New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6098661 =	56 (1.080)	3 (0.060)	3/256	NT	5.9%	coding (428/867 nt)	PP_5350	RpiR family transcriptional regulator
	?	NC_002947	6098736 =	42 (0.840)					coding (353/867 nt)	PP_5350	RpiR family transcriptional regulator

GACTACAGCCTGAAGATCTTCGACACCACCCTGCACACCCTGATGGAAGTGCGCGAGCACCTTGATCCGCAGGCGCTGCAACAAGCCGTGAGCGCCATGGCCCAGGCGCAGCGGGTAGAGTTCTATGGCTTTGGCGCGTCCGGTGCGGTTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6098812‑6098661 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttgcAGCGCCTGCGGATCAAGGTGCTCGCGCACTTC‑CATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCCAGC  >  NC_002947/6098736‑6098882                                                                                                                                                                                                                                                                                                              GACTACAGCCTGAAGATCTTCGACACCACCCTGCACACCCTGATGGAAGTGCGCGAGCACCTTGATCCGCAGGCGCTGCAACAAGCCGTGAGCGCCATGGCCCAGGCGCACCGGGTAGAGTTCTATGGCTTTGGCGCGTCCGGTGCGGT                                                                                                                                                         >  7:112891/1‑149                                                                     GCAGGCGCTGCAACAAGCCGTGAGCGCCATGGCCCAGGCGCAGCGGGTAGAGTTCTATGGCTTTGGCGCGTCCGGTGCGGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTC‑CATCAGGGTGTGCAGGGTGGTGTAGAAGATCTT                                                                                    >  6:122470/1‑149                                                                           GCTGCAACAAGCCGTGAGCGCCATGGCCCAGGCGCAGCGGGTAGAGTTCTATGGCTTTGGCGCGTCCGGTGCGGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTC‑CATCAGGGTGTGCAGGGTGGTGTCGAAG                                                                                         >  7:265262/1‑138                                                                           GCTGCAACAAGCCGTGAGCGCCATGGCCCAGGCGCAGCGGGTAGAGTTCTATGGCTTTGGCGCGTCCGGTGCGGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTC‑CATCAGGGTGTGCAGGGTGGTGTCGAAG                                                                                         <  8:265262/138‑1                                                                                                                                                     TTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTC‑CATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCCA    <  5:114032/149‑1                                                                                                                                                        CAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCGCATCAGGGTGTGCAGGGTGGTGTCGATGATCTTCAGGCTGTAGTCGGCGACCGATTCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCCAGC  >  1:39687/1‑149                                                                                                                                                                                                                                                                                                              GACTACAGCCTGAAGATCTTCGACACCACCCTGCACACCCTGATGGAAGTGCGCGAGCACCTTGATCCGCAGGCGCTGCAACAAGCCGTGAGCGCCATGGCCCAGGCGCAGCGGGTAGAGTTCTATGGCTTTGGCGCGTCCGGTGCGGTTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6098812‑6098661 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttgcAGCGCCTGCGGATCAAGGTGCTCGCGCACTTC‑CATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCCAGC  >  NC_002947/6098736‑6098882

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.