New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 4611028 = | 37 (0.710) | 3 (0.060) | 3/254 | NT | 7.4% | coding (506/516 nt) | hcpC‑II | hemolysin‑coregulated protein |
? | NC_002947 | 4611100 = | 40 (0.800) | intergenic (+62/‑2045) | hcpC‑II/PP_4084 | hemolysin‑coregulated protein/hypothetical protein |
CACTTCGAATTCAGCTTTGCCAACGAGTGCCTCAAAGCTGTAGCGCAAATCAGATTGGCTAGGCATAAAAGATCCTTGTCCGCCGTCTGAATCAACACAAAGCCCGGGCGGGCATGGCCTGCCCGGGGCATTTGCACGGGTCAGGCGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4611178‑4611028 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcggACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAGTGGTGTCGTTCGAACTCCGCGAGGGCATCAGCGCACCCTTTGAATTGGAGCTGAAACTGATCAGCTT > NC_002947/4611100‑4611243 CACTTCGAATTCAGCTTTGCCAACGAGTGCCTCAAAGCTGTAGCGCAAATCAGATTGGCTAGGCATAAAAGATCCTTGTCCGCCGTCTGAATCAACACAAAGCCCGGGCGGGCATGGCCTGCCCGGGGCATTTGCACGGGTCAGGCGGC > 8:81980/1‑149 CGCCGTCTGAATCAACACAAAGCCCGGGCGGGCATGGCCTGCCCGGGGCATTTGAACGGGACAGGCGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAGT > 5:288731/1‑149 GCCGTCTGAATCAACACAAAGCCCGGGCGGGCATGGCCTGCCCGGGGCATTTGCACGGGTCAGGCGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAGTG > 4:295127/1‑149 CCGGGCGGGAATGGCCTGCCCGGTGCATTTGCACGGGTCAGGCGGCGGTCAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAGTGGTGTCGTTCGAACTCCGCGAGG < 6:288731/149‑1 GGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAGTGGTGTCGTTCGAACTCCGCGAGGGCATCAGCGCACCCTTTGAATTGGAGCTGAAACTGATCAGCTT < 2:207705/149‑1 CACTTCGAATTCAGCTTTGCCAACGAGTGCCTCAAAGCTGTAGCGCAAATCAGATTGGCTAGGCATAAAAGATCCTTGTCCGCCGTCTGAATCAACACAAAGCCCGGGCGGGCATGGCCTGCCCGGGGCATTTGCACGGGTCAGGCGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4611178‑4611028 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcggACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAGTGGTGTCGTTCGAACTCCGCGAGGGCATCAGCGCACCCTTTGAATTGGAGCTGAAACTGATCAGCTT > NC_002947/4611100‑4611243 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |