New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5718150 =	68 (1.310)	5 (0.100)	4/248	NT	7.8%	coding (849/1917 nt)	PP_5020	methyl‑accepting chemotaxis protein
	?	NC_002947	5718206 =	55 (1.130)					coding (905/1917 nt)	PP_5020	methyl‑accepting chemotaxis protein

CTGCAGGCTCTGGGTCAGGTCTCCACTGGCCACACGCTCTGCGGCGCGCAGTGTTTGGCGCAGCGGAATGATGATCTGCCGGGTAATGGCCCAGGCGGCCAGCAGGCCAAGGGCCAGTGCCAGCACGGTGGCAACCGTGAGCAGTGTTTTGGCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5718306‑5718150 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttggcctgcTGGCCGCCTGGGCCATTACCCGGCAGATCATCATTCCGCTGCGCCAAACACTGCGCGCCGCAGAGCGTGTGGCCAGTGGAGACCTGACCCAGAGCCTGCAGGTACAACGCCGCGACGAACTGGGCCAATTGCAGGCCAGCATGCATCG  >  NC_002947/5718206‑5718353                                                                                                                                                                                                                                                                                                                   CTGCAGGCTCTGGGTCAGGTCTCCACTGGCCACACGCTCTGCGGCGCGCAGTGTTTGGCGCAGCGGAATGATGATCTGCCGGGTAATGGCCCAGGCGGCCAGCAGGCCAAGGGCCAGTGCCAGCACGGTGGCAACCGTGAGCAGTGTTT                                                                                                                                                              <  5:155946/149‑1    CAGTCTCTGGGTCAGGTCTCCACTGGCCACACGCTCTGCGGCGCGCAGTGTTTGGCGCAGCGGAATGATGATCTGCCGGGTAATGGCCCAGGCGGCCAGCAGGCCAAGGGTCAGTGCCAGCACTGTGGCAACCGTGAGCAGTGTTTTG                                                                                                                                                            <  7:200564/148‑1    CAGGCTCTGGGTCAGGTCTCCACTGGCCACACGCTCTGCGGCGCGCAGTGTTTGGCGCAGCGGAATGATGATCTGCCGGGTAATGGCCCAGGCGGCCAGCAGGCCAAGGGCCAGTGCCAGCACGGTGGCAACCGTGAGCAGTGTTTTGG                                                                                                                                                           >  1:82861/1‑149    CAGGCTCTGGGTCAGGTCTCCACTGGCCACACGCTCTGCGGCGCGCAGTGTTTGGCGCAGCGGAATGATGATCTGCCGGGTAATGG‑CCAGGCGGCCAGCAGGCCAAGGGCCAGTGCCAGCACGGTGGCAACCGTGAGCAGTGTTTTG                                                                                                                                                            <  7:290279/147‑1       GCTCTGGGTCAGGTCTCCACTGGCCACACGCTCTGCGGCGCGCAGTGTTTGGCGCAGCGGAATGATGATCTGCCGGGTAATGGCCCAGGCGGCCAGCAGGCCAAGGGCCAGTGCCAGCACGGTGGCAACCGTGAGCAGTGTTTTGGCCT                                                                                                                                                        <  3:228898/149‑1       GCTCTGGGTCAGGTCTCCACTGGCCACACGCTCTGCGGCGCGCAGTGTTTGGCGCAGCGGAATGATGATCTGCCGGGTAATGGCCCAGGCGGCCAGCAGGCCAAGGGCCAGTGCCAGCACGGTGGCAACCGTGAGCAGTGTTTTGGCCT                                                                                                                                                        >  8:262615/1‑149                                                                                                  GCCAGCAGGCCAAGGGCCAGTGCCAGCACGGTGGCAACCGTGAGCAGTGTTTTGGCCTGCTGGCCGCCTGGGCCATTACCCGGCAGATCATCATTCCGCTGCGCCAAACACTGCGCGCCGCAGAGCGTGTGGCCAGTGGAGACCTGACC                                                             >  6:211775/1‑149                                                                                                    CAGCAGGCCAAGGGCCAGTGCCAGCACGGTGGCAACCGTGAGCAGTGTTTTGGCCTGCTGGCCGCCTGGGCCATTACCCGGCAGATCATCATTCCGCTGCGCCAAACACTGCGCGCCGCAGAGCGTGTGGCCAGTGGAGACCTGACC                                                             >  5:34388/1‑147                                                                                                    CAGCAGGCCAAGGGCCAGTGCCAGCACGGTGGCAACCGTGAGCAGTGTTTTGGCCTGCTGGCCGCCTGGGCCATTACCCGGCAGATCATCATTCCGCTGCGCCAAACACTGCGCGCCGCAGAGCGTGTGGCCAGTGGAGAC                                                                   >  4:29606/1‑141                                                                                                    CAGCAGGCCAAGGGCCAGTGCCAGCACGGTGGCAACCGTGAGCAGTGTTTTGGCCTGCTGGCCGCCTGGGCCATTACCCGGCAGATCATCATTCCGCTGCGCCAAACACTGCGCGCCGCAGAGCGTGTGGCCAGTGGAGAC                                                                   <  3:29606/141‑1                                                                                                              AGGGCCAGTGCCAGCACGGTGGCAACCGTGAGCAGTGTTTTGGCCTGCTGGCCGCCTGGGCCATTACCCGGCAGATCATCATTCCGCTGCGCCAAACACTGCGCGCCGCAGAGCGTGTGGCCAGTGGAGACCTGACCCAGAGCCTGCAG                                                 <  6:34388/149‑1                                                                                                                                                        GCCTGCTGGCCGCCTGGGCCATTACCCGGCAGATCATCATTCCGCTGCGCCAAACACTGCGCGCCGCAGAGCGTGTGGCCAGTGGAGACCTGACCCAGAGCCTGCAGGTACAACGCCGCGACGAACTGGGCCAATTGCAGGCCAGCATG       <  6:155946/149‑1                                                                                                                                                          CTGCTGGCCGCCTGGGCCATTACCCGGCAGATCATCATTCCGCTGCGCCAAACACTGCGCGCCGCAGAGCGTGTGGCCAGTGGAGACCTGACCCAGAGCCTGCAGGTACAACGCCGCGACGAACTGGGCCAATTGCAGGCCAGCATGCA     >  7:132435/1‑149                                                                                                                                                             CTGGCCGCCTGGGCCATTACCCGGCAGATCATCATTCCGCTGCGCCAAACACTGCGCGCCGCAGAGCGTGTGGCCAGTGGAGACCTGACCCAGAGCCTGCAGGTACAACGCCGCGACGAACTGGGCCAATTGCAGGCCAGCATGCATCG  <  6:290995/149‑1                                                                                                                                                             CTGGCCGCCTGGGCCATTACCCGGCAGATCATCATTCCGCTGCGCCAAACACTGCGCGCCGCAGAGCGTGTGGCCAGTGGAGACCTGACCCAGAGCCTGCAGGTACAACGCCGCGACGAACTGGGCCAATTGCAGGCCAGCATGCATCG  >  8:287398/1‑149                                                                                                                                                             CTGGCCGCCTGGGCCATTACCCGGCAGATCATCATTCCGCTGCGCCAAACACTGCGCGCCGCAGAGCGTGTGGCCAGTGGAGACCTGACCCAGAGCCTGCAGGTACAACGCCGCGACGAACTGGGCCAATTGCAGGCCAGCATGCATC   <  7:290408/148‑1                                                                                                                                                             CTGGCCGCCTGGGCCATTACCCGGCAGATCATCATTCCGCTGCGCCAAACACTGCGCGCCGCAGAGCGTGTGGCCAGTGGAGACCTGACCCAGAGCCTGCAGGTACAACGCCGCGACGAACTGGGCCAATTGCAGGCCAGCATGCAT    <  5:174631/147‑1                                                                                                                                                                                                                                                                                                                   CTGCAGGCTCTGGGTCAGGTCTCCACTGGCCACACGCTCTGCGGCGCGCAGTGTTTGGCGCAGCGGAATGATGATCTGCCGGGTAATGGCCCAGGCGGCCAGCAGGCCAAGGGCCAGTGCCAGCACGGTGGCAACCGTGAGCAGTGTTTTGGCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5718306‑5718150 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttggcctgcTGGCCGCCTGGGCCATTACCCGGCAGATCATCATTCCGCTGCGCCAAACACTGCGCGCCGCAGAGCGTGTGGCCAGTGGAGACCTGACCCAGAGCCTGCAGGTACAACGCCGCGACGAACTGGGCCAATTGCAGGCCAGCATGCATCG  >  NC_002947/5718206‑5718353

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.