New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5666565	64 (1.230)	3 (0.060)	3/254	NT	4.3%	coding (579/1236 nt)	nhaP	NhaP‑type Na+(K+)/H+ antiporter
	?	NC_002947	= 5666609	74 (1.490)					coding (623/1236 nt)	nhaP	NhaP‑type Na+(K+)/H+ antiporter
Rejected: Frequency below/above cutoff threshold.

ACCCGATTGCCGTGCTTGGCGCGCTGCGTACTGCCAATGCGCCCAAACCGCTTAAAACCACCATCGTCGGCGAGTCACTGTTCAACGACGGCACGGCAGTCGTGGTATTCACCGTGTTGCTGGGCATCATCCAGCTGGGTGAAACACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5666417‑5666565 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acaccgCCAATGGCCTCGCGGGCGAACAGGATCGCCGTGTCGGCCATGCTCGGTGTTTCACCCAGCTGGATGATGCCCAGCAACACGGTGAATACCACGACTGCCGTGCCGTCGTTGAACAGTGACTCGCCGACGATGGTGGTTTTAAGCGGT  <  NC_002947/5666609‑5666463                                                                                                                                                                                                                                                                                                          ACCCGATTGCCGTGCTTGGCGCGCTGCGTACTGCCAATGCGCCCAAACCGCTTAAAACCACCATCGTCGGCGAGTCACTGTTCAACGACGGCACGGCAGTCGTGGTATTCACCGTGTTGCTGGGCATCATCCAGCTGGGTGAAACACC                                                                                                                                                      >  7:116190/1‑148                                             AAACCGCTTAAAACCACCATCGTCGGCAAGTCACTGTTCAACGACGGCACGGCAGTCGTGGTATTCACCGTGTTGCTGGGCATCATCCAGCTGGGTGAAACACCGCCAATGGCCTCGCGGGCGAACAGGATCGCCGTGTCGGCCATGCT                                                                                                         >  7:33945/1‑149                                                   CTTAAAACCACCATCGTCGGCGAGTCACTGTTCAACGACGGCACGGCAGTCGTGGTATTCACCGTGTTGCTGGGCATCATCCAGCTGGGTGAAACACCGCCAATGGCCTCGCGGGCGAACAGGATCGCCGTGTCGGCCATGCTCGGTGT                                                                                                   <  1:190878/149‑1                                                      AAAACCACCATCGTCGGCAAGTCACTGTTCAACGACGGCACGGCAGTCGTGGTATTCACCGTGTTGCTGGGCATCATCCAGCTGGGTGAAACACCGCCAATGGCCTCGCGGGCGAACAGGATCGCCGTGTCGGCCATGCTCGGTGTT                                                                                                  <  8:33945/147‑1                                                                                                                                                ACACCGCCAATGGCCTCGCGGGCGAACAGGATCGCCGTGTCGGCCATGCTCGGTGTTTCACCCAGCTGGATGATGCCCAGCAACACGGTGAATACCACGACTGCC                                                  <  5:309277/105‑1                                                                                                                                                ACACCGCCAATGGCCTCGCGGGCGAACAGGATCGCCGTGTCGGCCATGCTCGGTGTTTCACCCAGCTGGATGATGCCCAGCAACACGGTGAATACCACGACTGCC                                                  >  6:309277/1‑105                                                                                                                                                    CGCCAATGGCGTCGCGGGCGAACAGGATCGCCGTGTCGGCCATGCTCGGTGTTTCACCCAGCTGGATGATGCCCAGCAACACGGTGAATACCACGACTGCCGTGCCGTCGTTGAACAGTGACTCGCCGACGATGGTGGTTTTAAGCGGT  <  8:47229/149‑1                                                                                                                                                                                                                                                                                                          ACCCGATTGCCGTGCTTGGCGCGCTGCGTACTGCCAATGCGCCCAAACCGCTTAAAACCACCATCGTCGGCGAGTCACTGTTCAACGACGGCACGGCAGTCGTGGTATTCACCGTGTTGCTGGGCATCATCCAGCTGGGTGAAACACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5666417‑5666565 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acaccgCCAATGGCCTCGCGGGCGAACAGGATCGCCGTGTCGGCCATGCTCGGTGTTTCACCCAGCTGGATGATGCCCAGCAACACGGTGAATACCACGACTGCCGTGCCGTCGTTGAACAGTGACTCGCCGACGATGGTGGTTTTAAGCGGT  <  NC_002947/5666609‑5666463

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.