New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 460174245 (0.860)5 (0.100) 5/254 NT 10.8% coding (150/633 nt) PP_4073 hypothetical protein
?NC_002947 = 4601772 40 (0.800)coding (120/633 nt) PP_4073 hypothetical protein

AAGCAATCGCAGGTGCAGAGATCAGGAGCCCGCCTTCTTCAGAGCGGAGGCGAAACCTCAAGTCCTCGGGCGCCCGCCCCGTCTCATGGATCAATACGCGACGCACCGTGGGTGCCTCCAGCTCCTGCGCTGACCACTGTCGCTGCGGCGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4601591‑4601742
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgtgTTTCGATCAGGCGGCGGGTACGCCGGGATTCACGCCGCAGCGACAGTGGTCAGCGCAGGAGCTGGAGGCACCCACGGTGCGTCGCGTATTGATCCATGAGACGGGGCGGGCGCCCGAGGACTTGAGGTTTCGCCTCCGCTCTGA  <  NC_002947/4601772‑4601629
                                                                                                                                                                                                                                                                                                        
AAGCAATCGCAGGTGCAGAGATCAGGAGCCCGCCTTCTTCAGAGCGGAGGCGAAACCTCAAGTCCTCGGGCGCCCGCCCCGTCTCATGGATCAATACGCGACGCACCGTGGGTGCCTCCAGCTCCTGCGCTGACCACTGTCGCTGCG                                                                                                                                                       <  3:254912/147‑1
    AATCGCAGGTGCAGAGATCAGGAGCCCGCCTTCTTCAGAGCGGAGGCGAAACCTCAAGTCCTCGGGCGCCCGCCCCGTCTCATGGATCAATACGCGACGCACCGTGGGTGCCTCCAGCTCCTGCGCTGACCACTGTCGCTGCGGCGTG                                                                                                                                                  >  5:167763/1‑148
                                       CAGAGCGGAGGCGAAACCTCAAGTCCTCGGGCGCCCGCCCCGTCTCATGGATCAATACGCGACGCACCGTGGGTGCCTCCAGCTCCTGCGCTGACCACTGTCGCTGCGGCGTGTTTCGATCAGGCGGCGGGTACGCCGGGATTCACGCC                                                                                                              >  8:220200/1‑149
                                       CAGAGCGGAGGCGAAACCTCAAGTCCTCGGGCGCCCGCCCCGTCTCATGGATCAATACGCGACGCACCGTGGGTGCCTCCAGCTCCTGCGCTGACCACTGTCGCTGCGGCGTGTTTCGATCAGGCGGCGGGTACGCCGGGATTCACG                                                                                                                <  4:144742/147‑1
                                          AGCGGAGGCGAAACCTCAAGTCCTCGGGCGCCCGCCCCGTCTCATGGATCAATACGCGACGCACCGTGGGTGCCTCCAGCTCCTGCGCTGACCACTGTCGCTGCGGCGTGTTTCGATCAGGCGGCGGGTACGCCGGGATTCACGCCGCA                                                                                                           <  7:220200/149‑1
                                                                                                 GCGACGCACCGTGGGTGCCTCCAGCTCCTGCGCTGACCACTGTCGCTGCGGCGTGTTTCGATCAGGCGGCGGGTACGCCGGGATTCACGCCGCAG                                                                                                          <  7:102026/95‑1
                                                                                                 GCGACGCACCGTGGGTGCCTCCAGCTCCTGCGCTGACCACTGTCGCTGCGGCGTGTTTCGATCAGGCGGCGGGTACGCCGGGATTCACGCCGCAG                                                                                                          >  8:102026/1‑95
                                                                                                                                                   GCGTGTTTCGATCAGGCGGCGGGTACGCCGGGATTCACGCCGCAGCGACAGTGGTCAGCGCAGGAGCTGGAGGCACCCACGGTGCGTCGCGTATTGATCCATGAGACGGGGCGGGCGCCCGAGGACTTGAGGTTTCGCCTCCGCTCTGA  <  8:102743/149‑1
                                                                                                                                                   GCGTGTTTCGATCAGGCGGAGGGTACGCCGGGATTCACGCCGCAGCGACAGTGGTCAGCGCAGGAGCTGGAGGCACCCACGGTGCGTCGCGTATTGATCCATGAGACGGGGCGGGCGCCCGAGGACTTGAGGTTTCGCCTCCGCTCTG   >  5:264711/1‑148
                                                                                                                                                    CGTGTTTCGATCAGGCGGCGGGTACGCCGGGATTCACGCCGCAGCGACAGTGGTCAGCGCAGGAGCTGGAGGCACCCACGGTGCGTCGCGTATTGATCCATGAGACGGGGCGGGCGCCCGA                             >  3:277196/1‑121
                                                                                                                                                    CGTGTTTCGATCAGGCGGCGGGTACGCCGGGATTCACGCCGCAGCGACAGTGGTCAGCGCAGGAGCTGGAGGCACCCACGGTGCGTCGCGTATTGATCCATGAGACGGGGCGGGCGCCCGA                             <  4:277196/121‑1
                                                                                                                                                                                                                                                                                                        
AAGCAATCGCAGGTGCAGAGATCAGGAGCCCGCCTTCTTCAGAGCGGAGGCGAAACCTCAAGTCCTCGGGCGCCCGCCCCGTCTCATGGATCAATACGCGACGCACCGTGGGTGCCTCCAGCTCCTGCGCTGACCACTGTCGCTGCGGCGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4601591‑4601742
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgtgTTTCGATCAGGCGGCGGGTACGCCGGGATTCACGCCGCAGCGACAGTGGTCAGCGCAGGAGCTGGAGGCACCCACGGTGCGTCGCGTATTGATCCATGAGACGGGGCGGGCGCCCGAGGACTTGAGGTTTCGCCTCCGCTCTGA  <  NC_002947/4601772‑4601629

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.