| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4611028 = | 37 (0.710) | 3 (0.060) | 3/254 | NT | 7.4% | coding (506/516 nt) | hcpC‑II | hemolysin‑coregulated protein |
| ? | NC_002947 | 4611100 = | 40 (0.800) | intergenic (+62/‑2045) | hcpC‑II/PP_4084 | hemolysin‑coregulated protein/hypothetical protein | |||||
GCGTATCGAAAGATCACGTGGGCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAGTGGTGTCGTTCGAACTCCGCGAGGGCATCAGCGCACCCTTTGAATTGGAGCTGAAACTGATCAGCTT > NC_002947/4610961‑4611243 | gCGTATCGAAAGATCACGTGGGCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCt < 6:322703/149‑1 (MQ=34) cGTATCGAAAGATCACGTGGGCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCtt < 4:220950/149‑1 (MQ=34) gAAAGATCACGTGGGCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGc > 6:124636/1‑149 (MQ=34) aaaGATCACGTGGGCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGcc > 7:1892/1‑149 (MQ=34) aGATCACGTGGGCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTATTATGcc > 5:143688/1‑147 (MQ=21) tCACGTGGGCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGc > 7:116775/1‑148 (MQ=34) ggCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTg < 4:81772/148‑1 (MQ=34) cACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTg > 3:71892/1‑149 (MQ=34) aTGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGAAGGCCATGCCCGCCGGGGCTTTGTGTTGATGCAGACGGCGGACAAGGAGATTTTATGCGTAGCCAAGATGATTTgcga > 1:179820/1‑147 (MQ=11) gTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTa > 4:274728/1‑148 (MQ=34) gCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGc > 3:121789/1‑149 (MQ=34) gCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGc > 7:201394/1‑149 (MQ=34) cAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCtt > 7:81980/1‑149 (MQ=34) aaTACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCttt < 3:266409/149‑1 (MQ=34) cGAAGGCTCTGACGACTGGCGCGCACACGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAgg > 1:9862/1‑148 (MQ=17) aaGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCAc < 8:116775/149‑1 (MQ=32) acgacTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGc > 2:220474/1‑148 (MQ=32) cTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGc < 7:101885/149‑1 (MQ=32) gcgcgcACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCt < 4:121789/147‑1 (MQ=32) gcgcACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGTGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAAt > 2:100927/1‑149 (MQ=21) gcgcACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAg < 7:145435/143‑1 (MQ=32) gcgcACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATCCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAg > 8:145435/1‑143 (MQ=17) cgccgtctgaatcaacacaaagcccgggcgggcatggcctgcccggggcatttgaacgggacaggcggcggACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAgt > 5:288731‑M2/72‑149 (MQ=255) gccgtctgaatcaacacaaagcccgggcgggcatggcctgcccggggcatttgcacgggtcaggcggcggACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAgtg > 4:295127‑M2/71‑149 (MQ=255) GCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAgtg > 8:81980‑M1/1‑149 (MQ=255) cTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGCGGCACTCGTTGGCAAAGCTGAATTCGAAgtggtggc > 6:91484/1‑147 (MQ=21) cTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAGTGGTGTc < 8:201394/149‑1 (MQ=34) cccGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAGTGGTGTCGTTc < 8:1892/149‑1 (MQ=34) ccGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAGTGGTGTCGTTCg < 1:220474/149‑1 (MQ=33) cGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAGTGGTGTCGTTCg > 5:24971/1‑148 (MQ=32) gCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCATTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAGTGGTGTCGTTCGAACt > 6:241471/1‑149 (MQ=17) aTGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAGTGGTGTCGTTCGAACTCcgc > 3:123187/1‑149 (MQ=32) ccgggcgggaatggcctgcccggtgcatttgcacgggtcaggcggcggTCAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAGTGGTGTCGTTCGAACTCCGCGAgg < 6:288731‑M2/101‑1 (MQ=255) cccGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAGTGGTGTCGTTCGAACTCCGCGAgg > 5:79154/1‑149 (MQ=32) cccGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATGTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAGTGGTGTCGTGCGACCTCCGCGAgg > 7:220305/1‑149 (MQ=12) ccGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAGTGGTGTCGTTCGAACTCCGCGAggg > 5:246802/1‑149 (MQ=32) cGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAGTGGTGTCGTTCGAACTCCGCGAGGGc < 6:246802/149‑1 (MQ=32) ccATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAGTGGTGTCGTTCGAACTCCGCGAGGGCATCAgcg > 1:207705/1‑148 (MQ=32) cATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGTGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAGTGGTGTCGTTCGAACTCCGCGAGGGCATCAGCGCa < 1:100927/149‑1 (MQ=17) aTGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAGTGGTGTCGTTCGAACTCCGCGAGGGCATCAGCGCAc > 1:300601/1‑149 (MQ=32) ctggatttGTGTTTCTTCATACGGCGGACAAGGATCTTTTATTCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAGTGGTGTCGTTCGAACTCCGCGAGTGCATCAGCGCAACCTTTGAAt < 8:220305/144‑1 (MQ=11) cTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAGTGGTGTCGTTCGAACTCCGCGAGGGCATCAGCGCACCCTTTGAATTGGa < 3:50099/149‑1 (MQ=34) tgtTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAGTGGTGTCGTTCGAACTCCGCGAGGGCATCAGCGCACCCTTTGAATTGGAGCTg > 3:207222/1‑148 (MQ=34) tGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAGTGGTGTCGTTCGAACTCCGCGAGGGCATCAGCGCACCCTTTGAATTGGAGCTGaaa < 4:207222/148‑1 (MQ=34) cAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAGTGGTGTCGTTCGAACTCCGCGAGGGCATCAGCGCACCCTTTGAATTGGAGCTGAAACTGAt < 2:179820/148‑1 (MQ=34) ggcggACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAGTGGTGTCGTTCGAACTCCGCGAGGGCATCAGCGCACCCTTTGAATTGGAGCTGAAACTGATCAGCtt < 2:207705‑M2/144‑1 (MQ=255) | GCGTATCGAAAGATCACGTGGGCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAGTGGTGTCGTTCGAACTCCGCGAGGGCATCAGCGCACCCTTTGAATTGGAGCTGAAACTGATCAGCTT > NC_002947/4610961‑4611243 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |