New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5838306	52 (1.000)	4 (0.080)	3/252	NT	7.6%	coding (1107/1371 nt)	PP_5116	hypothetical protein
	?	NC_002947	= 5838327	48 (0.970)					coding (1128/1371 nt)	PP_5116	hypothetical protein

ATTGCCATTGAGTGCAGGCGGCCTGTTCACCGTGGAATGGGAGGTTGCGCCCCAGCATGTGCAGGGCACGCAGGCACTGGTAGAAACCCTGCTGCAGGCGTTCATCGACGAAGGGCCCACCCAGCTGGAGCTGCAACTGGCACGCAAACAGCTGGAAGGGCAGTTGCTGCGAGGGATCGCGCAGAACAGGCAACTCGCAACACTGCTGACGGAAGTAACCCATCAG‑CGGCAACCTGCCGATCATCTCGACACGTACAGCGCCCGTATTGCCGAACTTACCCC  >  NC_002947/5838180‑5838461                                                                                                                                                    |                                                                                                                                        aTTGCCATTGAGTGCAGGCGGCCTGTTCACCGTGGAATGGGAGGTTGCGCCCCAGCATGTGCAGGGCACGCAGGCACTGGTAGAAACCCTGCTGCAGGCGTTCATCGACGAAGGGCCCACCCAGCTGGAGCTGCAACTGGCACGCaaa                                                                                                                                         >  5:314279/1‑148 (MQ=255)  ttGCCATTGAGTGCAGGCGGCCTGTTCACCGTGGAATGGGAGGTTGCGCCCCAGCATGTGCAGGGCACGCAGGCACTGGTAGAAACCCTGCTGCAGGCGTTCATCGACGAAGGGCCCACCCAGCTGGAGCTGCAACTGGCACGCAAAc                                                                                                                                        >  6:147849‑M2/1‑147 (MQ=255)      cATTGAGTGCAGGCGGCCTGTTCACCGTGGAATGGGAGGTTGCGCCCCAGCATGTGCAGGGCACGCAGGCACTGGTAGAAACCCTGCTGCAGGCGTTCATCGACGAAGGGCCCACCCAGCTGGAGCTGCAACTGGCACGCAAAcagctg                                                                                                                                   >  5:9119‑M2/1‑143 (MQ=255)       aTTGAGTGCAGGCGGCCTGTTCACCGTGGAATGGGAGGTTGCGCCCCAGCATGTGCAGGGCACGCAGGCACTGGTAGAAACCCTGCTGCAGGCGTTCATCGACGAAGGGCCCACCCAGCTGGAGCTGCAACTGGCACGCAAAcagctgg                                                                                                                                  >  6:121609‑M2/1‑142 (MQ=255)           aGTGCAGGCGGCCTGTTCACCGTGGAATGGGAGGTTGCGCCCCAGCATGTGCAGGGCACGCAGGCACTGGTAGAAACCCTGCTGCAGGCGTTCATCGACGAAGGGCCCACCCAGCTGGAGCTGCAACTGGCACGCAAACAGCTGGAAgg                                                                                                                              >  4:28127/1‑149 (MQ=255)            gTGCAGGCGGCCTGTTCACCGTGGAATGGGAGGTTGCGCCCCAGCATGTGCAGGGCACGCAGGCACTGGTAGAAACCCTGCTGCAGGCGTTCATCGACGAAGGGCCCACCCAGCTGGAGCTGCAACTGGCACGCAAACAGCTGGAAggg                                                                                                                             <  8:305533/149‑1 (MQ=255)             tGCAGGCGGCCTGTTCACCGTGGAATGGGAGGTTGCGCCCCAGCATGTGCAGGGCACGCAGGCACTGGTAGAAACCCTGCTGCAGGCGTTCATCGACGAAGGGCCCACCCAGCTGGAGCTGCAACTGGCACACAAACAGCTGGAAggg                                                                                                                             >  5:80218/1‑148 (MQ=255)                    ggcCTGTTCACCGTGGAATGGGAGGTTGCGCCCCAGCATGTGCAGGGCACGCAGGCACTGGTAGAAACCCTGCTGCAGGCGTTCATCGACGAAGGGCCCACCCAGCTGGAGCTGCAACTGGCACGCAAACAGCTGGAAGGGCAGTtgct                                                                                                                     <  8:137280/149‑1 (MQ=255)                       cTGTTCACCGTGGAATGGGAGGTTGCGCCCCAGCATGTGCAGGGCACGCAGGCACTGGTAGAAACCCTGCTGCAGTCGTTCATCGACGAAGGGCCCACCCAGCTGGAGCTGCAACTGGCACGCAAACAGCTGGAAGGGCAGTtgctgc                                                                                                                   >  1:263340/1‑148 (MQ=255)                        tGTTCACCGTGGAATGGGAGGTTGCGCCCCAGCATGTGCAGGGCACGCAGGCACTGGTAGAAACCCTGCTGCAGGCGTTCATCGACGAAGGGCCCACCCAGCTGGAGCTGCAACTGGCACGCAAACAGCTGGAAGGGCAGTtgctgc                                                                                                                   >  4:303449/1‑147 (MQ=255)                               cGTGGAATGGGAGGTTGCGCCCCAGCATGTGCAGGGCACGCAGGCACTGGTAGAAACCCTGCTGCAGGCGTTCATCCACGAAGGGCCCACCCAGCTGGAGCTGCAACTGGCACGCAAACAGCTCGAAGGGCAGTTGCTGCGAGGGATcg                                                                                                          >  6:22438/1‑149 (MQ=255)                                 tGGAATGGGAGGTTGCGCCCCAGCATGTGCAGGGCACGCAGGCACTGGTAGAAACCCTGCTGCAGGCGTTCATCGACGAAGGGCCCACCCAGCTGGAGCTGCAACTGGCACGCAAACAGCTGGAAGGGCAGTTGCTGCGAGGGATcgcg                                                                                                        <  3:28127/149‑1 (MQ=255)                                        ggAGGTTGCGCCCCAGCATGTGCAGGGCACGCAGGCACTGGTAGAAACCCTGCTGCAGGCGTTCATCGACGAAGGGCCCACCCAGCTGGAGCTGCAACTGGCACGCAAACAGCTGGAAGGGCAGTTGCTGCGAGGGATCGCGCAGaa                                                                                                   >  4:22945/1‑147 (MQ=255)                                                   cccAGCATGTGCAGGGCACGCAGGCACTGGTAGAAACCCTGCTGCAGGCGTTCATCGACGAAGGGCCCACCCAGCTGGAGCTGCAACTGGCACGCAAACAGCTGGAAGGGCAGTTGCTGCGAGGGATcgcg                                                                                                        <  5:95953/131‑1 (MQ=255)                                                   cccAGCATGTGCAGGGCACGCAGGCACTGGTAGAAACCCTGCTGCAGGCGTTCATCGACGAAGGGCCCACCCAGCTGGAGCTGCAACTGGCACGCAAACAGCTGGAAGGGCAGTTGCTGCGAGGGATcgcg                                                                                                        >  6:95953/1‑131 (MQ=255)                                                   cccAGCATGTGCAGGGCACGCAGGCACTGGTAGAAACCCTGCTGCAGGCGTTCATCGACGAAGGGCCCACCCAGCTGGAGCTGCAACTGGCACGCAAACAGCTGGAAGGGCAGTTGCTGCGAGGGATCGCGCAGaa                                                                                                   >  2:51272/1‑136 (MQ=255)                                                   cccAGCATGTGCAGGGCACGCAGGCACTGGTAGAAACCCTGCTGCAGGCGTTCATCGACGAAGGGCCCACCCAGCTGGAGCTGCAACTGGCACGCAAACAGCTGGAAGGGCAGTTGCTGCGAGGGATCGCGCAGaa                                                                                                   <  1:51272/136‑1 (MQ=255)                                                     cAGCATGTGCAGGGCACGCAGGCACTGGTAGAAACCCTGCTGCAGGCGTTCATCGACGAAGGGCCCACCCAGCTGGAGCTGCAACTGGCACGCAAACAGCTGGAAGGGCAGTTGCTGCGAGGGATCGCGCAGAACAGGCAACTCGCaa                                                                                     >  4:107479/1‑148 (MQ=255)                                                        cATGTGCAGGGCACGCAGGCACTGGTAGAAACCCTGCTGCAGGCGTTCATCGACGAAGGGCCCACCCAGCTGGAGCTGCAACTGGCACGCAAACAGCTGGAAGGGCAGTTGCTGCGAGGGATCGCGCAGAACAGGCAACTCGCAACAct                                                                                 >  8:238832/1‑149 (MQ=255)                                                             gCAGGGCACGCAGGCACTGGTAGAAACCCTGCTGCAGGCGTTCATCGACGAAGGGCCCACCCAGCTGGAGCTGCAACTGGCACGCAAACAGCTGGAAGGGCAGTTGCTGCGAGGGATCGCGCAGAACAGGCAACTCGCAACActg                                                                                <  6:269385/145‑1 (MQ=255)                                                             gCAGGGCACGCAGGCACTGGTAGAAACCCTGCTGCAGGCGTTCATCGACGAAGGGCCCACCCAGCTGGAGCTGCAACTGGCACGCAAACAGCTGGAAGGGCAGTTGCTGCGAGGGATCGCGCAGAACAGGCAACTCGCAACActg                                                                                >  5:269385/1‑145 (MQ=255)                                                             gCAGGGCACGCAGGCACTGGTAGAAACCCTGCTGCAGGCGTTCATCGACGAAGGGCCCACCCAGCTGGAGCTGCAACTGGCACGCAAACAGCTGGAAGGGCAGTTGCTGCGAGGGATCGCGCAGAACAGGCAACTCGCAACACTGCTGa                                                                            >  4:318755/1‑149 (MQ=255)                                                             gCAGGGCACGCAGGCACTGGTAGAAACCCTGCAGCAGGCGTTCATCGACGAAGGGCCCACCCAGCTGGAGCTGCAACTGGCACGCAAACAGCTGGAAGGGCAGTTGCTGCGAGGGATCGCGCAGAACAGGCAACTCGCAACACTGCTGa                                                                            >  1:204688/1‑149 (MQ=255)                                                                gggCACGCAGGCACTGGTAGAAACCCTGCTGCAGGCGTTCATCGACGAAGGGCCCACCCAGCTGGAGCTGCAACTGGCACGCAAACAGCTGGAAGGGCAGTTGCTGCGAGGGATCGCGCAGAACAGGCAACTCGCAACACTGCTGACgg                                                                         <  5:22438/149‑1 (MQ=255)                                                                    aCGCAGGCACTGGTAGAAACCCTGCTGCAGGCGTTCATCGACGAAGGGCCCACCCAGCTGGAGCTGCAACTGGCACGCAAACAGCTGGAAGGGCAGTTGCTGCGAGGGATCGCGCAGAACAGGCAACTCGCAACACTGCTGACGGAAg                                                                      >  8:220980/1‑148 (MQ=255)                                                                        aGGCACTGGTAGAAACCCTGCTGCAGGCGTTCATCGACGAAGGGCCCACCCAGCTGGAGCTGCAACTGGCACGCAAACAGCTGGAAGGGCAGTTGCTGCGAGGGATCGCGCAGAACAGGCAACTCGCAACACTGCTGACGGAAGTAAcc                                                                 >  5:87016/1‑149 (MQ=255)                                                                          gCACTGGTAGAAACCCTGCTGCAGGCGTTCATCGACGAAGGGCCCACCCAGCTGGAGCTGCAACTGGCACGCAAACAGCTGGAAGGGCAGTTGCTGCGAGGGATCGCGCAGAACAGGCAACTCGCAACACTGCTGACGGAAGt                                                                     <  7:85415/143‑1 (MQ=255)                                                                          gCACTGGTAGAAACCCTGCTGCAGGCGTTCATCGACGAAGGGCCCACCCAGCTGGAGCTGCAACTGGCACGCAAACAGCTGGAAGGGCAGTTGCTGCGAGGGATCGCGCAGAACAGGCAACTCGCAACACTGCTGACGGAAGt                                                                     >  8:85415/1‑143 (MQ=255)                                                                                gTAGAAACCCTGCTGCAGGCGTTCATCGACGAAGGGCCCACCCAGCTGGAGCTGCAACTGGCACGCAAACAGCTGGAAGGGCAGTTGCTGCGAGGGATCGCGCAGAACAGGCAACTCGCAACACTGCTGACGGAAGTAACCCATCAg                                                           <  3:299938/147‑1 (MQ=255)                                                                                gTAGAAACCCTGCTGCAGGCGTTCATCGACGAAGGGCCCACCCAGCTGGAGCTGCAACTGGCACGCAAACAGCTGGAAGGGCAGTTGCTGCGAGGGATCGCGCAGAACAGGCAACTCGCAACACTGCTGACGGAAGTAACCCATCAG‑Cg                                                        <  3:22945/149‑1 (MQ=255)                                                                                gTAGAAACCCTGCTGCAGGCGTTCATCGACGAAGGGCCCACCCAGCTGGAGCTGCAACTGGCACGCAAACAGCTGGAAGGGCAGTTGCTGCGAGGGATCGCGCAGAACAGGCAACTCGCAACACTGCTGACGGAAGTAACCCATCAG‑Cg                                                        >  6:116965/1‑149 (MQ=255)                                                                                   gAAACCCTGCTGCAGGCGTTCATCGACGAAGGGCCCACCCAGCTGGAGCTGCAACTGGCACGCAAACAGCTGGAAGGGCAGTTGCTGCGAGGGATCGCGCAGAACAGGCAACTCGCAACACTGCTGACGGAAGTAACCCATCAG‑CGGc                                                      >  3:175894/1‑148 (MQ=255)                                                                                   gAAACCCTGCTGCAGGCGTTCATCGACGAAGGGCCCACCCAGCTGGAGCTGCAACTGGCACGCAAACAGCTGGAAGGGCAGTTGCTGCGAGGGATCGCGCAGAACAGGCAACTCACAACACTGCTGACGGAAGTAACCCATCAG‑CGGc                                                      >  8:260765/1‑148 (MQ=255)                                                                                     aaCCCTGCTGCAGGCGTTCATCGACGAAGGGCCCACCCAGCTGGAGCTGCAACTGGCACGCAAACAGCTGGAAGGGCAGTTGCTGCGAGGGATCGCGCAGAACAGGCAACTCGCAACACTGCTGACGGAAGTAACCCATCAG‑CGGCAAc                                                   <  6:87016/149‑1 (MQ=255)                                                                                     aaCCCTGCTGCAGGCGTTCATCGACGAAGGGCCCACCCAGCTGGAGCTGCAACTGGCACGCAAACAGCTGGAAGGGCAGTTGCTGCGAGGGATCGCGCAGAACAGGCAACTCGCAACACTGCTGACGGAAGTAACCCATCAG‑CGGCAAc                                                   <  5:95897/149‑1 (MQ=255)                                                                                        ccTGCTGCAGGCGTTCATCGACGAAGGGCCCACCCAGCTGGAGCTGCAACTGGCACGCAAACAGCTGGAAGGGCAGTTGCTGCGAGGGATCGCGCAGAACAGGCAACTCGCAACACTGCTGACGGAAGTAACCCATCAG‑CGGCAACCTg                                                >  1:144739/1‑149 (MQ=255)                                                                                          tgctgcAGGCGTTCATCGACGAAGGGCCCACCCAGCTGGAGCTGCAACTGGCACGCAAACAGCTGGAAGGGCAGTTGCTGCGAGGGATCGCGCAGAACAGGCAACTCGCAACACTGCTGACGGAAGTAACCCATCAG‑CGGCAACCTGcc                                              >  5:193010/1‑149 (MQ=255)                                                                                            ctgcAGGCGTTCATCGACGAAGGGCCCACCCAGCTGGAGCTGCAACTGGCACGCAAACAGCTGGAAGGGCAGTTGCTGCGAGGGATCGCGCAGAACAGGCAACTCGCAACACTGCTGACGGAAGTAACCCATCAG‑CGGTAACCTGCCGa                                            <  3:303449/149‑1 (MQ=255)                                                                                            ctgcAGGCGTTCATCGACGAAGGGCCCACCCAGCTGGAGCTGCAACTGGCACACAAACAGCTGGAAGGGCAGTTGCTGCGAGGGATCGCGCAGAACAGGCAACTCGCAACACTGCTGACGGAAGTAACCCATCAG‑CGGCAACCTGCCg                                             <  6:80218/148‑1 (MQ=255)                                                                                               cAGGCGTTCATCGACGAAGGGCCCACCCAGCTGGAGCTGCAACTGGCACGCAAACAGCTGGAAGGGCAGTTGCTGCGAGGGATCGCGCAGAACAGGCAACTCGCAACACTGCTGACGGAAGTAACCCATCAG‑CGGCAACCTGCCGatc                                          <  6:187190/148‑1 (MQ=255)                                                                                                aGGCGTTCATCGACGAAGGGCCCACCCAGCTGGAGCTGCAACTGGCACGCAAACAGCTGGAAGGGCAGTTGCTGCGAGGGATCGCGCAGAACAGGCAACTCGCAACACTGCTGACGGATGTAACCCATCAG‑CGGCAACCTGCCGa                                            <  1:145073/145‑1 (MQ=255)                                                                                                aGGCGTTCATCGACGAAGGGCCCACCCAGCTGGAGCTGCAACTGGCACGCAAACAGCTGGAAGGGCAGTTGCTGCGAGGGATCGCGCAGAACAGGCAACTCGCAACACTGCTGACGGAGGTAACCCATCAG‑CGGCAACCTGCCGa                                            >  2:145073/1‑145 (MQ=255)                                                                                                   cGTTCATCGACGAAGGGCCCACCCAGCTGGTGCTGGAACTGGGACGCATACAGCTGGAAGTGCAGTTGCTGCGAGGGATCTCGCAGAACAGGCAACTGGCAACACTGCTGACTGAAGTAAACCATCAG‑CTGCAACCTGCCGATCAtctc                                     <  2:263340/149‑1 (MQ=255)                                                                                                       cATCGACGAAGGGCCCACCCAGCTGGAGCTGCAACTGGCACGCAAACAGCTGGAAGGGCAGTTGCTGCGAGGGATCGCGCAGAACAGGCAACTCGCAACACTGCTGACGGAAGTAACCCATCAG‑CGGCAACCTGCCGATCATCTCGac                                  <  7:220980/148‑1 (MQ=255)                                                                                                        aTCGACGAAGGGCCCACCCAGCTGGAGCTGCAACTGGCACGCAAACAGCTGGAAGGGCAGTTGCTGCGAGGGATCGCGCAGAACAGGCAACTCGCAACACTGCTGACGGAAGTAACCCATCAG‑CGGCAACCTGcc                                              >  4:228375/1‑135 (MQ=255)                                                                                                        aTCGACGAAGGGCCCACCCAGCTGGAGCTGCAACTGGCACGCAAACAGCTGGAAGGGCAGTTGCTGCGAGGGATCGCGCAGAACAGGCAACTCGCAACACTGCTGACGGAAGTAACCCATCAG‑CGGCAACCTGcc                                              <  3:228375/135‑1 (MQ=255)                                                                                                         tCGACGAAGGGCCCACCCAGCTGGAGCTGCAACTGGCACGCAAACAGCTGGAAGGGTAGTTGCTGCGAGGGATCGCGCAGAACAGGCAACTCGCAACACTGCTGACGGAAGTAACCCATCAG‑CGGCAACCTGCCGATCATCTCGACACg                               >  2:265886/1‑149 (MQ=255)                                                                                                           gacgaAGGGCCCACCCAGCTGGAGCTGCAACTGGCACGCAAACAGCTGGAAGGGCAGTTGCTGCGAGGGATCGCGCAGAACAGGCAACTCGCAACACTGCTGACGGAAGTAACCCATCAG‑CGGCAACCTGCCGATCATCTCGACACGTa                             >  1:176385/1‑149 (MQ=255)                                                                                                             cgaAGGGCCCACCCAGCTGGAGCTGCAACTGGCACGCAAACAGCTGGAAGGGCAGTTGCTGCGAGGGATCGCGCAGAACAGGCAACTCGCAACACTGCTGACGGAAGTAACCCATCAG‑CGGCAACCTGCCGATCATCTCGACACGTACa                           <  2:135960/149‑1 (MQ=255)                                                                                                                   gCCCACCCAGCTGGAGCTGCAACTGGCACGCAAACAGCTGGAAGGGCAGTTGCTGCGAGGGATCGCGCAGAACAGGCAACTCGCAACACTGCTGACGGAAGTAACCCATCAG‑CGGCAACCTGCCGATCATCTCGACACGTACAGCGccc                     <  6:314279/149‑1 (MQ=255)                                                                                                                    cccacccaGCTGGAGCTGCAACTGGCACGCAAACAGCTGGAAGGGCAGTTGCTGCGAGGGATCGCGCAGAACAGGCAACTCGCAACACTGCTGACGGAAGTAACCCATCAG‑CGGCAACCTGCCGATCATCTCGACACGTACAGCGCCCg                    >  2:76448/1‑149 (MQ=255)                                                                                                                       acccaGCTGGAGCTGCAACTGGCACGCAAAcagctgggtgggcccttcgtcgatgaacgcctgcagcagggtttctaccagtgcctgcgtgccctgcacatgctggggcgcaacctccca                                               <  4:162238‑M2/120‑91 (MQ=255)                                                                                                                       acccaGCTGGAGCTGCAACTGGCACGCAAAcagctgggtgggcccttcgtcgatgaacgcctgcagcagggtttctaccagtgcctgcgtgccctgcacatgctggggcgcaacctccca                                               >  3:162238‑M2/1‑30 (MQ=255)                                                                                                                       acccaGCTGGAGCTGCAACTGGCACGCAAACAGCTGGAAGGGCAGTTGCTGCGAGGGATCGCGCAGAACAGGCAACTCGCAACACTGCTGACGGAAGTAACCCATCAG‑CGGCAACCTGCCGATCATCTCGACACGTACAGCGCCCGTAt                 >  7:245467/1‑149 (MQ=255)                                                                                                                         ccaGCTGGAGCTGCAACTGGCACGCAAAcagctgggtgggcccttcgtcgatgaacgcctgcagcagggc                                                                                               >  4:138722‑M2/1‑28 (MQ=255)                                                                                                                         ccaGCTGGAGCTGCAACTGGCACGCAAAcagctgggtgggcccttcgtcgatgaacgcctgcagcagggc                                                                                               <  3:138722‑M2/70‑43 (MQ=255)                                                                                                                              tGGAGCTGCAACTGGCACGCAAACAGCTGGAAGGGCAGTTGCTGCGAGGGATCGCGCAGAACAGGCAACTCGCAACACTGCTGACGGAAGTAACCCATCAG‑CGGCAACCTGCCGATCATCTCGACACGTACAGCGCCCGTATTGCCGaa          >  2:35168/1‑149 (MQ=255)                                                                                                                                gAGCTGCAACTGGCACGCAAACAGCTGGAAGGGCAGTTGCTGCGAGGGATCGCGCAGAACAGGCAACTCGCAACACTGCTGACGGAAGTAACCCATCAGCCGGCAACCTGCCGATCATCTCGACACGTACAGCGCCCGTATTGCCGAAc         <  1:76448/149‑1 (MQ=255)                                                                                                                                      cAACTGGCACGCAAACAGCTGGAAGGGCAGTTGCTGCGAGGGATCGCGCAGAACAGGCAACTCGCAACACTGCTGACGGAAGTAACCCATCAG‑CGGCAACCTGCCGATCATCTCGACACGTACAGCGCCCGTATTGCCGAACTTAcccc  <  2:176385/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                        ATTGCCATTGAGTGCAGGCGGCCTGTTCACCGTGGAATGGGAGGTTGCGCCCCAGCATGTGCAGGGCACGCAGGCACTGGTAGAAACCCTGCTGCAGGCGTTCATCGACGAAGGGCCCACCCAGCTGGAGCTGCAACTGGCACGCAAACAGCTGGAAGGGCAGTTGCTGCGAGGGATCGCGCAGAACAGGCAACTCGCAACACTGCTGACGGAAGTAACCCATCAG‑CGGCAACCTGCCGATCATCTCGACACGTACAGCGCCCGTATTGCCGAACTTACCCC  >  NC_002947/5838180‑5838461

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.