| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 6098661 = | 56 (1.080) | 3 (0.060) | 3/256 | NT | 5.9% | coding (428/867 nt) | PP_5350 | RpiR family transcriptional regulator |
| ? | NC_002947 | 6098736 = | 42 (0.840) | coding (353/867 nt) | PP_5350 | RpiR family transcriptional regulator | |||||
AGCAGGTCCTTGGAACGGCCCGACTGGGAAATACACACCGCCACATCGCCCGGTTTCAGGGTAACGGCCG‑ACATCGCTTGCATGTGGGGGTCGGAATACGCTGCCGCGCTGAGCAGCAGGCGGAAGAACTTGTGCTGGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGG > NC_002947/6098514‑6098804 | gctggcgcaaagcctggctgccggggccagcttcggtcagttcgccatccacgaagacgaatcggtcgccgactacagcctgaagatcatcgacaccaccctgcacaccctgatgcgaagtgcgcgagcaccttgatccgcaggcgctg > 1:39687‑M1/149‑149 (MQ=255) tggcgcaaagcctggctgccggggccagcttcggtcagttcgccatccacgaagacgattcggtcgccgactacagcctgaagatcttcgacaccaccctgcacaccctgatggaagtgcgcgagcaccttgatccgcaggcgctGCaa < 5:114032‑M1/4‑1 (MQ=255) gTCCTTGGAACGGCCCGACTGGGAAATACACACCGCCACATCGCCCGGTTTCAGGGTAACGGCCG‑ACATCGCTTGCATGTGGGGGTCGGAATACGCTGCCGCGCTGAGCAGCAGGCGGAAGAACTTGTGCTGGGCATCGGCCGCAACCg > 1:2542/1‑149 (MQ=255) cTTGGAACGGCCCGACTGGGAAATACACACCGCCACATCGCCCGGTTTCAGGGTAACGGCCG‑ACATCGCTTGCATGTGGGGGTCGGAATACGCTGCCGCGCTGAGCAGCAGGCGGAAGAACTTGTGCTGGGCATCGGCCGCAACCGCa < 6:70139/148‑1 (MQ=255) ttGGAACGGCCCGACTGGGAAATACACACCGCCACATCGCCCGGTTTCAGGGTAACGGCCG‑ACATCGCTTGCATGTGGGGGTCGGAATACGCTGCCGCGCTGAGCAGCAGGCGGAAGAACTTGTGCTGGGCATCGGCCGCAACCGCAcc > 6:33303/1‑149 (MQ=255) gAACGACCCGACTGGGAAATACACACCGCCACATCGCCCGGTTTCAGGGTAACGGCCG‑ACATCGCTTGCATGTGGGGGTCGGAATACGCTGCCGCGCTGAGCAGCAGGCGGAAGAACTTGTGCTGGGCATCGGCCGCAACCGCACCGGa > 3:46173/1‑149 (MQ=255) cGGCCCGACTGGGAAATACACACCGCCACATCGCCCGGTTTCAGGGTAACGGCCG‑ACATCGCTTGCATGTGGGGGTCGGAATACGCTGCCGCGCTGAGCAGCAGGCGGAAGAACTTGTGCTGGGCATCGGCCGCAACCGCACCGGAcgc < 7:241741/149‑1 (MQ=255) cGGCCCGACTGGGAAATACACACCGCCACATCGCCCGGTTTCAGGGTAACGGCCG‑ACATCGCTTGCATGTGGGGGTCGGAATACGCTGCCGCGCTGAGCAGCAGGCGGAAGAACTTGTGCTGGGCATCGGCCGCAACCGCACCGGAcgc < 4:77841/149‑1 (MQ=255) gACTGGGAAATACACACCGCCACATCGCCCGGTTTCAGGGTAACGGCCG‑ACATCGCTTGCATGTGGGGGTCGGAATACGCTGCCGCGCTGAGCAGCAGGCGGAAGAACTTGTGCTGGGCATCGGCCGCAACCGCACCGGACGCGCCaaa < 2:314767/149‑1 (MQ=255) aCTGGGAAATACACACCGCCACATCGCCCGGTTTCAGGGTAACGGCCG‑ACATCGCTTGCATGTGGGGGTCGGAATACGCTGCCGCGCTGAGCAGCAGGCGGAAGAACTTGTGCTGGGCATCGGCCGCAACCGCACCGGACGCGCCAAAg > 7:249023/1‑149 (MQ=255) aCTGGGAAATACACACCGCCACATCGCCCGGTTTCAGGGTAACGGCCG‑ACATCGCTTGCATGTGGGGGTCGGAATACGCTGCCGCGCTGAGCAGCAGGCGGAAGAACTTGTGCTGGGCATCGGCCGCAACCGCACCGGACGCGCCAAAg < 3:134124/149‑1 (MQ=255) cTGGGAAATACACACCGCCACATCGCCCGGTTTCAGGGTAACGGCCG‑ACATCGCTTGCATGTGGGGGTCGGAATACGCTGCCGCGCTGAGCAGCAGGCGGAAGAACTTGTGCTGGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGc < 1:114077/149‑1 (MQ=255) aaaTACACACCGCCACATCGCCCGGTTTCAGGGTAACGGCCG‑ACATCGCTTGCATGTGGGGGTCGGAATACGCTGCCGCGCTGAGCAGCAGGCGGAAGAACTTGTGCTGGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCa > 3:36539/1‑146 (MQ=255) aaaTACACACCGCCACATCGCCCGGATACACGGAAACGGCCG‑ACATCGCTTGCATCTGCGGGTCCGAATACCCTGCCCCGCTGAGCAGCAGGCGGAACAACATGTGCTGCGCATCGGCCGCAACCGCACCGGACGCGCCAAACCCa > 5:81390/1‑146 (MQ=255) aaTACTCACCGCCACATCGCCCGGTTTCAGGGTAACGGCCG‑ACTTCTCTTGCTTGTGGGGGTCGGAATACGCTGCCGCGCTGAGCAGCAGTCGGAAGAACTTGTGCTGGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATat < 6:81390/148‑2 (MQ=255) acacCGCCACATCGCCCGGTTTCAGGGTAACGGCCG‑ACATCGCTTGCATGTGGGGGTCGGAATACGCTGCCGCGCTGAGCAGCAGGCGGAAGAACTTGTGCTGGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAActc > 8:64138/1‑148 (MQ=255) ccGCCACATCGCCCGGTTTCAGGGTAACGGCCG‑ACATCGCTTGCATGTGGTGGTCGGAATACTCTGCCGCGCTGAGCAGCAGGCGGAAGAACTTGTGCTGGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTAcc < 8:38765/149‑1 (MQ=255) cGCCACATCGCCCGGTTTCAGGGTAACGGCCG‑ACATCGCTTGCATGTGGGGGTCGGAATACGCTGCCGCGCTGAGCAGCAGGCGGAAGAACTTGTGCTGGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTAccc > 8:248774/1‑149 (MQ=255) ccACATCGCCCGGTTTCAGGGTAACGGCCGTACATCGCTTGCATGTGGGGGTCGGAATACGCTGCCGCGCTGAGCAGCAGGCGGAAGAACTTGTGCTGGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCg > 1:195235/1‑149 (MQ=255) aTCGCCCGGTTTCAGGGTAACGGCCG‑ACATCGCTTGCATGTGGGGGTCGGAATACGCTGCCGCGCTGAGCAGCAGGCGGAAGAACTTGTGCTGGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTgcg > 8:112891/1‑149 (MQ=255) gCCCGGTTTCAGGGTAACGGCCG‑ACATCGCTTGCATGTGGGGGTCGGAATACGCTGCCGCGCTGAGCAGCAGGCGGAAGAACTTGTGCTGGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCt > 7:105234/1‑149 (MQ=255) cccGGTTTCAGGGTAACGGCCG‑ACATCGCTTGCATGTGGGGGTCGGAATACGCTGCCGCGCTGAGCAGCAGGCGGAAGAACTTGTGCTGGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTg > 1:254830/1‑149 (MQ=255) ccGGTTTCAGGGTAACGGCCG‑ACATCGCTTGCATGTGGGGGTCGGAATACGCTGCCGCGCTGAGCAGCAGGCGGAAGAACTTGTGCTGGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTgg > 5:261379/1‑149 (MQ=255) cGGTTTCAGGGTAACGGCCG‑ACATCGCTTGCATGTGGGGGTCGGAATACGCTGCCGCGCTGAGCAGCAGGCGGAAGAACTTGTGCTGGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTggg > 4:165429/1‑149 (MQ=255) ttCAGGGTAACGGCCG‑ACATCGCTTGCATGTGGGGGTCGGAATACGCTGCCGCGCTGAGCAGCAGGCGGAAGAACTTGTGCTGGGCATCGGCCGCAACCGCACCgg < 1:197864/106‑1 (MQ=255) ttCAGGGTAACGGCCG‑ACATCGCTTGCATGTGGGGGTCGGAATACGCTGCCGCGCTGAGCAGCAGGCGGAAGAACTTGTGCTGGGCATCGGCCGCAACCGCACCgg > 2:197864/1‑106 (MQ=255) cAGGGTAACGGCCG‑ACATCGCTTGCATGTGGGGGTCGGAATACGCTGCCGCGCTGAGCAGCAGGCGGAAGAACTTGTGCTGGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATg < 8:105234/148‑1 (MQ=255) aaCGGCCG‑ACATCGCTTGCATGTGGGGGTCGGAATACGCTGCCGCGCTGAGCAGCAGGCGGAAGAACTTGTGCTGGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTcc > 1:279127/1‑148 (MQ=255) aCGGCCG‑ACATCGCTTGCATGTGGGGGTCGGAATACGCTGCCGCGCTGAGCAGCAGGCGGAAGAACTTGTGCTGGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCAc < 5:33303/149‑1 (MQ=255) cATCGCTTGCATGTGGGGGTCGGAATACGCTGCCGCGCTGAGCAGCAGGCGGAAGAACTTGTGCTGGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCttgtt < 3:165429/149‑1 (MQ=255) cTTGCATGTGGGGGTCGGAATACGCTGCCGCGCTGAGCAGCAGGCGGAAGAACTTGTGCTGGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAgc < 2:195235/149‑1 (MQ=255) aTGTGGGGGTCGGAATACGCTGCCGCGCGGAGCAGCAGGCGGAAGAACTTGTGCTGGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTg < 8:249023/149‑1 (MQ=255) aTGTGGGGGTCGGAATACGCTGCCGCGCCGAGCAGCAGGCGGAAGAACTTGTGCTGGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGc > 4:224653/1‑91 (MQ=255) aTGTGGGGGTCGGAATACGCTGCCGCGCCGAGCAGCAGGCGGAAGAACTTGTGCTGGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGc < 3:224653/91‑1 (MQ=255) aagatcttctacaccaccctgcacaccctgatggaagtgcgcgagcaccttgatccgcaggcgctGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGc > 6:122470‑M1/66‑149 (MQ=255) gggggTCGGAATACGCTGCCGCGCTGAGCAGCAGGCGGAAGAACTTGTGCTGGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTAc < 5:207058/100‑1 (MQ=255) gggggTCGGAATACGCTGCCGCGCTGAGCAGCAGGCGGAAGAACTTGTGCTGGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTAc > 6:207058/1‑100 (MQ=255) cttcgacaccaccctgcacaccctgatggaagtgcgcgagcaccttgatccgcaggcgctGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAgc < 8:265262‑M1/78‑1 (MQ=255) cttcgacaccaccctgcacaccctgatggaagtgcgcgagcaccttgatccgcaggcgctGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAgc > 7:265262‑M1/61‑138 (MQ=255) ggTCGGAATACGCTGCCGCGCTGAGCAGCAGGCGGAAGAACTTGTGCTGGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCa < 4:303694/149‑1 (MQ=255) cGGAATACGCTGCCGCGCTGAGCAGCAGGCGGAAGAACTTGTGCTGGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAgcgc > 1:212222/1‑136 (MQ=255) cGGAATACGCTGCCGCGCTGAGCAGCAGGCGGAAGAACTTGTGCTGGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAgcgc < 2:212222/136‑1 (MQ=255) cGGAATACGCTGCCGCGCTGAGCAGCAGGCGGAAGAACTTGTGCTGGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAg > 2:203277/1‑148 (MQ=255) cGGAATACGCTGCCGCGCTGAGCAGCAGGCGGAAGAACTTGTGCTGGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAg < 1:203277/148‑1 (MQ=255) aaTACGCTGCCGCGCTGAGCAGCAGGCGGAAGAACTTGTGCTGGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGc > 8:78174/1‑149 (MQ=255) gCTGCCTCGCTGAGGAGCAGGCGGAAGAACTTGTGCTGGGCATCGGCCGCAACCGCACCGGACGCGACAAAGACATAGAACTCTACCCGCTGCGCCTGGGCCATGgcgc < 4:214639/109‑1 (MQ=255) ccGCGCTGAGCAGCAGGCGGAAGAACTTGTGCTGGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCa < 2:254830/147‑1 (MQ=255) cgcgCTGAGCAGCAGGCGGAAGAACTTGTGCTGGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACtt > 8:218696/1‑149 (MQ=255) gcTGAGCAGCAGGCGGAAGAACTTGTGCTGGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCa < 2:23664/149‑1 (MQ=255) agcagcAGGCGGAAGAACTTGTGCTGGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCa < 7:78174/148‑1 (MQ=255) gcagcaGGCGGAAGAACTTGTGCTGGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTTCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAgg < 4:46173/149‑1 (MQ=255) gCGGAAGAACTTGTGCTGGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGtgtg > 3:155126/1‑147 (MQ=255) gaagaaCTTGTGCTGGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAggg < 2:2542/149‑1 (MQ=255) agaaCTTGTGCTGGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGggtg < 6:261379/149‑1 (MQ=255) aCTTGTGCTGGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGGgtggtg > 4:62012/1‑149 (MQ=255) gtgCTGGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCg < 7:64138/148‑1 (MQ=255) gCTGGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAg < 2:103427/106‑1 (MQ=255) gggCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCCGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATc > 1:221489/1‑149 (MQ=255) gggCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATc > 5:253294/1‑149 (MQ=255) ggCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATc < 3:62012/148‑1 (MQ=255) aTCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCa < 7:248774/149‑1 (MQ=255) cGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAgg > 6:114032/1‑149 (MQ=255) | AGCAGGTCCTTGGAACGGCCCGACTGGGAAATACACACCGCCACATCGCCCGGTTTCAGGGTAACGGCCG‑ACATCGCTTGCATGTGGGGGTCGGAATACGCTGCCGCGCTGAGCAGCAGGCGGAAGAACTTGTGCTGGGCATCGGCCGCAACCGCACCGGACGCGCCAAAGCCATAGAACTCTACCCGCTGCGCCTGGGCCATGGCGCTCACGGCTTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGG > NC_002947/6098514‑6098804 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |