New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5606005 =	44 (0.850)	4 (0.080)	4/258	NT	7.4%	coding (2134/2196 nt)	cyaB	cyclolysin secretion/processing ATP‑binding protein CyaB
	?	NC_002947	5606040 =	58 (1.150)					coding (2099/2196 nt)	cyaB	cyclolysin secretion/processing ATP‑binding protein CyaB

GGGCAGATCATCGAGCAAGGGACTCATGATGAGCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5606041‑5606005 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcCCACGCTCCATGACCACGATGCGGTCGGCATGGCGTACTGCCGAAAGCCGATGGGCAATGATGATGACCGTGCGCTGCGCGCAAATCCGCGCCATGTT  >  NC_002947/5606040‑5606137                                                                                                                                         GGGCAGATCATCGAGCAAGGGACTCATGATGAGCTGCCCACGCTCCATGACCACGATGCGGTCGGCATGGCGTACTGCCGAAAGCCGATGGGCAATGATGATGACCGTGCGCTGCGCGCAAATCCGCGCCATGTT  <  1:284379/135‑1 GGGCAGATCATCGAGCAAGGGACTCATGATGAGCTGCCCACGCTCCATGACCACGATGCGGTCGGCATGGCGTACTGCCGAAAGCCGATGGGCAATGATGATGACCGTGCGCTGCGCGCAAATCCGCGCCATGTT  >  2:284379/1‑135   GCAGATCATCGAGCAAGGGACTCATGATGAGCTGCCCACGCTCCATGACCACGATGCGGTCGGCATGGCGTACTGCCGAAAGCCGATGGGCAATGATGATGACCGTGCGCTGCG                     >  7:133104/1‑114   GCAGATCATCGAGCAAGGGACTCATGATGAGCTGCCCACGCTCCATGACCACGATGCGGTCGGCATGGCGTACTGCCGAAAGCCGATGGGCAATGATGATGACCGTGCGCTGCG                     <  8:133104/114‑1                                                                                                                                         GGGCAGATCATCGAGCAAGGGACTCATGATGAGCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5606041‑5606005 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcCCACGCTCCATGACCACGATGCGGTCGGCATGGCGTACTGCCGAAAGCCGATGGGCAATGATGATGACCGTGCGCTGCGCGCAAATCCGCGCCATGTT  >  NC_002947/5606040‑5606137

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.