New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4601742	45 (0.860)	5 (0.100)	5/254	NT	10.8%	coding (150/633 nt)	PP_4073	hypothetical protein
	?	NC_002947	= 4601772	40 (0.800)					coding (120/633 nt)	PP_4073	hypothetical protein

CTTCTTCAGAGCGGAGGCGAAACCTCAAGTCCTCGGGCGCCCGCCCCGTCTCATGGATCAATACGCGACGCACCGTGGGTGCCTCCAGCTCCTGCGCTGACCACTGTCGCTGCGGCGTGAATCCCGGCGTACCCGCCGCCTGATCGAAACACGCCAGGCGCTCGATATTGGACACGATCCGTGGGCAGTCCGGCGATGCACGGGTCAAGGCAGGCATTAACAAGAAAAGTAATGAAAGTCCCACGCCACCTGTATAACGAATAATCATCTCACCTTAACTCTCCCACTCAATCGTA  >  NC_002947/4601624‑4601919                                                                                                                                                     |                                                                                                                                                    gatcttcAGAGCGGAGGCGAAACCTCAAGTCCTCGGGCGCCCGCCCCGTCTCATGGATCAATACGCGACGCACCGTGGGTGCCTCCAGCTCCTGCGCTGACCACTGTCGCTGCGGCGTGAATCCCGGCGTACCCGCCGCCTGATCGaaa                                                                                                                                                     <  1:194713/147‑1 (MQ=255)      tcAGAGCGGAGGCGAAACCTCAAGTCCTCGGGCGCCCGCCCCGTCTCATGGATCAATACGCGACGCACCGTGGGTGCCTCCAGCTCCTGCGCTGACCACTGTCGCTGCGGCGTGAATCCCGGCGTACCCGCCGCCTGATCGAAAcacgc                                                                                                                                                <  8:102743‑M2/149‑6 (MQ=255)       cAGAGCGGAGGCGAAACCTCAAGTCCTCGGGCGCCCGCCCCGTCTCATGGATCAATACGCGACGCACCGTGGGTGCCTCCAGCTCCTGCGCTGACCACTGTCGCTGCGGCGTGAATCCCGGCGTACCCTCCGCCTGATCGAAAcacgc                                                                                                                                                >  5:264711‑M2/1‑143 (MQ=255)       cAGAGCGGAGGCGAAACCTCAAGTCCTCGGGCGCCCGCCCCGTCTCATGGATCAATACGCGACGCACCGTGGGTGCCTCCAGCTCCTGCGCTGACCACTGTCGCTGCGGCGTGAATCCCGGCGTACCCGCCGCCTGATCGaaa                                                                                                                                                     >  2:194713/1‑143 (MQ=255)          agCGGAGGCGAAACCTCAAGTCCTCGGGCGCCCGCCCCGTCTCATGGATCAATACGCGACGCACCGTGGGTGCCTCCAGCTCCTGCGCTGACCACTCTCGCTGCGGCGTGAATCCCGGCGTACCCGCCGCCTGATCGAAACACGCCAgg                                                                                                                                            >  5:58626/1‑149 (MQ=255)           gCGGAGGCGAAACCTCAAGTCCTCGGGCGCCCGCCCCGTCTCATGGATCAATACGCGACGCACCGTGGGTGCCTCCAGCTCCTGCGCTGACCACTGTCGCTGCGGCGTGAATCCCGGCGTACCCGCCGCCTGATCGAAACACGCCAGgc                                                                                                                                           <  4:25692/149‑1 (MQ=255)             ggAGGCGAAACCTCAAGTCCTCGGGCGCCCGCCCCGTCTCATGGATCAATACGCGACGCACCGTGGGTGCCTCCAGCTCCTGCGCTGACCACTGTCGCTGCGGCGTGAATCCCGGCGTACCCGCCGCCTGATCGAAACACGCCAGgcgc                                                                                                                                         >  3:105075/1‑149 (MQ=255)                      aCCTCAAGTCCTCGGGCGCCCGCCCCGTCTCATGGATCAATACGCGACGCACCGTGGGTGCCTCCAGCTCCTGCGCTGACCACTGTCGCTGCGGCGTGAATCCCGGCGTACCCGCCGCCTGATCGAAACACGCCAGGCGCTCGATATTg                                                                                                                                <  8:84053/149‑1 (MQ=255)                        cTCAAGTCCTCGGGCGCCCGCCCCGTCTCATGGATCAATACGCGACGCACCGTGGGTGCCTCCAGCTCCTGCGCTGACCACTGTCGCTGCGGCGTGAATCCCGGCGTACCCGCCGCCTGATCGAAACACGCCAGGCGCTCGATATTGGa                                                                                                                              >  4:193280/1‑149 (MQ=255)                         tCAAGTCCTCGGGCGCCCGCCCCGTCTCATGGATCAATACGCGACGCACCGTGGGTGCCTCCAGCTCCTGCGCTGACCACTGTCGCTGCGGCGTGAATCCCGGCGTACCCGCCGCCTGATCGAAACACGCCAGGCGCTCGATATTGGa                                                                                                                              >  8:101133/1‑148 (MQ=255)                           aaGTCCTCGGGCGCCCGCCCCGTCTCATGGATCAATACGCGACGCACCGTGGGTGCCTCCAGCTCCTGCGCTGACCACTGTCGCTGCGGCGTGAATCCCGGCGTACCCGCCGCCTGATCGAAACACGCCAGGCGCTCGATATTGGac                                                                                                                             <  8:146206/147‑1 (MQ=255)                                 tCGGGCGCCCGCCCCGTCTCATGGATCAATACGCGACGCACCGTGGGTGCCTCCAGCTCCTGCGCTGACCACTGTCGCTGCGGCGTGAATCCCGGCGTACCCGCCGCCTGATCGAAAcacg                                                                                                                                                 <  4:277196‑M2/121‑5 (MQ=255)                                 tCGGGCGCCCGCCCCGTCTCATGGATCAATACGCGACGCACCGTGGGTGCCTCCAGCTCCTGCGCTGACCACTGTCGCTGCGGCGTGAATCCCGGCGTACCCGCCGCCTGATCGAAAcacg                                                                                                                                                 >  3:277196‑M2/1‑117 (MQ=255)                                   gggCGCCCGCCCCGTCTCATGGATCAATACGCGACGCACCGTGGGTGCCTCCAGCTCCTGCGCTGACCACTGTCGCTGCGGCGTGAATCCCGGCGTACCCGCCGCCTGATCGAAACACGCCAGGCGCTCGATATTGGACACGATCCGTg                                                                                                                   <  1:140072/149‑1 (MQ=255)                                        cccgcccCGTCTCATGGATCAATACGCGACGCACCGTGGGTGCCTCCAGCTCCTGCGCTGACCACTGTCGCTGCGGCGTGAATCCCGGCGTACCCGCCGCCTGATCGAAACACGCCAGGCGCtt                                                                                                                                       >  6:151958/1‑123 (MQ=255)                                        cccgcccCGTCTCATGGATCAATACGCGACGCACCGTGGGTGCCTCCAGCTCCTGCGCTGACCACTGTCGCTGCGGCGTGAATCCCGGCGTACCCGCCGCCTGATCGAAACACGCCAGGCGCtt                                                                                                                                       <  5:151958/124‑2 (MQ=255)                                            ccccGTCTCATGGATCAATACGCGACGCACCGTGGGTGCCTCCAGCTCCTGCGCTGACCACTGTCGCTGCGGCGTGAATCCCGGCGTACCCGCCGCCTGATCGAAACACGCCAGGCGCTCGATATTGGACACGATCCGTGGGCAGTCCg                                                                                                          >  7:42342/1‑149 (MQ=255)                                                     aTGGATCAATACGCGACGCACCGTGGGTGCCTCCAGCTCCTGCGCTGACCACTGTCGCTGCGGCGTGAATCCCGGCGTACCCGCCGCCTGATCGAAACACGCCAGGCGCTCGATATTGGACACGATCCGTGGGCAGTCCGGCGATGCa                                                                                                  <  6:178195/148‑1 (MQ=255)                                                     aTGGATCAATACGCGACGCACCGTGGGTGCCTCCAGCTCCTGCGCTGACCACTGTCGCTGCGGCGTGAATCCCGGCGTACCCGCCGCCTGATCGAAACACGCCAGGCGCTCGATATTGGACACGATCCGTGGGCAGTCCGGCGATGCAc                                                                                                 >  7:139924/1‑149 (MQ=255)                                                             aTACGCGACGCACCGTGGGTGCCTCCAGCTCCTGCGCTGACCACTGTCGCTGCGGCGTGAATCCCGGCGTACCCGCCGCCTGATCGAAACACGCCAGGCGCTCGATATTGGACACGATCCGTGGGCAGTCCGGCGATGCACGGGTCAag                                                                                         >  6:6135/1‑149 (MQ=255)                                                                 gcgACGCCGCGTGGGTGCCTCCAGCTCCTGCGCTGAGCAGTGTCGCTGCGGCGTGAATCCCGGCGTACCCGCCGCCTGATCGAAACACGCCAGGCGCGCGATATTGGGCACGAGCCGTGGGCAGTCCGGCGCTGCCCGGGTCAgggcag                                                                                     >  8:166572/1‑149 (MQ=255)                                                                 gcgACGCACCGTGGGTGCCTCCAGCTCCTGCGCTGACCAATGTCGCTGCGGCGTGAATCCCGGCGTACCCGCCGCCTGATCGAAACACGCCAGGCGCTCGATATTGGACACGATCCGTGGGCAGTCCGGCGATGCAAGGGTCAaggcag                                                                                     >  4:196923/1‑149 (MQ=255)                                                                    aCGCACCGTGGGTGCCTCCAGCTCCTGCGCTGACCACTGTCGCTGCGGCGTGAATCCCGGCGTACCCGCCGCCTGATCGAAACACGCCAGGCGCTCGATATTGGACACGATCCGTGGGCAGTCCGGCGATGCACGGGTCAAggcaggca                                                                                  <  3:193280/149‑1 (MQ=255)                                                                      gCACCGTGGGTGCCTCCAGCTCCTGCGCTGACCACTGTCGCTGCGGCGTGAATCCCGGCGTACCCGCCGCCTGATCGAAACACGCCAGGCGCTCGATATTGGACACGATCCGTg                                                                                                                   >  3:66991/1‑114 (MQ=255)                                                                      gCACCGTGGGTGCCTCCAGCTCCTGCGCTGACCACTGTCGCTGCGGCGTGAATCCCGGCGTACCCGCCGCCTGATCGAAACACGCCAGGCGCTCGATATTGGACACGATCCGTg                                                                                                                   <  4:66991/114‑1 (MQ=255)                                                                        aCCGTGGGTGCCTCCAGCTCCTGCGCTGACCACTGTCGCTGCGGCGTGAATCCCGGCGTACCCGCCGCCTGATCGAAACACGCCAGGCGCTCGATATTGGACACGATCCGTGGGCAGTCCGGCGATGCACGGGTCAAGGCAGGCATTaa                                                                              <  2:172112/149‑1 (MQ=255)                                                                        aCCGTGGGTGCCTCCAGCTCCTGCGCTGACCACTGTCGCTGCGGCGTGAATCCCGGCGTACCCGCCGCCTGATCGAAACACGCCAGGCGCTCGATATTGGACACGATCCGTGGGCAGTCCGGCGATGCACGGGTCAAGGCAGGCATTaa                                                                              >  3:218115/1‑149 (MQ=255)                                                                          cGTGGGTGCCTCCAGCTCCTGCGCTGACCACTGTCGCTGCGGCGTGAATCCCGGCGTACCCGCCGCCTGATCGAAACACGCCAGGCGCTCGATATTGGACACGATCCGTGGGCAGTCCGGCGATGCACGGGTCAAGGCAGGCATTAACa                                                                            <  7:102743/149‑1 (MQ=255)                                                                           gTGGGTGCCTCCAGCTCCTGCGCTGACCACTGTCGCTGCGGCGTGAATCCCGGCGTACCCGCCGCCTGATCGAAACACGCCAGGCGCTCGATATTGGACACGATCCGTGGGCAGTCCGGCGATGCACGGGTCAAGGCAGGCATTAACaa                                                                           <  7:101133/149‑1 (MQ=255)                                                                               gTGCCTCCAGCTCCTGCGCTGACCACTGACGCTGCGGCGTGAATCCCGGCGTACCCGCCGCCTGATCGAAACACGCCAGCCGCTCGATATTGGACACGATCCGTGGGCAGTCCGGCGATGCACGGGTCAAGGCAGGCATTAACAAGaa                                                                        >  8:107586/1‑148 (MQ=255)                                                                                tGCCTCCAGCTCCTGCGCTGACCACTGTCGCTGCGGCGTGAATCCCGGCGTACCCGCCGCCTGATCGAAACACTCCAGGCGCTCGATATTGGACACGATCCGTGGGCAGTCCGGCGATGCACGGGTCAAGGCAGGCATTAACAAGaaaa                                                                      <  3:270341/149‑1 (MQ=255)                                                                                 gCCTCCAGCTCCTGCGCTGACCACTGTCGCTGCGGCGTGAATCCCGGCGTACCCGCCGCCTGATCGAAACACGCCAGGCGCTCGATATTGGACACGATCCGTGGGCAGTCCGGCGATGCACGGGTCAAGGCAGGCATTAACAAGAAAAg                                                                     <  5:6135/149‑1 (MQ=255)                                                                                    tCCAGCTCCTGCGCTGACCACTGTCGCTGCGGCGTGAATCCCGGCGTACCCGCCGCCTGATCGAAACACGCCAGGCGCTCGATATTGGACACGATCCGTGGGCAGTCCGGCGATGCACGGGTCAAGGCAGGCATTAACAAGAAAAGTaa                                                                  >  2:108237/1‑149 (MQ=255)                                                                                          tCCTGCGCTGACCACTGTCGCTGCGGCGTGAATCCCGGCGTACCCGCCGCCTGATCGAAACACGCCAGGCGCTCGATATTGGACACGATCCGTGGGCAGTCCGGCGATGCACGGGTCAAGGCAGGCATTAACAAGAAAAGTAATGAAAg                                                            >  3:196190/1‑149 (MQ=255)                                                                                                 cTGACCACTGTCGCTGCGGCGTGAATCCCGGCGTACCCGCCGCCTGATCGAAACACGCCAGGCGCTCGATATTGGACACGATCCGTGGGCAGTCCGGCGATGCACGGGTCAAGGCAGGCATTAACAAGAAAAGTAATGAAAGTCCCACg                                                     <  8:42342/149‑1 (MQ=255)                                                                                                      cACTGTCGCTGCGGCGTGAATCCCGGCGTACCCGCCGCCTGATCGAAACACGCCAGGCGCTCGATATTGGACACGATCCGTGGGCAGTCCGGCGATGCACGTGTCAAGGCAGGCATTAACAAGAAAAGTAATGAAAGTCCCACGCCAc                                                 <  7:103250/148‑1 (MQ=255)                                                                                                      cACTGTCGCTGCGGCGTGAATCCCGGCGTACCCGCCGCCTGATCGAAACACGCCAGGCGCTCGATATTGGACACGATCCGTGGGCAGTCCGGCGATGCACGGGTCAAGGCAGGCATTAACAAGAAAAGTAATGAAAGTCCCACGCCAc                                                 >  8:103250/1‑148 (MQ=255)                                                                                                      cACTGTCGCTGCGGCGTGAATACCGGCGTACACGCCGCCTGATAGAAACACGCCAGCCGCTCGATATTGCACAGGATCCGTGGGCAGTCCGCCGATGCACGGGTCAAGGCAGGCATTAACAAGAAAAGTAATGAAAGTCCCACGCCAcc                                                >  6:171784/1‑149 (MQ=255)                                                                                                              cTGCGGCGTGAATCCCGGCGTACCCGCCGCCTGATCGAAAcacgccgcagcgacagtggtcagcgcaggagctggaggcacccacggtgcgtcgc                                                                                              <  7:102026‑M2/95‑56 (MQ=255)                                                                                                              cTGCGGCGTGAATCCCGGCGTACCCGCCGCCTGATCGAAAcacgccgcagcgacagtggtcagcgcaggagctggaggcacccacggtgcgtcgc                                                                                              >  8:102026‑M2/1‑40 (MQ=255)                                                                                                              cTGCGGCGTGAATCCCGGCGTACCCGCCGCCTGATCGAAACACGCCAGGCGCTCGATATTGGACACGATCCGTGGGCAGTCCGGCGATGCACGGGTCAAGGCAGGCATTAACAAGAAAAGTAATGAAAGTCCCACGCCACCTGTATAAc                                        <  2:98976/149‑1 (MQ=255)                                                                                                               tGCGGCGTGAATCCCGGCGTACCCGCCGCCTGATCGAAAcacgccgcagcgacagtggtcagcgcaggagctggaggcacccacggtgcgtcgcgtattgatccatgagacggggcgggcgcccgaggacttgaggtttcgcctccgct                                       <  7:220200‑M2/149‑111 (MQ=255)                                                                                                                 cggcgTGAATCCCGGCGTACCCGCCGCCTGATCGAAACACGCCAGGCGCTCGATATTGGACACGATCCGTGGGCAGTCCGGCGATGCACGGGTCAAGGCAGGCATTAACAAGAAAAGTAATGAAAGTCCCACGCCACCTGTATAACGaa                                     <  4:105075/149‑1 (MQ=255)                                                                                                                 cggcgTGAATCCCGGCGTACCCGCCGCCTGATCGAAACACGCCAGGCGCTCGATATTGGACACGATCCGTGGGCAGTCCGGCGATGCACGGGTCAAGGCAGGCATTAACAAGAAAAGTAATGAAAGTCCCACGCCACCTGTATAACGaa                                     <  7:166572/149‑1 (MQ=255)                                                                                                                  ggcgTGAATCCCGGCGTACCCGCCGCCTGATCGAAAcacgccgcagcgacagtggtcagcgcaggagctggaggcacccacggtgcgtcgcgtattgatccatgagacggggcgggcgcccgaggacttgaggtttcgcctccgctctg                                    >  8:220200‑M2/1‑36 (MQ=255)                                                                                                                    cgTGAATCCCGGCGTACCCGCCGCCTGATCGAAAcacgccgcagcgacagtggtcagcgcaggagctggaggcacccacggtgcgtcgcgtattgatccatgagacggggcgggcgcccgaggacttgaggtttcgcctccgctctg                                    <  4:144742‑M2/147‑114 (MQ=255)                                                                                                                       gAATCCCGGCGTACCCGCCGCCTGATCGAAACACGCCAGGCGCTCGATATTGGACACGATCCGTGGGCAGTCCGGCGATGCACGGGTCAAGGCAGGCATTAACAAGATAAGTAATGAAAGTCCCACGCCACCTGAATAACGAATAatca                               >  5:326387/1‑149 (MQ=255)                                                                                                                        aaTCCCGGCGTACCCGCCGCCTGATCGAAACACGCCAGGCGCTCGATATTGGACACGATCCGTGGGCAGTCCGGCGATGCACGGGTCAAGGCAGGCATTAACAAGAAAAGTAATGAAAGTCCCACGCCACCTGTATAACGAATAatcat                              <  8:139924/149‑1 (MQ=255)                                                                                                                          tCCCGGCGTACCCGCCGCCTGATCGAAACACGCCAGGCGCTCGATATTGGACACGAGCCGTGGGCAGTCCGGCGATGCACGGGTCAAGGCAGGCATTAACAAGAAAAGTAATGAAAGTCCCCCGCCACCTGTATAACGAATAATCAtct                            >  7:177319/1‑149 (MQ=255)                                                                                                                             cGGCGTACCCGCCGCCTGATCGAAACACGCCAGGCGCTCGATATTGGACACGATCCGTGGGCAGTCCGGCGATGCACGGGTCAAGGCAGGCATTAACAAGAGAAGTAATGAAAGTCCCACGCCACCTGTATAACGAATAATCATCTCAc                         >  8:225009/1‑149 (MQ=255)                                                                                                                                cGTACCCGCCGCCTGATCGAAACACGCCAGGCGCTCGATATTGGACACGATCCGTGGGCAGTCCGGCGATGCACGGGTCAAGGCAGGCATTAACAAGAAAAGTAATGAAAGTCCCACGCCACCTGTATAACGAATAATCATCTCACCtt                      <  6:58626/149‑1 (MQ=255)                                                                                                                                  tACCCGCCGCCTGATCGAAACACGCCAGGCGCTCGATATTGGACACGATCCGTGGGCAGTCCGGCGATGCACGGGTCAAGGCAGGCATTAACAAGAAAAGTAATGAAAGTCCCACGCCACCTGTATAACGAATAATCATCTCACCTTaa                    <  8:177319/149‑1 (MQ=255)                                                                                                                                            cTGATCGAAACACGCCATGCTCTCGTTATTTGACACGATCCGAGGGCAGTCCGGCGATGCACGGGTCAAGGCAGGCATTAACAAGAAAAGTAATGAAAGTACGACGCCACCTGAATCAGGAATAATCATCTGACCTTAACTCTCCCACt          <  4:212473/149‑1 (MQ=255)                                                                                                                                                   aaaCACGCCAGGCGCTCGATATTGGACACGATCCGTGGGCAGTCCGGCGATGCACGGGTCAAGGCAGGCATTAACAAGAAAAGTAATGAAAGTCCCACGCCACCTGTATAACGAATAATCATCTCACCTTAACTCTCCCACTCAATCGt   <  1:108237/149‑1 (MQ=255)                                                                                                                                                    aaCACGCCAGGCGCTAGATATTGGACACGATCCGTGGGCAGTCCGGCGATGCACGGGTCAAGGCAGGCATTAACAAGAAAAGTAATGAAAGTCCCACGCCACCTGTATAACGAATAATCATCTCACCTTAACTCTCCCACTCAATCGTa  <  3:196923/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                    CTTCTTCAGAGCGGAGGCGAAACCTCAAGTCCTCGGGCGCCCGCCCCGTCTCATGGATCAATACGCGACGCACCGTGGGTGCCTCCAGCTCCTGCGCTGACCACTGTCGCTGCGGCGTGAATCCCGGCGTACCCGCCGCCTGATCGAAACACGCCAGGCGCTCGATATTGGACACGATCCGTGGGCAGTCCGGCGATGCACGGGTCAAGGCAGGCATTAACAAGAAAAGTAATGAAAGTCCCACGCCACCTGTATAACGAATAATCATCTCACCTTAACTCTCCCACTCAATCGTA  >  NC_002947/4601624‑4601919

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.