| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 6056656 = | 79 (1.520) | 4 (0.080) | 4/256 | NT | 5.0% | coding (783/927 nt) | oxyR | oxidative and nitrosative stress transcriptional dual regulator |
| ? | NC_002947 | 6056708 = | 75 (1.500) | coding (835/927 nt) | oxyR | oxidative and nitrosative stress transcriptional dual regulator | |||||
ATGACTCAGGCCGGTTGTTCCGCAGGGTTTTTGGCGACCGAGCACAGGCGGATCGAATCGGCGAGGATCTCGATGGCCTTTGGCCGCGGGAAGCTGGCGCGCCAGGCGATGGCTACCGTGCGGAACGGTGCCGGTGCCGTCAACGGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/6056805‑6056656‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgcGCCAGCT‑TCCCGCGGCCAAAGGCCATCGAGATCCTCGCCGATTCGATCCGCCTGTGCTCGGTCGCCAAAAACCCTGCGGAACAACCGGCCTGAGTCATGAGTGAGCTGTCGAAGGTCCCGGT > NC_002947/6056708‑6056829 ATGACTCAGGCCGGTTGTTCCGCAGGGTTTTTGGCGACCGAGCACAGGCGGATCGAATCGGCGAGGATCTCGATGGCCTTTGGCCGCGGGAAGCTGGCGCGCCAGGCGATGGCTACCGTGCGGAACGGTGCCGGTGCCGTCAACGGGCG > 1:69731/1‑149 TGACTCAGGCCGGTTGTTCCGCAGGGTTTTTGGCGACCGAGCACAGGCGGATCGAATCGGCGAGGATCTCGATGGCCTTTGGCCGCGGGAAGCTGGCGCGCCAGGCGATGGCTACCGTGCGGAACGGTGCCGGTGCCGTCAACGGGCG > 7:235340/1‑148 TGACCCAGGCCGGTTGTTCCGCAGGGTTTTTGGCGACCGAGCACAGGCGGATCGAATCGGCGAGGATCTCGATGGCCTTTGGCCGCGGGAAGCTGGCGCGCCAGGCGATGGCTACCGTGCGGAACGGTGCCGGTGCCGTCAACGGGCG > 3:91966/1‑148 GGCGCGCCAGGCGATGGCTACCGTGCGGAACGGTGCCGGTGCCGTCAACGGGCGCGCCAGCTGTCCCGCGGCCAAAGGCCATCGAGATCCTCGCCGATTCGATCCGCCTGTGCTCGGTCGCCAAAAACCCTGCGGAACAACCGGCCT > 1:97686/1‑147 GCGCGCCAGGCGATGGCTACCGTGCGGAACGGTGCCGGTGCCGTCAACGGGCGCGCCAGCT‑TCCCGCGGCCAAAGGCCATCGAGATCCTCGCCGATTCGATCCGCCTGTGCTCGGTCGCCAAAAACCCTGCGGAA > 7:159454/1‑135 GCGCGCCAGGCGATGGCTACCGTGCGGAACGGTGCCGGTGCCGTCAACGGGCGCGCCAGCT‑TCCCGCGGCCAAAGGCCATCGAGATCCTCGCCGATTCGATCCGCCTGTGCTCGGTCGCCAAAAACCCTGCGGAA < 8:159454/135‑1 AACGGTGCCGGTGCCGTCAACGGGCGCGCCAGCT‑TCCCGCGGCCAAAGGCCATCGAGATCCTCGCCGATTCGATCCGCCTGTGCTCGGTCGCCAAAAACCCTGCGGAACAACCGGCCTGAGTCATGAGTGAGCTGTCGAAGGTCCCGGT < 2:97686/149‑1 GCGCCAGCT‑TCCCGCGGCCAAAGGCCATCGAGATCCTCGCCGATTCGATCCGCCTGTGCTCGGTCGCCAAAAACCCTGCGGAACAACCGGCCTGAG < 5:22920/96‑1 GCGCCAGCT‑TCCCGCGGCCAAAGGCCATCGAGATCCTCGCCGATTCGATCCGCCTGTGCTCGGTCGCCAAAAACCCTGCGGAACAACCGGCCTGAG > 6:22920/1‑96 ATGACTCAGGCCGGTTGTTCCGCAGGGTTTTTGGCGACCGAGCACAGGCGGATCGAATCGGCGAGGATCTCGATGGCCTTTGGCCGCGGGAAGCTGGCGCGCCAGGCGATGGCTACCGTGCGGAACGGTGCCGGTGCCGTCAACGGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/6056805‑6056656‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgcGCCAGCT‑TCCCGCGGCCAAAGGCCATCGAGATCCTCGCCGATTCGATCCGCCTGTGCTCGGTCGCCAAAAACCCTGCGGAACAACCGGCCTGAGTCATGAGTGAGCTGTCGAAGGTCCCGGT > NC_002947/6056708‑6056829 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |