New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4763752	46 (0.880)	4 (0.080)	4/252	NT	9.4%	coding (150/1659 nt)	pvdE	pyoverdine ABC transporter ATP‑binding protein/permease
	?	NC_002947	= 4763793	34 (0.690)					coding (191/1659 nt)	pvdE	pyoverdine ABC transporter ATP‑binding protein/permease

ACCCATGACCAGTAAACCACGTGGCGCCGTCAGCGAACTGTTCGGCCTGCTCAAACCCTTCTGGCCCCTGGTGACGGTTTCGATCATCCTGGGCATGGTCGGTGGCCTCAGTGTCACCGCCCTGCTGGCGACCATCAACTCGGCCCTGCACAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4763599‑4763752 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcacagcCCGGCAAAACCCAGGACCAC‑GCCTTGAGTCAGGCCGGTGTCGCTGTGCAGGGCCGAGTTGATGGTCGCCAGCAGGGCGGTGACACTGAGGCCACCGACCATGCCCAGGATGATCGAAACCGTCACCAGGGGCCAGAAGGGTTTGAG  <  NC_002947/4763793‑4763648                                                                                                                                                                                                                                                                                                               ACCCATGACCAGTAAACCACGTGGCGCCGTCAGCGAACTGTTCGGCCTGCTCAAACCCTTCTGGCCCCTGGTGACGGTTTCGATCATCCTGGGCATGGTCGGTGGCCTCAGTGTCACCGCCCTGCTGGCGACCATCAACTCGGCCCTGC                                                                                                                                                          >  4:89078/1‑149   CCATGACCAGTAAACCACGTGGCGCCGTCAGCGAACTGTTCGTCCTGCTCAAACCCTTCTGGACCCTGGTGACGGTTTCTATCATACTGGGCATGGTCGGTGGCATCAGTGTCACCGCCCTGCTTGCGCACATAAACTAGGACCTGagc                                                                                                                                                        >  4:203334/1‑146    CATGACCAGTTAACCACGTGGCGCCGTCAGCGAACTGTTCGGCCTGCTCAAACCCTTCTGGCCCCTGGTGACGGTTTCGATCATCCTGGGCATGGTCGGTGGCCTCAGTGTCACCGCCCTGCTGGCGACCATCAACTCGGCCCTGCACA                                                                                                                                                       <  7:71578/149‑1      TGACCAGTAAACCACGTGGCGCCGTCAGCGAACTGTTCGGCCTGCTCAAACCCTTCTGGCCCCTGGTGACGGTTTCGATCATCCTGGGCATGGTCGGTGGCCTCAGTGTCACCGCCCTGCTGGCGACCATCAACTCGGCCCTGCACAGC                                                                                                                                                     <  5:301298/149‑1       GACCAGTAAACCACGTGGCGCCGTCAGCGAACTGTTCGGCCTGCTCAAACCCTTCTGGCCCCTGGTGACGGTTTCGATCATCCTGGGCATGGTCGGTGGCCTCAGTGTCACCGCCCTGCTGGCGACCATCAACTCGGCCCTGCACAGC                                                                                                                                                     >  5:35300/1‑148                                                     AAACCCTTCTGGCCCCTGGTGACGGTTTCGATCATCCTGGGCATGGTCGGTGGCCTCAGTGTCACCGCCCTGCTGGCGACCATCAACTCGGCCCTGCACAGCCCGGCAAAACCCAGGACCAC‑GCCTTGAGTCAGGCCGGTGTCGCTGTG                                                                                                     >  3:82189/1‑149                                                             CTGGCCCCTGGTGACGGTTTCGATCATCCTGGGCATGGTCGGTGGCCTCAGTGTCACCGCCCTGCTGGCGACCATCAACTCGGCCCTGCACAGCCCGGCAAAACCCAGGACCAC‑GCCTTGAGTCAGGCCGGTGTCGCTGTGCAGGGCC                                                                                              <  4:82189/148‑1                                                                  CCCTGGTGACGGTTTCGATCATCCTGGGCATGGTCGGTGGCCTCAGTGTCACCGCCCTGCTGGCGACCATCAACTCGGCCCTGCACAGCCCGGCAAAACCCAGGACCAC‑GCCTTGAGTCAGGCCGGTGTCGCTGTGCAGG                                                                                                 >  2:74995/1‑140                                                                  CCCTGGTGACGGTTTCGATCATCCTGGGCATGGTCGGTGGCCTCAGTGTCACCGCCCTGCTGGCGACCATCAACTCGGCCCTGCACAGCCCGGCAAAACCCAGGACCAC‑GCCTTGAGTCAGGCCGGTGTCGCTGTGCAGG                                                                                                 <  1:74995/140‑1                                                                                                                                                     CACAGCCCGGCAAAACCCAGGACCACGGCCTTGAGTCAGGCCGGTGTCGCTGTGCAGGGCCGAGTTGATGGTCGCCAGCAGGGCGGTGACACTGAGGCAACCGACCATGCCCAGGATGATCGAAACCGTCACCAGGGGCCAGAAGGGTT      >  1:169449/1‑149                                                                                                                                                      ACAGCCCGGCAAAACCCAGGACCAC‑GCCTTGAGTCAGGCCGGTGTCGCTGTGGAGCGGCGAGTTGATGGTCGCCAGCAGGGCGGTGACACTGAGGCCACCGACCATGCCCAGGTTGATCGAAACCGTCCCCAGGGGCCAGCAGGGTTT     >  4:173061/1‑148                                                                                                                                                      ACAGCCCGGCAAAACCCAGGACCAC‑GCCTTGAGTCAGGCCGGTGTCGCTGTGCAGGGCCGAGTTGATGGTCGCCAGCAGGGCGGTGACACTGAGGCCACCGACCATGCCCAGGATGATCGAAACCGTCACCAGGGGCCAGAA           >  5:300848/1‑142                                                                                                                                                      ACAGCCCGGCAAAACCCAGGACCAC‑GCCTTGAGTCAGGCCGGTGTCGCTGTGCAGGGCCGAGTTGATGGTCGCCAGCAGGGCGGTGACACTGAGGCCACCGACCATGCCCAGGATGATCGAAACCGTCACCAGGGGCCAGAA           <  6:300848/142‑1                                                                                                                                                       CAGCCCGGCAAAACCCAGGACCAC‑GCCTTGAGTCAGGCCGGTGTCGCTGTGCAGGGCCGAGTTGATGGTCGCCAGCAGGGCGGTGACACTGAGGCCACCGACCATGCCCAGGATGATCGAAACCGTCACCAGGGGCCAGAAGGGTTTGA   <  2:59025/149‑1                                                                                                                                                       CAGCCCGGCAAAACCCAGGACCAC‑GCCTTGAGTCAGGCCGGTGTCGCTGTGCAGGGCCGAGGTGATGGTCGCCAGCAGGGCGGTGACACTGAGGCCAGCGACCATGCCCAGGATGATCGAAACCGTCACCAGGGGCCAGAAGGGTTTGA   <  3:182574/149‑1                                                                                                                                                         GCCCGGCAAAACCCAGGACCAC‑GCCTTGAGTCAGGCCGGTGTCGCTGTGCAGGGCCGAGTTGATGGTCGCCAGCAGGGCGGTGACACTGAGGCCACCGACCATGCCCAGGATGATCGAAACCGTCACCAGGGGCCAGAAGGGTTTGAG  >  5:40380/1‑148                                                                                                                                                          CCCGGCAAAACCCAGGACCAC‑GCCTTGAGTCAGGCCGGTGTCGCTGTGCAGGGCCGAGTTGATGGTCGCCAGCAGGGCGGTGACACTGAGGCCACCGACCATGCCCAGGATGATCGAAACCGTCACCAGGGGCCAGAAGGGTTTGAG  >  2:202323/1‑147                                                                                                                                                                                                                                                                                                               ACCCATGACCAGTAAACCACGTGGCGCCGTCAGCGAACTGTTCGGCCTGCTCAAACCCTTCTGGCCCCTGGTGACGGTTTCGATCATCCTGGGCATGGTCGGTGGCCTCAGTGTCACCGCCCTGCTGGCGACCATCAACTCGGCCCTGCACAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4763599‑4763752 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcacagcCCGGCAAAACCCAGGACCAC‑GCCTTGAGTCAGGCCGGTGTCGCTGTGCAGGGCCGAGTTGATGGTCGCCAGCAGGGCGGTGACACTGAGGCCACCGACCATGCCCAGGATGATCGAAACCGTCACCAGGGGCCAGAAGGGTTTGAG  <  NC_002947/4763793‑4763648

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.