑CCGGTGCGTGGGAGGGTTCGAATGAGGGGCTGAGCGCTACGGCATGTCATTATTCTTGTCTCCAATAAGCCTCATGGACCGTGTGCAACACGGTTGCCATGGAt                                                                                                                  <  2:244172‑M2/148‑2 (MQ=255)                                        ttttttCAACGCTGTCAGTCATGGCACACCTCGCCATTGCGG‑CCGGTGCGTGGGAGGGTTCGAATGAGGGGCTGAGCGCTACGGCATGTCATTATTCTTGTCTCCAATAAGCCTCATGGACCGTGTGCAACACGGTTGCCATGGAttat                                                                                                               <  5:42496‑M2/149‑5 (MQ=255)                                          ttttCAACGCTGTCAGTCATGGCACACCTCGCCATTGCGG‑CCGGTGCGTGGGAGGGTTCGAATGAGGGGCTGAGCGCTACGGCATGTCATTATTCTTGTCTCCAATAAGCCTCATGGACCGTGTGCAACACGGTTGCCATGGAttatt                                                                                                              >  1:234220‑M2/1‑143 (MQ=255)                                           tttCAACGCTGTCAGTCATGGCACACCTCGCCATTGCGG‑CCGGTGCGTGGGAGGGTTCGAATGAGGGGCTGAGCGCTACGGCATGTCATTATTCTTGTCTCCAATAAGCCTCATGGACCGTGTGCAACACGGTTGCCATGGAttattg                                                                                                             >  7:50060‑M2/1‑142 (MQ=255)                                           tttCAACGCTGTCAGTCATGGCACACCTCGCCATTGCGG‑CCGGTGCGTGGGAGGGTTCGAATGAGGGGCTCAGCGCTACGGCATGTCATTATTCTTGTCTCCAATAAGCCTCATGGACCGTGTGCAACACGGTTGCCATGGAttattg                                                                                                             >  1:294902‑M2/1‑142 (MQ=255)                                            ttCAACGCTGTCATTGATTGCACACCTCGCCATTGCGGCCCCCCATGTGGGAGGGTTCGAATGAGGGGCTGAGCGCTACGGCATGTCATTATTCTTGTCTCCAATAAtccatggcaaccgtgttgcacacggtccatgaggcttattg                                                                                                             <  1:272358‑M1/148‑42 (MQ=255)                                            ttCAACGCTGTCAGTCATGGCACACCTCGCCATTGCGG‑CCGGTGCGTGGGAGGGTTCGAATGAGGGGCTGAGCGCTACGGCGTGTCATTATTCTTGTCTCCAATAAGCCTCATGGACCGTGTGCAACACGGTTGCCATGGAttattgg                                                                                                            >  2:198958‑M2/1‑141 (MQ=255)                                            ttCAACGCTGTCAGTCATGGCACACCTCGCCATTGCGG‑CCGGTGCGTGGGAGGGTTCGAATGAGGGGCTGAGCGCTACGGCATGTCATTATTCTTGTCTCCAATAAtccatggcaaccgtgttgcacacggtccatgaggcttattgg                                                                                                            <  5:313176‑M1/148‑43 (MQ=255)                                             tCAACGCTGTCAGTCATGGCACACCTCGCCATTGCGG‑CCGGTGCGTGGGAGGGTTCGAATGAGGGGCTGAGCGCTACGGCATGTCATTATTCTTGTCTCCAATAAtccatggcaaccgtgttgcacacggtccatgaggcttattgga                                                                                                           <  1:311440‑M1/148‑44 (MQ=255)                                             tCAACGCTGTCAGTCATGGCACACCTCGCCATTGCGG‑CCGGTGCGTGGGAGGGTTCGAATGAGGGGCTGAGCGCTACGGCATGTCATTATTCTTGTCTCCAATAAGCCTCATGGACCgt                                                                                                                                        <  8:282967/119‑1 (MQ=255)                                             tCAACGCTGTCAGTCATGGCACACCTCGCCATTGCGG‑CCGGTGCGTGGGAGGGTTCGAATGAGGGGCTGAGCGCTACGGCATGTCATTATTCTTGTCTCCAATAAGCCTCATGGACCgt                                                                                                                                        >  7:282967/1‑119 (MQ=255)                                                 cGCTGTCAGTCATGGCACACCTCGCCATTGCGG‑CCGGTGCGTGGGAGGGTTCGAATGAGGGGCTGAGCGCTACGGCATGTCATTATTCTTGTCTCCAATAAGCCTCATGGACCGTGTGCAACACGGTTGCCATGGATTATTGGAAACgg                                                                                                      <  4:306582/149‑1 (MQ=255)                                                   cTGTCAGTCATGGCACACCTCGCCATTGCGG‑CCGGTGCGTGGGAGGGTTCGAATGAGGGGCTGAGCGCTACGGCATGTCATTATTCTTGTCTCCAATAAGCCTCATGGACCGTGTGCAACACGGTTGCCATGGATTATTGGAAACGGAt                                                                                                    <  6:42496/149‑1 (MQ=255)                                                          tcaTGGCACACCTCGCCATTGCGG‑CCGGTGCGTGGGAGGGTTCGAATGAGGGGCTGAGCGCTACGGCATGTCATTATTCTTGTCTCCAATAAGCCTCAGGGACCGTGTGCAACACGGTTGCCATGGATTATTGGAAACGGATGTAAGgc                                                                                             >  7:174586/1‑149 (MQ=255)                                                            aTGGCACACCTCGCCATTGCGG‑CCGGTGCGTGGGAGGGTTCGAATGAGGGGCTGAGCGCTACGGCATGTCATTATTCTTGTCTCCAATAAGCCTCATGGACCGTGTGCAACACGGTTGCCATGGATTATTGGAAACGGATGTAAGgcgc                                                                                           >  7:78607/1‑149 (MQ=255)                                                                 acacCTCGCCATTGCGG‑CCGGTGCGTGGGAGGGTTCGAATGAGCGGCTGAGCGCTACGGCATGTCATTATTCTTGTCTCCAATAAGCCTCATGGACCGTGTGCAACACGGTTGCCATGGATTATTGGAAACGGATGTAAGGCGCCGTta                                                                                      <  1:51030/149‑1 (MQ=255)                                                                  cacCTCGCCATTGCGG‑CCGGTGCGTGGGAGGGTTCGAATGAGGGGCTGAGCGCTACGGCATGTCATTATTCTTGTCTCCAATAAGCCTCATGGACCGTGTGCAACACGGTTGCCATGGATTATTGGAAACGGATGTAAGGCGCCGTtat                                                                                     <  6:264940/149‑1 (MQ=255)                                                                   acCTCGCCATTGCGG‑CCGGTGCGTGGGAGGGTTCGAATGAGGGGCTGAGCGCTACGGCATGTCATTATTCTTGTCTCCAATAAGCCTCATGGACCGTGTGCAACACGGTTGCCATGGATTATTGGAAACGGATGTAAGGCGCCGTtata                                                                                    <  5:42523/149‑1 (MQ=255)                                                                   acCTCGCCATTGCGG‑CCGGTGCGTGGGAGGGTTCGAATGAGGGGCTGAGCGCTACGGCATGTCATTATTCTTGTCTCCAATAAGCCTCATGGACCGTGTGCAACACGGTTGCCATGGATTATTGGAAACGGATGTAAGGCGCCGTtata                                                                                    >  6:69802/1‑149 (MQ=255)                                                                    ccTCGCCATTGCGG‑CCGGTGCGTGGGAGGGTTCGAATGAGGGGCTGAGCGCTACGGCATGTCATTATTCTTGTCTCCAATAAGCCTCATGGACCGTGTGCAACACGGTTGCCATGGATTATTGGAAACGGATGTAAGGCGCCGTTATAc                                                                                   <  6:154135/149‑1 (MQ=255)                                                                                gg‑CCGGTTCTTGGGAGGGTTCGAATGAGGGGCTGAGCGCTACGGCATGTCATTATTCTTGTCTCCAATAAGCCTCATGGACCGTGTGCAACACGGTTGCCATGGATTATTGGAAACGGATGTAAGGCGCCGTTATACGAACGGATCGaa                                                                       <  1:5300/149‑1 (MQ=255)                                                                                gg‑CCGGTGCGTGGGAGGGTTCGAATGAGGGGCTGAGCGCTACGGCATGTCATTATTCTTGTCTCCAATAAGCCTCATGGACCGTGTGCAACACGGTTGCCATGGATTATTGGAAACGGATGTAAGGCGCCGTTATACGAACGGATCGaa                                                                       <  8:140366/149‑1 (MQ=255)                                                                                    cGGTGCGTGGGAGGGTTCGAATGAGGGGCTGAGCGCTACGGCATGTCATTATTCTTGTCTCCAATAAGCCTCATGGACCGTGTGCAACACGGTTGCCATGGATTATTGGAAACGGATGTAAGGCGCCGTTATACGAACGGATCGAAGAt                                                                    <  4:120962/149‑1 (MQ=255)                                                                                     ggTGCGTGGGAGGGTTCGAATGAGGGGCTGAGCGCTACTGCATGTCATTATTCTTGTCTCCAATAAGCCTCATGGACCGTGTGCAACACGGTTGCCATGGATTATTGGAAACGGATGTAAGGCGCCGTTATACGAACGGATCGAAGATg                                                                   <  1:244172/149‑1 (MQ=255)                                                                                          gTGGGAGGGTTCGAATGAGGGGCTGAGCGCTACGGCATGTCATTATTCTTGTCTCCAATAAGCCTCATGGACCGTGTGCAACACGGTTGCCATGGATTATTGGAAACGGATGTAAGGCGCCGTTATACGAACGGATCGAAGATGTaaa                                                               >  6:118934/1‑148 (MQ=255)                                                                                             ggAGGGTTCGAATGAGGGGCTGAGCGCTACGGCATGTCATTATTCTTGTCTCCAATAAGCCTCATGGACCGTGTGCAACACGGTTGCCATGGATTATTGGAAACGGATGTAAGGCGCCGTTATACGAACGGATCGAAGATGTAAAAAGt                                                           >  1:31047/1‑149 (MQ=255)                                                                                                  gTTCGAATGAGGGGCTGAGCGCTACGGCATGTCATTATTCTTGTCTCCAATAAGCCTCATGGACCGTGTGCAACACGGTTGCCATGGATTATTGGAAACGGATGTAAGGCGCCGTTATACGAACGGATCGAAGATGTAAAAAGTCGTaa                                                      <  1:143712/149‑1 (MQ=255)                                                                                                         tGAGGGGCTGAGCGCTACGGCATGTCATTATTCTTGTCTCCAATAAGCCTCATGGACCGTGTGCAACACGGTTGCCATGGATTATTGGAAACGGATGTAAGGCGCCGTTATACGAACGGATCGAAGATGTAAAAAGTCGTAAGCttttt                                               <  5:14977/149‑1 (MQ=255)                                                                                                            ggggCTGAGCGCTACGGCATGTCATTATTCTTGTCTCCAATAAGCCTCATGGACCGTGTGCAACACGGTTGCCATGGATTATTGGAAACGGATGTAAGGCGCCGTTATACGAACGGATCGAAGATGTAAAAAGTCGTAAGCTTTTTGTa                                            >  5:18425/1‑149 (MQ=255)                                                                                                                cTGAGCGCTACGGCATGTCATTATTCTTGTCTCCAATAAGCCTCATGGACCGTGTGCAACACGGTTGCCATGGATTATTGGAAACGGATGTAAGGCGCCGTTATACGAACGGATCGAAGATGTAAAAAGTCGTAAGCTTTTTGTACGTc                                        <  3:302705/149‑1 (MQ=255)                                                                                                                      gcTCCGGCATGTCATTATTCTTGTCTCCAATAAGCCTCATGGACCGTGTGCAACACGGTTGCCATGGATTATTGGAAACGGATGTAAGGCGCCGTTATACGAACGGATCGAAGATGTAAAAAGTCGTAAGCTTTTTGTACGTCAGctct                                  <  4:57881/149‑1 (MQ=255)                                                                                                                      gcTACGGCATGTCATTATTCTTGTCTCCAATAAGCCTCATGGACCGTGTGCAACACGGTTGCCATGGATTATTGGAAACGGATGTAAGGCGCCGTTATACGAACGGATCGAAGATGTAAAAAGTCGTAAGCTTTTTGTACGTCAGctct                                  <  5:118934/149‑1 (MQ=255)                                                                                                                          cGGCATGTCATTATTCTTGTCTCCAATAAGCCTCATGGACCGTGTGCAACACGGTTGCCATGGATTATTGGAAACGGATGTAAGGCGCCGTTATACGAACGGATCGAAGATGTAAAAAGTCGTAAGCTTTTTGTACGTCAGCTCTGa                                <  6:18425/147‑1 (MQ=255)                                                                                                                          cGGCATGTCATTATTCTTGTCTCCAATAAGCCTCATGGACCGTGTGCAACACGGTTGCCATGGATTATTGGAAACGGATGTAAGGCGCCGTTATACGAACGGATCGAAGATGTAAAAAGTCGTAAGCTTTTTGTACGTCAGCTCTGa                                <  6:148302/147‑1 (MQ=255)                                                                                                                          cGGCATGTCATTATTCTTGTCTCCAATAAGCCTCATGGACCGTGTGCAACACGGTTGCCATGGATTATTGGAAACGGATGTAAGGCGCCGTTATACGAACGGATCGAAGATGTAAAAAGTCGTAAGCTTTTTGTACGTCAGCTCTGa                                <  2:31047/147‑1 (MQ=255)                                                                                                                            gCATGTCATTATTCTTGTCTCCAATAAGCCTCATGGACCGTGTGCAACACGGTTGCCATGGATTATTGGAAACGGATGTAAGGCGCCGTTATACGAACGGATCGAAGATGTAAAAAGTCGTAAGCTTTTTGTACGTCAGCTCTGAAt                              >  1:194057/1‑147 (MQ=255)                                                                                                                              aTGTCATTATTCTTGTCTCCAATAAGCCTCATGGACCGTGTGCAACACGGTTGCCATGGATTATTGGAAACGGATGTAAGGCGCCGTTATACGAACGGATCGAAGATGTAAAAAGTCGTAAGCTTTTTGTACGTCAGCTCTGAATCAGc                          >  2:267035/1‑149 (MQ=255)                                                                                                                                          ttGTCTCCAATAAGCCTCATGGACCGTGTGCAACACGGTTGCCATGGATTATTGGAAACGGATGTAAGGCGCCGTTATACGAACGGATCGAAGATGTAAAAAGTCGTAAGCTTTTTGTACGTCa                                       <  2:14455/124‑1 (MQ=255)                                                                                                                                          ttGTCTCCAATAAGCCTCATGGACCGTGTGCAACACGGTTGCCATGGATTATTGGAAACGGATGTAAGGCGCCGTTATACGAACGGATCGAAGATGTAAAAAGTCGTAAGCTTTTTGTACGTCa                                       >  1:14455/1‑124 (MQ=255)                                                                                                                                              atacAATAAGGCTGATGGACCGTGTGCAACACGGTTTCCATTGATTATTGGAAACGGATGTAAGGCGCCGTTATACGAACGGATCGATGATGTAATAAGTCGTAAGCTTTTTGTACGTCAGCTCTGAATCAGCTGTTCCAGCGTGGCa           <  3:205176/145‑1 (MQ=255)                                                                                                                                               tcCAATAAGCCTCATGGACCGTGTGCAACACGGTTGCCATGGAttattggagacaagaataatgacatgccgtagcgctcagcccctcattcgaaccctcccacgcaccggccgcaatggcgaggtgtgccatgactgacagcgttga          <  1:311440‑M2/148‑106 (MQ=255)                                                                                                                                               tcCAATAAGCCTCATGGACCGTGTGCAACACGGTTGCCATGGATTATTGGAAACGGATGTAAGGCGCCGTTATACGAACGGATCGAAGATGTAAAAAGTCGTAAGCTTTTTGTACGTCa                                       >  2:121866/1‑119 (MQ=255)                                                                                                                                               tcCAATAAGCCTCATGGACCGTGTGCAACACGGTTGCCATGGATTATTGGAAACGGATGTAAGGCGCCGTTATACGAACGGATCGAAGATGTAAAAAGTCGTAAGCTTTTTGTACGTCa                                       <  1:121866/119‑1 (MQ=255)                                                                                                                                               tcCAATAAGCCTCATGGACCGTGTGCAACACGGTTGCCATGGATTATTGGAAACGGATGTAAGGCGCCGTTATACGAACGGATCGAAGATGTAAAAAGTCGTAAGCTTTTTGTACGTCAGCTCTGAATCAGCTGTTCCAGCGTGGCACt         >  1:131862/1‑149 (MQ=255)                                                                                                                                                ccAATAAtccatggcaaccgtgttgcacacggtccatgaggcttattggagacaagaataatgacacgccgtagcgctcagcccctcattcgaaccctcccacgcaccggccgcaatggcgaggtgtgccatgactgacagcgttgaa         >  2:198958‑M1/1‑7 (MQ=255)                                                                                                                                                ccAATAAGCCTCATGGACCGTGTGCAACACGGTTGCCATGGAttattggagacaagaataatgacatgccgtagcgctcagcccctcattcgaaccctcccacgcaccggccgcaatggcgaggtgtgccatgactgacagcgttgaa         <  5:313176‑M2/148‑107 (MQ=255)                                                                                                                                                 cAATAAtccatggcaaccgtgttgcacacggtccatgaggcttattggagacaagaataatgacatgccgtagcgctgagcccctcattcgaaccctcccacgcaccggccgcaatggcgaggtgtgccatgactgacagcgttgaaa        >  1:294902‑M1/1‑6 (MQ=255)                                                                                                                                                 cAATAAtccatggcaaccgtgttgcacacggtccatgaggcttattggagacaagaataatgacatgccgtagcgctcagcccctcattcgaaccctcccacgcaccggccgcaatggcgaggtgtgccatgactgacagcgttgaaa        >  7:50060‑M1/1‑6 (MQ=255)                                                                                                                                                 cAATAAGCCTCATGGACCGTGTGCAACACGGTTGCCATGGAttattggagacaagaataatgacatgccgtagcgctcagcccctcattcgaaccctcccacatggggggccgcaatggcgaggtgtgcaatcaatgacagcgttgaa        <  1:272358‑M2/148‑108 (MQ=255)                                                                                                                                                  aataatccatggcaaccgtgttgcacacggtccatgaggcttattggagacaagaataatgacatgccgtagcgctcagcccctcattcgaaccctcccacgcaccggccgcaatggcgaggtgtgccatgactgacagcgttgaaaa       >  1:234220‑M1/1‑5 (MQ=255)                                                                                                                                                   ataatccatggcaaccgtgttgcacacggtccatgaggcttattggagacaagaataatgacatgccgtagcgctcagcccctcattcgaaccctcccacgcaccggccgcaatggcgaggtgtgccatgactgacagcgttgaaaaaa     <  5:42496‑M1/149‑146 (MQ=255)                                                                                                                                                      atccatggcaaccgtgttgcacacggtccatgaggcttattggagacaagaataatgacatgccgtagcgctcagcccctcattcgaaccctcccacgcaccggccgcaatggcgaggtgtgccatgactgacagcgttgaaaaaatc   <  2:244172‑M1/148‑148 (MQ=255)                                                                                                                                                      aGCCTCATGGACCGTGTGCAACACGGTTGCCATGGATTATTGGAAACGGATGTAAGGCGCCGTTATACGAACTGATCGAAGATGTAAAAAGTCGTAAGCTTTTTGTACGTCAGCTCTGAATCAGCTGTTCCAGCGTGGCACTGGCCTGa  <  8:78607/149‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                     TGAAGATGTGCCGGCTTTTCAGGGCGCGGGTGAGCTGGATTTTTTCAACGCTGTCAGTCATGGCACACCTCGCCATTGCGG‑CCGGTGCGTGGGAGGGTTCGAATGAGGGGCTGAGCGCTACGGCATGTCATTATTCTTGTCTCCAATAAGCCTCATGGACCGTGTGCAACACGGTTGCCATGGATTATTGGAAACGGATGTAAGGCGCCGTTATACGAACGGATCGAAGATGTAAAAAGTCGTAAGCTTTTTGTACGTCAGCTCTGAATCAGCTGTTCCAGCGTGGCACTGGCCTGA  >  NC_002947/4253618‑4253914

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.