New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 583830652 (1.000)4 (0.080) 3/252 NT 7.6% coding (1107/1371 nt) PP_5116 hypothetical protein
?NC_002947 = 5838327 48 (0.970)coding (1128/1371 nt) PP_5116 hypothetical protein

GACCTACGGCGTGCACACGCATGTATTGCCATTGAGTGCAGGCGGCCTGTTCACCGTGGAATGGGAGGTTGCGCCCCAGCATGTGCAGGGCACGCAGGCACTGGTAGAAACCCTGCTGCAGGCGTTCATCGACGAAGGGCCCACCCAGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5838156‑5838306
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagctgTTTGCGTGCCAGTTGCAGCTCCAGCTGGGTGGGCCCTTCGTCGATGAACGCCTGCAGCAGGGTTTCTACCAGTGCCTGCGTGCCCTGCACATGCTGGGGCGCAACCTCCCATTCCACGGTGAACAGGCCGCCTGCACTCAATGGCAA  <  NC_002947/5838327‑5838181
                                                                                                                                                                                                                                                                                                          
GACCTACGGCGTGCACACGCATGTATTGCCATTGAGTGCAGGCGGCCTGTTCACCGTGGAATGGGAGGTTGCGCCCCAGCATGTGCAGGGCACGCAGGCACTGGTAGAAACCCTGCTGCAGGCGTTCATCGACGAAGGGCCCACCCAGC                                                                                                                                                       >  5:121609/1‑149
             CACACGCATGTATTGCCATTGAGTGCAGGCGGCCTGTTCACCGTGGAATGGGAGGTTGCGCCCCAGCATGTGCAGGGCACGCAGGCACTGGTAGAAACCCTGCTGCAGGCGTTCATCGACGAAGGGCCCACCCAG                                                                                                                                                        <  7:304816/135‑1
             CACACGCATGTATTGCCATTGAGTGCAGGCGGCCTGTTCACCGTGGAATGGGAGGTTGCGCCCCAGCATGTGCAGGGCACGCAGGCACTGGTAGAAACCCTGCTGCAGGCGTTCATCGACGAAGGGCCCACCCAG                                                                                                                                                        >  8:304816/1‑135
                                                             TGGGAGGTTGCGCCCCAGCATGTGCAGGGCACGCAGGCACTGGTAGAAACCCTGCTGCAGGCGTTCATCGACGAAGGGCCCACCCAGCTGTTTGCGTGCCAGTTGCAGCTCCAGCTGGGT                                                                                                                       >  3:162238/1‑120
                                                             TGGGAGGTTGCGCCCCAGCATGTGCAGGGCACGCAGGCACTGGTAGAAACCCTGCTGCAGGCGTTCATCGACGAAGGGCCCACCCAGCTGTTTGCGTGCCAGTTGCAGCTCCAGCTGGGT                                                                                                                       <  4:162238/120‑1
                                                                                           ACGCAGGCACTGGTAGAAACCCTGCTGCAGGCGTTCATCGACGAAGGGCCCACCC                                                                                                                                                          >  2:178898/1‑55
                                                                                                             gCCCTGCTGCAGGCGTTCATCGACGAAGGGCCCACCCAGCTGTTTGCGTGCCAGTTGCAGCTCCAGCTGG                                                                                                                         <  3:138722/69‑1
                                                                                                             gCCCTGCTGCAGGCGTTCATCGACGAAGGGCCCACCCAGCTGTTTGCGTGCCAGTTGCAGCTCCAGCTGG                                                                                                                         >  4:138722/2‑70
                                                                                                                                                CCAGCTGTTTGCGTGCCAGTTGCAGCTCCAGCTGGGTGGGCCCTTCGTCGATGAACGCCTGCAGCAGGGTTTCTACCAGTGCCTGCGTGCCCTGCACATGCTGGGGCGCAACCTCCCATTCCACGGTGAACAGGCCGCCTGCACTCAAT       >  6:121609/1‑149
                                                                                                                                                 CAGCTGTTTGCGTGCCAGTTGCAGCTCCAGCTGGGTGGGCCCTTCGTCGATGAACGCCTGCAGCAGGGTTTCTACCAGTGCCTGCGTGCCCTGCACATGCTGGGGCGCAACCTCCCATTCCACGGTGAACAGGCCGCCTGCACTCAATG      >  5:9119/1‑149
                                                                                                                                                      GTTTGCGTGCCAGTTGCAGCTCCAGCTGGGTGGGCCCTTCGTCGATGAACGCCTGCAGCAGGGTTTCTACCAGTGCCTGCGTGCCCTGCACATGCTGGGGCGCAACCTCCCATTCCACGGTGAACAGGCCGCCTGCACTCAATGGCAA  >  6:147849/1‑148
                                                                                                                                                                                                                                                                                                          
GACCTACGGCGTGCACACGCATGTATTGCCATTGAGTGCAGGCGGCCTGTTCACCGTGGAATGGGAGGTTGCGCCCCAGCATGTGCAGGGCACGCAGGCACTGGTAGAAACCCTGCTGCAGGCGTTCATCGACGAAGGGCCCACCCAGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5838156‑5838306
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagctgTTTGCGTGCCAGTTGCAGCTCCAGCTGGGTGGGCCCTTCGTCGATGAACGCCTGCAGCAGGGTTTCTACCAGTGCCTGCGTGCCCTGCACATGCTGGGGCGCAACCTCCCATTCCACGGTGAACAGGCCGCCTGCACTCAATGGCAA  <  NC_002947/5838327‑5838181

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.