New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 4963231 = | 75 (1.440) | 4 (0.080) | 3/254 | NT | 6.1% | coding (424/1218 nt) | fleS | two‑component system sensor histidine kinase FleS |
? | NC_002947 | 4963267 = | 52 (1.050) | coding (388/1218 nt) | fleS | two‑component system sensor histidine kinase FleS |
CTGGTGCGCGAAGCCAACCCGGCCGCCTGCGAGTTGCTCGGTGAGCCTCTGATCGGCCAATTGTGGCGCCAGGTGATCGCCCGTAGCTTTGCCCCGCGCAAGGACGACGGCCACGAAGTCTCGCTGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4963360‑4963231 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcgcgGGGCAAAGCTACGGGCGATCACCTGGCGCCACAATTGGCCGATCAGAGGCTCA‑CCGAGCAACTCGCAGGCGGCCGGGTTGGCTTCGCGCACCAGGCCCTGACCATCGATCACGATCACCCCGCCAGGCAGCAAGTCCAGCAGGTT > NC_002947/4963267‑4963411 CTGGTGCGCGAAGCCAACCCGGCCGCCGGCGAGTTGCTCGGTGAGCCTCTGATCGGCCAATTGTGGCGCCAGGTGATCGCCCGTAGCTTTGCCCCGCGCAAGGACGACGGCCACGAAGTCTCGCTGC < 6:90480/127‑1 CCCCGCGCAAGGACGACGGCCACGAAGTCTCGCTGCGCGGGGCAAAGCTACGGGCGATCACCTGGCGCCACAATTGGCCGATCAGAGGCTCACCCGAGCAACTCGCAGGCGGCCGGGTTGGCTTCGC < 1:208496/127‑1 CCCCGCGCAAGGACGACGGCCACGAAGTCTCGCTGCGCGGGGCAAAGCTACGGGCGATCACCTGGCGCCACAATTGGCCGATCAGAGGCTCA‑CCGAGCAACTCGCAGGCGGCCGGGTTGGCTTCGCGCACCAGGCCCTGACCATCGAT > 6:76017/1‑148 CCCCGCGCAAGGACGACGGCCACGAAGTCTCGCTGCGCGGGGCAAAGCTACGGGCGATCACCTGGCGCCACAATTGGCCGATCAGAGGCTCA‑CCGAGCAACTCGCAGGCGGCCGGGTTGGCTTCGC > 2:208496/1‑126 CCCGCGCAAGGACGACGGCCACGAAGTCTCGCTGCGCGGGGCAAAGCTACGGGCGATCACCTGGCGCCACAATTGGCCGATCAGAGGCTCA‑CCGAGCAACTCGCAGGCGGCCGGGTTGGCTTCGCGCACCAGGCCCTGACCATCGATCA > 7:188738/1‑149 GCGCGGGGCAAAGCTACGGGCGATCACCTGGCGCCACAATTGGCCGATCAGAGGCTCA‑CCGAGCAACTCGCAGGCGGCCGGGTTGGCTTCGCGCACCAGGCCCTGACCATCGATCACGATCACCCCGCCAGGCAGCAAGTCCAGCAGGT > 4:295523/1‑149 GCGCGGGGCAAAGCTACGGGCGATCACCTGGCGCCACAATTGGCCGATCAGAGGCTCA‑CCGAGCAACTCGCAGGCGGCCGGGTTGGCTTCGCGCACCAGGCCCTGACCATCGATCACGATCACCCCGCCAGGCAGCAAGTCCAGCAGG < 3:28033/148‑1 CGCGGGGCAAAGCTACGGGCGATCACCTGGCGCCACAATTGGCCGATCAGAGGCTCA‑CCGAGCAACTCGCAGGCGGCCGGGTTGGCTTCGCGCACCAGGCCCTGACCATCGATCACGATCACCCCGCCAGGCAGCAAGTCCAGCAGGTT < 5:286222/149‑1 CTGGTGCGCGAAGCCAACCCGGCCGCCTGCGAGTTGCTCGGTGAGCCTCTGATCGGCCAATTGTGGCGCCAGGTGATCGCCCGTAGCTTTGCCCCGCGCAAGGACGACGGCCACGAAGTCTCGCTGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4963360‑4963231 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcgcgGGGCAAAGCTACGGGCGATCACCTGGCGCCACAATTGGCCGATCAGAGGCTCA‑CCGAGCAACTCGCAGGCGGCCGGGTTGGCTTCGCGCACCAGGCCCTGACCATCGATCACGATCACCCCGCCAGGCAGCAAGTCCAGCAGGTT > NC_002947/4963267‑4963411 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |