| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5823215 = | 49 (0.940) | 3 (0.060) | 3/258 | NT | 5.1% | coding (151/1176 nt) | yggW | coproporphyrinogen/heterocyclic compound oxidase |
| ? | NC_002947 | 5823263 = | 64 (1.270) | coding (199/1176 nt) | yggW | coproporphyrinogen/heterocyclic compound oxidase | |||||
AATACGTTGCTCTACGCCACGCAGTAGCCGGCCAAGGGCGCTGGCACTGAACAGGCTTGGCGTACCGCCACCGAAGAAGATCGAGCTGATCGGGCGACCTTGTACGGCAGCCAGCTCCTGGTCGAGGTCGTCGAGCAGGGCTGTGACGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5823364‑5823215‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtaCAAGGTCGCCCGATCAGCTCGATCTTCTTCGGTGGCGGTACGCCAAGCCTGTTCAGTGCCAGCGCCCTTGGCCGGCTACTGCGTGGCGTAGAGCAACGTATTCCGTTCGCGCCAGACATCGAGATCACCCTCGAAGCCAACCCGGG > NC_002947/5823263‑5823408 AATACGTTGCTCTACGCCACGCAGTAGCCGGCCAAGGGCGCTGGCACTGAACAGGCTTGGCGTACCGCCACCGAAGAAGATCGAGCTGATCGGGCGACCTTGTACGGCAGCCAGCTCCTGGTCGAGGTCGTCGAGCAGGGCTGTGACG > 7:120275/1‑148 ATACGTTGCTCTACGCCACGCAGTAGCCGGCCAAGGGCGCTGGCACGGAACAGGCTTGGCGTACCGCCACCGAAGCAGATCGAGCTGATCGGGCGACCTTGTACGGCAGCCAGCTCCTGGTCGAGGTCGGCGAGCAGGGCTGTGACGTA < 3:6237/149‑1 GGGCGCTGGCACTGAACAGGCTTGGCGTACCGCCACCGAAGAAGATCGAGCTGATCGGGCGACCTTGTACGGCAGCCAGCTCCTGGTCGAGGTCGTCGAGCAGGGCTGTGACGTA < 5:14791/115‑1 GGGCGCTGGCACTGAACAGGCTTGGCGTACCGCCACCGAAGAAGATCGAGCTGATCGGGCGACCTTGTACGGCAGCCAGCTCCTGGTCGAGGTCGTCGAGCAGGGCTGTGACGTA > 6:14791/1‑115 GACCTTGTACGGCAGCCAGCTCCTGGTCGAGGTCGTCGAGCAGGGCTGTGACGTACAAGGTCGCCCGATCAGCTCGATCTTCTTCGGTGGCGGTACGCCAAGCCTGTTCAGTGCCAGCGCCCTTGGCCGGCTACTGCGTGGCGTAGA > 3:300638/1‑147 GACCTTGTACGGCAGCCAGCTCCTGGTCGAGGTCGTCGAGCAGGGCTGTGACGTACAAGGTCGCCCGATCAGCTCGATCTTCTTCGGTGGCGGTACGCCAAGCCTGTTCAGTGCCAGCGCCCTTGGCCGGCTACTGCGTGGCGTAGA < 4:300638/147‑1 CTTGTACGGCAGCCAGCTCCTGGTCGAGGTCGTCGAGCAGGGCTGTGACGTACAAGGTCGCCCGATCAGCTCGATCTTCTTCGGTGGCGGTACGCCAAGCCTGTTCAGTGCCAGCGCCCTTGGCCGGCTACTGCGTGGCGTAGAGCAAC > 3:264427/1‑149 GTACAAGGTCGCCCGATCAGCTCGATCTTCTTCGGTGGCGGTACGCCAAGCCTGTTCAGTGCCAGCGCCCTTGGCCGGCTACTGCGTGGCGTAGAGCAACGTATTCCGTTCGCGCCAGACATCGAGATCACCCTCGAAGCCAACCCGGG < 1:247586/149‑1 AATACGTTGCTCTACGCCACGCAGTAGCCGGCCAAGGGCGCTGGCACTGAACAGGCTTGGCGTACCGCCACCGAAGAAGATCGAGCTGATCGGGCGACCTTGTACGGCAGCCAGCTCCTGGTCGAGGTCGTCGAGCAGGGCTGTGACGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5823364‑5823215‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtaCAAGGTCGCCCGATCAGCTCGATCTTCTTCGGTGGCGGTACGCCAAGCCTGTTCAGTGCCAGCGCCCTTGGCCGGCTACTGCGTGGCGTAGAGCAACGTATTCCGTTCGCGCCAGACATCGAGATCACCCTCGAAGCCAACCCGGG > NC_002947/5823263‑5823408 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |