New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5196117	57 (1.090)	3 (0.060)	3/250	NT	5.2%	coding (398/690 nt)	ybgJ	allophanate hydrolase subunit 1
	?	NC_002947	= 5196133	56 (1.150)					coding (382/690 nt)	ybgJ	allophanate hydrolase subunit 1

GATCAGGTTCCAGCCACCCGGCGATACTGCCGGGTAGGCCGCCGTCTGGCGCTCGGCAATACCCACGCTGCCCGCCGCCACGCGCTTGCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5195963‑5196117 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acccggtgTTTGCCCTGGGCTTCGCACCGGGTTTCGGCTTCATGGGCCTGGTCGACGAGCGCCTGGCCAGCCCTCGTCTGAGTACCCCACGCAAGCGCGTGGCGGCGGGCAGCGTGGGTATTGCCGAGCGCCAGACGGCGGCCTACCCGGCA  <  NC_002947/5196133‑5195990                                                                                                                                                                                                                                                                                                             GATCAGGTTCCAGCCACCCGGCGATACTGCCGGGTAGGCCGCCGTCTGGCGCTCGGCAATACCCACGCTGCCCGCCGCCACGCGCTTGCGTGGGGTACTCAGGCGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAAC                                                                                                                                                        >  6:261384/1‑149    CAGGTTCCAGCCACCCGGCGATACTGCCGGGTAGGCCGCCGTCTGGCGCTCGGCAATACCCACGCTGCCCGCCGCCACGCGCTTGCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCG                                                                                                                                                     >  8:195861/1‑149    CAGGTTCCAGCCACCCGGCGATACTGCCGGGTAGGCCGCCGTCTGGCGCTCGGCAATACCCACGCTGCCCGCCGCCACGCGCTTGCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCG                                                                                                                                                     >  8:204492/1‑149     AGGTTCCAGCCACCCGGCGATACTGCCGGGTAGGCCGCCGTCTGGCGCTCGGCAATACCCACGCTGCCCGCCGCCACGCGCTTGCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGG                                                                                                                                                    >  5:111630/1‑149      GGTTCCAGCCACCCGGCGATACTGCCGGGTAGGCCGCCGTCTGGCGCTCGGCAATACCCACGCTGCCCGCCGCCACGCGCTTGCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGT                                                                                                                                                   <  6:72641/149‑1               CACCCGGCGATACTGCCGGGTAGGCCGCCGTCTGGCGCTCGGCAATACCCACGCTGCCCGCCGCCACGCGCTTGCGTGGGGTACTCAGACGAGTGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCC                                                                                                                                                      >  8:132261/1‑137               CACCCGGCGATACTGCCGGGTAGGCCGCCGTCTGGCGCTCGGCAATACCCACGCTGCCCGCCGCCACGCGCTTGCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCC                                                                                                                                                      <  7:132261/137‑1                                      GCCGCCGTCTGGCGCTCGGCAATACCCACGCTGCCCGCCGCCACGCGCTTGCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGTTTGCCCTGGGCTTCGCACCGGGTTTCGGCT                                                                                                                   <  2:270834/149‑1                                                    CTCGGCAATACCCACGCTGCCCGCCGCCACGCGCTTGCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGTTTGCCCTGGGCTTCGCACCGGGTTTC                                                                                                                       >  7:208019/1‑131                                                    CTCGGCAATACCCACGCTGCCCGCCGCCACGCGCTTGCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGTTTGCCCTGGGCTTCGCACCGGGTTTC                                                                                                                       <  8:208019/131‑1                                                                                                                                                     CCCGGTGTTTGCCCTGGGCTTCGCACCGGGTTTCGGCTTCATGGGCCTGGTCGACGAGCGCCTGGCCAGCCCTCGTCTGAGTACCCCACGCAAGCGCGTGGCGGCGGGCAGCGTGGGTATTGCCGAGCGCCAGACGGCGGCCTACCCGG    <  3:295093/149‑1                                                                                                                                                      CCGGTGTTTGCCCTGGGCTTCGCACCGGGTTTCGGCTTCATGGGCCTGGTCGACGAGCGCCTGGCCAGCCCTCGTCTGAGTACCCCACGCAAGCGCGTGGCGGCGGGCAGCGTGGGTATTGCCGAGCGCCAGACGGCGGCCTACCCGG    >  6:109866/1‑148                                                                                                                                                      CCGGTGTTTGCCCTGGGCTTCGCACCGGGTTTCGGCTTCATGGGCCTGGTCGACGAGCGCCTGGCCAGCCCTCGTCTGAGTACCCCACGCAAGCGCGTGGCGGCGGGCAGCGTGGGTATTGCCGAGCGCCAGACGGCGGCCTACCCGG    >  6:316558/1‑148                                                                                                                                                      CCGGTGTTTGCCCTGGGCTTCGCACCGGGTTTCGGCTTCATGGGCCTGGTCGACGAGCGCCTGGCCAGCCCTCGTCTGAGTACCCCACGCAAGCGCGTGGCGGCGGGCAGCGTGGGTATTGCCGAGCGCCAGACGGCGGCCTACCCGG    >  8:107463/1‑148                                                                                                                                                       CGGTGTTTGCCCTGGGCTTCGCACCGGGTTTCGGCTTCATGGGCCTGGTCGACGAGCGCCTGGCCAGCCCTCGTCTGAGTACCCCACGCAAGCGCGTGGCGGCGGGCAGCGTGGGTATTGCCGAGCGCCAGACGGCGGCCTACCCGGCA  <  5:109866/149‑1                                                                                                                                                       CGGTGTTTGCCCTGGGCTTCGCACCGGGTTTCGGCTTCATGGGCCTGGTCGACGAGCGCCTGGCCAGCCCTCGTCTGAGTACCCCACGCAAGCGCGTGGCGGCGGGCAGCGTGGGTATTGCCGAGCGCCAGACGGCGGCCTACCCGGCA  <  5:96698/149‑1                                                                                                                                                                                                                                                                                                             GATCAGGTTCCAGCCACCCGGCGATACTGCCGGGTAGGCCGCCGTCTGGCGCTCGGCAATACCCACGCTGCCCGCCGCCACGCGCTTGCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5195963‑5196117 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acccggtgTTTGCCCTGGGCTTCGCACCGGGTTTCGGCTTCATGGGCCTGGTCGACGAGCGCCTGGCCAGCCCTCGTCTGAGTACCCCACGCAAGCGCGTGGCGGCGGGCAGCGTGGGTATTGCCGAGCGCCAGACGGCGGCCTACCCGGCA  <  NC_002947/5196133‑5195990

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.