| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4337139 | 52 (1.000) | 4 (0.080) | 4/252 | NT | 7.5% | coding (76/885 nt) | PP_3811 | LysR family transcriptional regulator |
| ? | NC_002947 | = 4337178 | 50 (1.010) | coding (37/885 nt) | PP_3811 | LysR family transcriptional regulator | |||||
CACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4336987‑4337139‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcccagGTGATGGAGGCAGGTAGTTTCACCGCTGCCGCCGACCGTCTGGGCATGTCCAAGCAATCGGTCAGTCGGCGCCTGATGCAGCTTGAGGAGCGCCTGGGCGTGCGCCTGCTCAACCGCTCCACCCGGCGCCTCGATGCCACGCCACTGG < NC_002947/4337178‑4337031 CACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGC > 5:46791/1‑149 TTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCC > 4:214/1‑147 CCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGGTGATGGAGGCAGGTAGTTTCACCGCTGCCGCCGACCGTCTGGGCAT > 5:165455/1‑134 CCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGGTGATGGAGGCAGGTAGTTTCACCGCTGCCGCCGACCGTCTGGGCAT < 6:165455/134‑1 GGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCA > 7:62688/1‑84 GGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCA < 8:62688/84‑1 GAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGGTGATGGAGGCAGGTAGTTTCACCGCTGCCGCCGACCGTCTGGGCATGTCC > 5:109014/1‑123 GAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGGTGATGGAGGCAGGTAGTTTCACCGCTGCCGCCGACCGTCTGGGCATGTCC < 6:109014/123‑1 CCCAGGTGATGGAGGCAGGTAGTTTCACCGCTGCCGCCGACCGTCTGGGCATGTCCAAGCAATCGGTCAGTCGGCGCCTGATGCAGCTTGAGGAGCGCCTGGGCGTGCGCCTGCTCAACCGCTCCCCCCGGCGCCTCGATGCCACGCCA > 8:117348/1‑149 CCCAGGTGATGGAGGCAGGTAGTTTCACCGCTGCCGCCGACCGTCTGGGCATGTCCAAGCAATCGGTCAGTCGGCGCCTGATGCAGCTTGAGGAGCGCCTGGGCGTGCGCCTGCTCAACCGCTCCACCCGGCGCCTCGATGCCACGCCA > 1:42176/1‑149 CAGGTGATGGAGGCAGGTAGTTTCACCGCTGCCGCCGACCGTCTGGGCATGTCCAAGCAATCGGTCAGTCGGCGCCTGATGCAGCTTGAGGAGCGCCTGGGCGTGCGCCTGCTCAACCGCTCCACCCGGCGCCTCGATGCCACGCCACT > 6:46791/1‑149 GGTGCTGGAGGCAGGGAGGTTCACCGCTGCCGCCGACCGTCTGGGCATGTCCAACCAATCGGTCAGTCGGCGCCTGATGCAGCTTGCGGAGCGCCTGGGCGTGCGCCTGCTCAACCGCTCCACCCGGCGCCTCGATGCCACGCCACTGG < 2:62623/149‑1 CACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4336987‑4337139‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcccagGTGATGGAGGCAGGTAGTTTCACCGCTGCCGCCGACCGTCTGGGCATGTCCAAGCAATCGGTCAGTCGGCGCCTGATGCAGCTTGAGGAGCGCCTGGGCGTGCGCCTGCTCAACCGCTCCACCCGGCGCCTCGATGCCACGCCACTGG < NC_002947/4337178‑4337031 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |