New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5606005 =	44 (0.850)	4 (0.080)	4/258	NT	7.4%	coding (2134/2196 nt)	cyaB	cyclolysin secretion/processing ATP‑binding protein CyaB
	?	NC_002947	5606040 =	58 (1.150)					coding (2099/2196 nt)	cyaB	cyclolysin secretion/processing ATP‑binding protein CyaB

CGGGGCCGTCCATGCTCCGGCGCTTTCGCCATGCCGTCCTCCACGCATCCCGGTAGCGCTCGGCAAGGTCCTTGAACGCCACACTCATACGGCGGCCCCGAGCTGCAGTTGATGCAGGTAGGCATAGGTGCCCTGTGGATAACCCAGCAGCTCATCATGAGTCC‑‑CTTGCTCGATGATCTGCCCACGCTCCATGACCACGATGCGGTCGGCATGGCGTACTGCCGAAAGCCGATGGGCAATGATGATGACCGTGCGCTGCGCGCAAATCCGCGCCATGTTCTGCTGGATGATCC  >  NC_002947/5605859‑5606151                                                                                                                                                   |                                                                                                                                                     cGGGGCCGTCCATGCTCCGGCGCTTTCGCCATGCCGTCCTCCACGCATCCCGGTAGCGCTCGGCAAGGTCCTTGAACGCCACACTCATACGGCGGCCCCGAGCTGCAGTTGATGCAGGTAGGCATAGGTGCCCTGTGGATAACCcagca                                                                                                                                                    <  7:135953/149‑1 (MQ=255)  ggggCCGTCCATGCTCCGGCGCTTTCGCCATGCCGTCCTCCACGCATCCCGGTAGCGCTCGGCAAGGTCCTTGAACGCCACACTCATACGGCGGCCCCGAGCTGCAGTTGATGCAGGTAGGCATAGGTGCCCTGTGGATAACCcagcag                                                                                                                                                   >  8:212423/1‑149 (MQ=255)  ggggCCGTCCATGCTCCGGCGCTTTCGCCATGCCGTCCTCCACGCATCCCGGTAGCGCTCGGCAAGGTCCTTGAACGCCACACTCATACGGCGGCCCCGAGCTGCAGTTGATGCAGGTAGGCATAGGTGCCCTGTGGATAACCcag                                                                                                                                                      >  5:246134/1‑146 (MQ=255)  ggggCCGTCCATGCTCCGGCGCTTTCGCCATGCCGTCCTCCACGCATCCCGGTAGCGCTCGGCAAGGTCCTTGAACGCCACACTCATACGGCGGCCCCGAGCTGCAGTTGATGCAGGTAGGCATAGGTGCCCTGTGGATAACCcag                                                                                                                                                      <  6:246134/146‑1 (MQ=255)  ggggCCGTCCATGCTCCGGCGCTTTCGCCATGCCGTCCTCCACGCATCCCGGTAGCGCTCGGCAAGGTCCGTGAACGCCACACTCATACGGCGGCCCCGAGCTGCAGTTGATGCAGGTAGGCATAGGTGCCCTGTGGAGACCGcagcag                                                                                                                                                   >  8:208534/1‑149 (MQ=255)        gTCCATGCTCCGGCGCTTTCGCCATGCCGTCCTCCACGCATCCCGGTAGCGCTCGGCAAGGTCCTTGAACGCCACACTCATACGGCGGCCCCGAGCTGCAGTTGATGCAGGTAGGCATAGGTGCCCTGTGGATAACCCAGCAGCtcat                                                                                                                                              >  8:66468/1‑148 (MQ=255)            aTGCTCCGGCGCTTTCGCCATGCCGTCCTCCACGCATCCCGGTAGCGCTCGGCAAGGTCCTTGAACGCCACACTCATACGGCGGCCCCGAGCTGCAGTTGATGCAGGTAGGCATAGGTGCCCTGTGGATAACCCAGCAGCTCATCATGa                                                                                                                                         <  1:223199/149‑1 (MQ=255)            aTGCTCCGGCGCTTTCGCCATGCCGTCCTCCACGCATCCCGGTAGCGCTCGGCAAGGTCCTTGAACGCCACACTCATACGGCGGCCCCGAGCTGCAGTTGATGCAGGTAGGCATAGGTGCCCTGTGGATAACCCAGCAGCTCATCATGa                                                                                                                                         <  8:148571/149‑1 (MQ=255)            aTGCTCCGGCGCTTTCGCCATGCAGTACTCCCCGCATCCCGGTAGCGCTCGGCAAGGGCCTTGAACGCCACTCTCATACGGCGGCCCCGAGCTGCAGTTGATGCAGGTAGGCATAGGTGCCCTGTGGATAACCCAGCAGCTCATCATGa                                                                                                                                         <  8:277288/149‑1 (MQ=255)                          tCGCCATGCCGTCCTCCACGCATCCCGGTAGCGCTCGGCAAGGTCCTTGAACGCCACACTCATACGGCGGCCCCGAGCTGCAGTTGATGCAGGTAGGCATAGGTGCCCTGTGGATAACCCAGCAGCTCATCATGAGTCC‑‑CTTGCTCga                                                                                                                          <  2:301683/148‑1 (MQ=255)                           cGCCATGCCGTACTCCACGCAACCCGGTAGCTCTCTGCAAGGTCCTTGAACGCCACACTCATACGTCGGCCACGAGCTGCAGTTGATGCATGTAGGCATATGTGCCCTGTGTATAATCCAGCAGCTCATCATTAGTCC‑‑CTTGCTCgat                                                                                                                         <  4:10575/148‑1 (MQ=255)                              cATGCCGTCCTCCACGCATCCCGGTAGCGCTCGGCAAGGTCCTTGAACGCCACACTCATACGGCGGCCCCGAGCTGCAGTTGATGCAGGTAGGCATAGGTGCCCTGTGGATAACCCAGCAGCTCATCATGAGTCC‑‑CTTGCTCGATGATc                                                                                                                     >  5:158529/1‑149 (MQ=255)                                  ccGTCCTCCACGCATCCCGGTAGCGCTCGGCAAGGTCCTTGAACGCCACACTCATACGGCGGCCCCGAGCTGCAGTTGATGCAGGTAGGCATAGGTGCCCTGTGGATAACCCAGCAGCTCATCATGAGTCC‑‑CTTGCTCGATGATCTGcc                                                                                                                 >  2:174034/1‑149 (MQ=255)                                  ccGTCCTCCACGCATCCCGGTAGCGCTCGGCAAGGTCCTTGAACGCCACACTCATACGGCGGCCCCGAGCTGCAGTTGATGCAGGTAGGCATAGGTGCCCTGTGGATAACCCAGCAGCTCATCATGAGTCC‑‑CTTGCTCGATGATCTGcc                                                                                                                 <  3:71915/149‑1 (MQ=255)                                            cGCATCCCGGTAGCGCTCGGCAAGGTCCTTGAACGCCACACTCATACGGCGGCCCCGAGCTGCAGTTGATGCAGGTAGGCATAGGTGCCCTGTGGATAACCCAGCAGCTCATCATGAGTCC‑‑CTTGCTCGATGATCTGCCCACGCTCCAt                                                                                                       >  2:264598/1‑149 (MQ=255)                                                tCCCGGTAGCGCTCGGCAAGGTCCTTGAACGCCACACTCATACGGCGGCCCCGAGCTGCAGTTGATGCAGGTAGGCATAGGTGCCCTGTGGATAACCCAGCAGCTCATCATGAGTCC‑‑CTTGCTCGATGATCTGCCCACGCTCCATGAc                                                                                                    >  7:257706/1‑148 (MQ=255)                                                 aacatggcgcggatttgcgcgcagcgcacggtcatcatcattgcccatcggctttcggcagtacgccatgccgaccgcatcgtggtcatggagcgtggGCAGCTCATCATGAGTCC‑‑CTTGCTCGATGATCTGccc                                                                                                                >  2:284379‑M1/99‑135 (MQ=255)                                                 aacatggcgcggatttgcgcgcagcgcacggtcatcatcattgcccatcggctttcggcagtacgccatgccgaccgcatcgtggtcatggagcgtggGCAGCTCATCATGAGTCC‑‑CTTGCTCGATGATCTGccc                                                                                                                <  1:284379‑M1/37‑1 (MQ=255)                                                   cGGTAGCGCTCGGCAAGGTCCTTGAACGCCACACTCATACGGCGGCCCCGAGCTGCAGTTGATGCAGGTAGGCATAGGTGCCCTGTGGATAACCCAGCAGCTCATCATGAGTCC‑‑CTTGCTCGATGATCTGCCCACGCTCCATGa                                                                                                     >  6:270354/1‑144 (MQ=255)                                                   cGGTAGCGCTCGGCAAGGTCCTTGAACGCCACACTCATACGGCGGCCCCGAGCTGCAGTTGATGCAGGTAGGCATAGGTGCCCTGTGGATAACCCAGCAGCTCATCATGAGTCC‑‑CTTGCTCGATGATCTGCCCACGCTCCATGa                                                                                                     <  5:270354/144‑1 (MQ=255)                                                          gcTCGGCAAGGTCCTTGAACGCCACACTCATACGGCGGCCCCGAGCTGCAGTTGATGCAGGTAGGCATAGGTGCCCTGTGGATAACCCAGCAGCTCATCATGAGTCC‑‑CTTGCTCGATGATCTGCCCACGCTCCATGACCACGATGTGGt                                                                                         >  5:101620/1‑149 (MQ=255)                                                          gcTCGGCAAGGTCCTTGAACGCCACACTCATACGGCGGCCCCGAGCTGCAGTTGATGCAGGTAGGCATAGGTGCCCTGTGGATAACCCAGCAGCTCATCATGAGTCC‑‑CTTGCTCGATGATCTGCCCACGCTCCATGACCACGATGCGGt                                                                                         >  1:70607/1‑149 (MQ=255)                                                            tCGGCAAGGTCCTTGAACGCCACACTCATACGGCGGCCCCGAGCTGCAGTTGATGCAGGTAGGCATAGGTGCCCTGTGGATAACCCAGCAGCTCATCATGAGTCC‑‑CTTGCTCGATGATCTGCCCACGCTCCATGACCACGATGCGGTCg                                                                                       >  2:157418/1‑149 (MQ=255)                                                                cAAGGTCCTTGAACGCCACACTCATACGGCGGCCCCGAGCTGCAGTTGATGCAGGTAGGCATAGGTGCCCTGTGGATAACCCAGCAGCTCATCATGAGTCC‑‑CTTGCTCGATGATCTGCCCACGCTCCATGACCACGATGCGGTCGGCAt                                                                                   <  3:34875/149‑1 (MQ=255)                                                                   ggTCCTTGAACGCCACACTCATACGGCGGCCCCGAGCTGCAGTTGATGCAGGTAGGCATAGGTGCCCTGTGGATAACCCAGCAGCTCATCATGAGTCC‑‑CTTGCTCGATGATCTGCCCACGCTCCATGACCACGATGCGGTCGGCATGGc                                                                                <  1:174034/149‑1 (MQ=255)                                                                   ggTCCTTGAACGCCACACTCATACGGCGGCCCCGAGCTGCAGTTGATGCAGGTAGGCATAGGTGCCCTGTGGATAACCCAGCAGCTCATCATGAGTCC‑‑CTTGCTCGATGATCTGCCCACGCTCCATGACCACGATGCGGTCGGCATGGc                                                                                <  7:66468/149‑1 (MQ=255)                                                                    cgcagcgcacggtcatcatcattgcccatcggctttcggcagtacgccatgccgaccgcatcgtggtcatggagcgtggGCAGCTCATCATGAGTCC‑‑CTTGCTCGATGATCTGc                                                                                                                  <  8:133104‑M1/35‑1 (MQ=255)                                                                    cgcagcgcacggtcatcatcattgcccatcggctttcggcagtacgccatgccgaccgcatcgtggtcatggagcgtggGCAGCTCATCATGAGTCC‑‑CTTGCTCGATGATCTGc                                                                                                                  >  7:133104‑M1/80‑114 (MQ=255)                                                                     tCCTTGAACGCCACACTCATACGGCGGCCCCGAGCTGCAGTTGATGCAGGTAGGCATAGGTGCCCTGTGGATAACCCAGCAGCTCATCATGAGTCC‑‑CTTGCTCGATGATCTGCCCACGCTCCATGACCACGATGCGGTCGGCATGGCg                                                                               <  5:69219/148‑1 (MQ=255)                                                                              gCCACACTCATACGGCGGCCCCGAGCTGCAGTTGATGCAGGTAGGCATAGGTGCCCTGTGGATAATCCAGCAGCTCATCATGAGTCC‑‑CTTGCTCGATGATCTGCCCACGCTCCATGACCACGATGCGGTCGGCATGGCGTACTGCCGa                                                                      >  4:99484/1‑148 (MQ=255)                                                                                cacaCTCATACGGCGGCCCCGAGCTGCAGTTGATGCAGGTAGGCATAGGTGCCCTGTGGATAACCCAGCAGCTCATCATGAGTCC‑‑CTTGCTCGATGATCTGCCCACGCTCCATGACCACGATGCGGTCGGCATGGCGTACTGCCGAAAg                                                                   <  6:158529/149‑1 (MQ=255)                                                                                 acacTCATACGGCGGCCCCGAGCTGCAGTTGATGCAGGTAGGCATAGGTGCCCTGTGGATAACCCAGCAGCTCATCATGAGTCC‑‑CTTGCTCGATGATCTGCCCACGCTCCATGACCACGATGCGGTCGGCATGGCGTACTGCCGAAAGc                                                                  >  6:127022/1‑149 (MQ=255)                                                                                 acacTCATACGGCGGCCCCGAGCTGCAGTTGATGCAGGTAGGCATAGGTGCCCTGTGGATAACCCAGCAGCTCATCATGAGTCC‑‑CTTGCTCGATGATCTGCCCACGCTCCATGACCACGATGCGGTCGGCATGGCGTACTGCCGAAAGc                                                                  >  5:115960/1‑149 (MQ=255)                                                                                     tCATACGGCGGCCCCGAGCTGCAGTTGATGCAGGTAGGCATAGGTGCCCTGTGGATAACCCAGCAGCTCATCATGAGTCC‑‑CTTGCTCGATGATCTGCCCACGCTCCATGACCACGATGCGGTCGGCATGGCGTACTGCCGAAAGCCGAt                                                              >  5:81246/1‑149 (MQ=255)                                                                                       aTACGGCGGCCCCGAGCTGCAGTTGATGCAGGTAGGCATAGGTGCCCTGTGGATAACCCAGCAGCTCATCATGAGTCC‑‑CTTGCTCGATGATCTGCCCACGCTCCATGACCACGACGCGGTCGGCATGGCGTACTGCCGAAAGCCGATgg                                                            <  8:257706/149‑1 (MQ=255)                                                                                        tACGGCGGCCCCGAGCTGCCGTTTATGCAGGTAGGCATAGGGGCCCTGTGGATAACCCACCACCTCATAATTTGTCCCTCTTGCTCGATGATCTGCCCACGCTCCATGACCACGATGCGGTCGGCATGGCGTACTGCCGAAAGCCGATg                                                             <  1:264598/149‑1 (MQ=255)                                                                                        tACGGCGGCCCCGAGCTGCAGTTGATGCAGGTAGGCATAGGTGCCCTGTGGATAACCCAGCAGCTCATCATGAGTCC‑‑CTTGCTCGATGATCTGCCCACGCTCCATGACCACGATGCGGTCGGCATGGCGTACTGCCGAAAGCCGATggg                                                           <  5:127022/149‑1 (MQ=255)                                                                                           ggcggcCCCGAGCTGCAGTTGATGCAGGTAGGCATAGGTGCCCTGTGGATAACCCAGCAGCTCATCATGAGTCC‑‑CTTGCTCGATGATCTGCCCACGCTCCATGACCACGATGCGGTCGGCATGGCGTACTGCCGAAAGCCGATGGGCaa                                                        <  6:81246/149‑1 (MQ=255)                                                                                                ccccGAGCTGCAGTTGATGCAGGTAGGCATAGGTGCCCTGTGGATAACCCAGCAGCTCATCATGAGTCC‑‑CTTGCTCGATGATCTGCCCACGCTCCATGACCACGATGCGGTCGGCATGGCGTACTGCCGAAAGCCGATGGGCAatgat                                                    >  5:199077/1‑148 (MQ=255)                                                                                                   