New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4799323	59 (1.130)	4 (0.080)	4/260	NT	6.8%	coding (421/486 nt)	PP_4226	hypothetical protein
	?	NC_002947	= 4799397	52 (1.020)					intergenic (+9/‑3)	PP_4226/PP_5664	hypothetical protein/hypothetical protein

GATCGTCGTCGGCAGCACCATTACCGGTGGCCTGCTTGGCGCGACGGTAGGCGCATTCGCCGGCGGCGCCGGAACCATTCCGCTCGCTGGTGCAGGCGCGGTCATGGGCCTCAAGGTCAGCGGCTGGATCCTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4799190‑4799323 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgTCGCGCTCCTCATCCGCCGATACGCGGCAAGCCCTCGACGAAGAACTCGGCGATGGAAGCCAGCCCCAGCGCGCCAAG  <  NC_002947/4799397‑4799320                                                                                                                                                                                                                      GATCGTCGTCGGCAGCACCATTACCGGTGGCCTGCTTGGCGCGACGGTAGGCGCATTCGCCGGCGGCGCCGGAACCATTCCGCTCGCTGGTGCAGGCGCGGTCATGGGCCTCAAGGTCAGCGGCTGGATCCTTGTCGCGCTCCTCATCC                                                                 >  4:93920/1‑149                                              GGTAGGCGCATTCGCCGGCGGCGCCGGAACCATTCCGCTCGCTGGTGCAGGCGCGGTCATGGGCCTCAAGGTCAGCGGCTGGATCCTTGTCGCGCTCCTCATCCGCCGATACGCGGCAAGCCCTCGACGAAGAACTCGGCGATGGAAGC                    >  7:123593/1‑149                                                               GCGGCGCCGGAACCATTCCGCTCGCTGGTGCAGGCGCGGTCATGGGCCTCAAGGTCAGCGGCTGGATCCTTGTCGCGCTCCTCATCCGCCGATACGCGGCAAGCCCTCGACGAAGAACTCGGCGATGGAAGCCAGCCCCAGCGCGCCAA   <  8:123593/149‑1                                                                CGGCGCCGGAACCATTCCGCTCGCTGGTGCAGGCGCGGTCATGGGCCTCAAGGTCAGCGGCTGGATCCTTGTCGCGCTCCTCATCCGCCGATACGCGGCAAGCCCTCGACGAAGAACTCGGCGATGGAAGCCAGCCCCAGCGCGCCAAG  <  3:93920/149‑1                                                                                                                                                                                                                      GATCGTCGTCGGCAGCACCATTACCGGTGGCCTGCTTGGCGCGACGGTAGGCGCATTCGCCGGCGGCGCCGGAACCATTCCGCTCGCTGGTGCAGGCGCGGTCATGGGCCTCAAGGTCAGCGGCTGGATCCTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4799190‑4799323 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgTCGCGCTCCTCATCCGCCGATACGCGGCAAGCCCTCGACGAAGAACTCGGCGATGGAAGCCAGCCCCAGCGCGCCAAG  <  NC_002947/4799397‑4799320

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.