cGAGCTGCAGTTGATGCAGGTAGGCATAGGTGCCCTGTGGATAACCCAGCAGCTCATCATGAGTCC‑‑CTTGCTCGATGATCTGCCCACGCTCCATGACCACGATGCGGTCGGCATGGCGTACTGCCGAAAGCCGATGGGCAatgatgatg                                                <  1:157418/149‑1 (MQ=255)                                                                                                    gAGCTGCAGTTGATGCAGGTAGGCATAGGTGCCCTGTGGATAACCCAGCAGCTCATCATGAGTCC‑‑CTTGCTCGATGATCTGCCCACGCTCCATGACCACGATGCGGTCGGCATGGCGTACTGCCGAAAGCCGATGGGCAAtgatgatga                                               <  2:70607/149‑1 (MQ=255)                                                                                                        tGCAGTTGATGCAGGTAGGCATAGGTGCCCTGTGGATAACCCAGCAGCTCATCATGAGTCC‑‑CTTGCTCGATGATCTGCCCACGCTCCATGCCCACGATGCGGTCGGCATGGCGTACTGCCGAAAGCCGATGGGCAATGATGATTACCGt                                           >  4:237773/1‑149 (MQ=255)                                                                                                            gTTGATGCAGGTAGGCATAGGTGCCCTGTGGATAACCCAGCAGCTCATCATGAGTCC‑‑CTTGCTCGATGATCTGCCCACGCTCCATGACCACGATGCGGTCGGCATGGCGTACTGCCGAAAGCCGATGGGCAATGATGATGACCGtgcgc                                       >  3:143701/1‑149 (MQ=255)                                                                                                                aTGCAGGTAGGCATAGGTGCCCTGTGGATAACCCAGCAGCTCATCATGAGTCC‑‑CTTGCTCGATGATCTGCCCACGCTCCATGACCACGATGCGGTCGGCATGGCGTACTGCCGAAAGCCGATggg                                                           >  5:313392/1‑125 (MQ=255)                                                                                                                aTGCAGGTAGGCATAGGTGCCCTGTGGATAACCCAGCAGCTCATCATGAGTCC‑‑CTTGCTCGATGATCTGCCCACGCTCCATGACCACGATGCGGTCGGCATGGCGTACTGCCGAAAGCCGATggg                                                           <  6:313392/125‑1 (MQ=255)                                                                                                                   cAGGTAGGCATAGGTGCCCTGTGGATAACCCAGCAGCTCATCATGAGTCC‑‑CTTGCTCGATGATCTGCCCACGCTCCATGACCACGATGCGGTCGGCATGGCGTACTGCCGAAAGCCGATGGGCAATGATGATGACCGTGCGCTgcgcg                                 <  6:115960/148‑1 (MQ=255)                                                                                                                      gTAGGCATAGGTGCCCTGTGGATACCCCAGCAGCTCATCATGAGTCC‑‑CTTGCTCGATGATCTGCCCACGCTCCATGACCACGATGCGGTCGGCATGGCGTACTGCCGAAAGCCGATGGGCAATGATGATGACCGTGCGCTGCGCGCaaa                             >  4:101627/1‑149 (MQ=255)                                                                                                                      gTAGGCATAGGTGCCCTGTGGATAACCCAGCAGCTCATCATGAGTCC‑‑CTTGCTCGATGATCTGCCCACGCTCCATGACCACGATGCGGTCGGCATGGCGTACTGCCGAAAGCCGATGGGCAATGATGATGACCGTGCGCTGCGCGCaaa                             <  7:212423/149‑1 (MQ=255)                                                                                                                      gTAGGCATAGGTGCCCTGTGGATAACCCAGCAGCTCATCATGAGTCC‑‑CTTGCTCGATGATCTGCCCACGCTCCATGACCACGATGCGGTCGGCATGGCGTACTGCCGAAAGCCGATGGGCAATGATGATGACCGAGCGCTGCGCGCaaa                             >  6:318030/1‑149 (MQ=255)                                                                                                                      gTAGGCATAGGGGCCCTGTGGATAACCCAGCAGCTCATCATGAGTCC‑‑CTTGCTCGATGATCTGCCGACGCTCCCTGACCACGATGCGGTCGGCATGGCGTACTGCCGAAAGCCGATGGGCAATGATGATGACCGTGCGCTGCGCGCaaa                             <  7:208534/149‑1 (MQ=255)                                                                                                                              aGGTGCCCTGTGGATAACCCAGCAGCTCATCATGAGTCC‑‑CTTGCTCGATGATCTGCCCACGCTCCATGACCACGATGCGGTCGGCATGGCGTACTGCCGAAAGCCGATGGGCAATGATGATGACCGTGCGCTGCGCGCAAATCCgcgc                      >  7:221305/1‑148 (MQ=255)                                                                                                                                 tGCCCTGTGGATAACCCAGCAGCTCATCATGAGTCC‑‑CTTGCTCGATGATCTGCCCACGCTCCATGACCACGATGCGGTCGGCATGGCGTACTGCCGAAAGCCGATGGGCAATGATGATGACCGTGCGCTGCGCGCAAATCCGCGCCATg                  <  5:318030/149‑1 (MQ=255)                                                                                                                                          gATAACCCAGCAGCTCATCATGAGTCC‑‑CTTGCTCGATGATCTGCCCACGCTCCATGACCACGATGCGGTCGGCATGGCGTACTGCCGAAAGCCGATGGGCAATGATGATGACCGTGCGCTGCGCGCAAATCCGCGCCATGTTctgctg          >  1:33938/1‑148 (MQ=255)                                                                                                                                                ccAGCAGCTCATCATGAGTCC‑‑CTTGCTCGATGATCTGCCCACGCTCCATGACCACGATGCGGTCGGCATGGCGTACTGCCGAAAGCCGATGGGCAATGATGATGACCGTGCGCTGCGCGCAAATCcgc                        <  5:180536/128‑1 (MQ=255)                                                                                                                                                ccAGCAGCTCATCATGAGTCC‑‑CTTGCTCGATGATCTGCCCACGCTCCATGACCACGATGCGGTCGGCATGGCGTACTGCCGAAAGCCGATGGGCAATGATGATGACCGTGCGCTGCGCGCAAATCcgc                        >  6:180536/1‑128 (MQ=255)                                                                                                                                                ccAGCAGCTCATCATGAGTCC‑‑CTTGCTCGATGATCTGCCCACGCTCCATGACCACGATGCGGTCGGCATGGCGTACTGCCGAAAGCCGATGGGCAATGATGATGACCGTGCGCTGCGCGCAAATCCGCGCCATGTTCTGCTGGATGATc   >  3:268374/1‑149 (MQ=255)                                                                                                                                                ccAGCAGCTCATCATGAGTCC‑‑CTTGCTCGATGATCTGCCCACGCTCCATGACCACGATGCGGTCGGCATGGCGTACTGCCGAAAGCCGATGGGCAATGATGATGACCGTGCGCTGCGCGCAAATCCGCGCCATGTTCTGCTGGATGATc   >  6:211510/1‑149 (MQ=255)                                                                                                                                                ccAGCAGCTCATCATGAGTCC‑‑CTTGCTCGATGATCTGCCCACGCTCCATGACCACGATGCGGTCGGCATGGCGTACTGCCGAAAGCCGATGGGCAATGATGATGACCGTGCGCTGCGCGCAAATCCGCGCCATGTTCTGCTGGATGATc   >  3:263943/1‑149 (MQ=255)                                                                                                                                                 cagcagCTCATCATGAGTCC‑‑CTTGCTCGATGATCTGCCCACGCTCCATGACCACGATGCGGTCGGCATGGCGTACTGCCGAAAGCCGATGGGCAATGATGATGCCCGTGCGCTGCGCGCAAATCCGCGCCATGTTCTGCTGGATGATcc  >  6:314526/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                     CGGGGCCGTCCATGCTCCGGCGCTTTCGCCATGCCGTCCTCCACGCATCCCGGTAGCGCTCGGCAAGGTCCTTGAACGCCACACTCATACGGCGGCCCCGAGCTGCAGTTGATGCAGGTAGGCATAGGTGCCCTGTGGATAACCCAGCAGCTCATCATGAGTCC‑‑CTTGCTCGATGATCTGCCCACGCTCCATGACCACGATGCGGTCGGCATGGCGTACTGCCGAAAGCCGATGGGCAATGATGATGACCGTGCGCTGCGCGCAAATCCGCGCCATGTTCTGCTGGATGATCC  >  NC_002947/5605859‑5606151

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.