New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 14235846 (0.880)3 (0.060) 3/256 NT 6.0% coding (302/822 nt) PP_0134 hypothetical protein
?NC_002947 = 142391 50 (1.000)coding (335/822 nt) PP_0134 hypothetical protein

GACGGCAAGCAGGCGCGGCTTTCCGGTGAGGTGGAGAACGAGGTCGAGCGGCAGCTGGCCGAGGACGTGGCCCGTGCTACCCGGGGCATCGAACAGGTAGAGAACCTGCTGCAGCTCAATGCCCAACTGGTGGAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGACGTGACCCTGGCGGCGGTGATCCGTGCTCGGCTGTTGTGGAGCCGTACCACCGAAAAGGCACCTATAGAAGTACAGAGCAGCGAGGGTGTGGTGACGTTGCGTGGCAAG  >  NC_002947/142219‑142503
                                                                                                                                           |                                                                                                                                                 
gACGGCAAGCAGGCGCGGCTTTCCGGTGAGGTGGAGAACGAGGTCGAGCGGCAGCTGGCCGAGGACGTGGCCCGTGCTACCCGGGGCATCGAACAGGTAGAGAACCTGCTGCAGCTCAATGCCCAACTGGTGGAGCGTCCGCAGGAGCt                                                                                                                                          <  3:35471/149‑1 (MQ=255)
     cAAGCAGGCGCGGCTTTCCGGTGAGGTGGAGAACGAGGTCGAGCTGCAGCTGGCCGAGGACGTGGCCCGTGCTACCCGGGGCATCGAACAGGTACAGAACCTGCTGCAGCTCAAAGCCCAACTGGTGGAGCGTCCGCAGGAGCTGCGTg                                                                                                                                     >  4:108718/1‑149 (MQ=255)
        gCAGGCGCGGCTTTCCGGTGAGGTGGAGAACGAGGTCGAGCGGCAGCTGGCCGAGGACGTGGCCCGTGCTACCCGGGGCATCGAACAGGTAGAGAACCTGCTGCAGCTCAATGCCCAACTGGTGGAGCGTCCGCAGGa                                                                                                                                             >  4:278920/1‑138 (MQ=255)
        gCAGGCGCGGCTTTCCGGTGAGGTGGAGAACGAGGTCGAGCGGCAGCTGGCCGAGGACGTGGCCCGTGCTACCCGGGGCATCGAACAGGTAGAGAACCTGCTGCAGCTCAATGCCCAACTGGTGGAGCGTCCGCAGGa                                                                                                                                             <  3:278920/138‑1 (MQ=255)
         cAGGCGCGGCTTTCCGGTGAGGTGGAGAACGAGGTCGAGCGGCAGCTGGCCGAGGATGTGGCCCGTGCTACCCGGGGCATCGAACAGGTAGAGAACCTGCTGCAGCTCAATGCCCAACTGGTGGAGCGTCCGCAGGAGCTGCGTGCCTa                                                                                                                                 >  8:57070/1‑149 (MQ=255)
                     tCCGGTGAGGTGGAGAACGAGGTCGAGCGGCAGCTGGCCGAGGACGTGGCCCGTGCTACCCGGGGCATCGAACAGGTAGAGAACCTGCTGCAGCTCAATGCCCAACTGGTGGAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGcc                                                                                                                      <  6:109713/148‑1 (MQ=255)
                      ccGGTGAGGTGGAGAACGAGGTCGAGCGGCAGCTGGCCGAGGACGTGGCCCGTGCTACCCGGGGCATCGAACAGGTAGAGAACCTGCTGCAGCTCAATGCCCAACTGGTGGAGCGTCCGCAGGAGCTGTGTGCCTACGCCCAGCGCCt                                                                                                                     <  6:211783/148‑1 (MQ=255)
                       cGGTGAGGTGGAGAACGAGGTCGAGCGGCAGCTGGCCGAGGACGTGGCCCGTGCTACCCGGGGCATCGAACAGGTAGAGAACCTGCTGCAGCTCAATGCCCAACTGGTGGAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTg                                                                                                                    <  1:299920/148‑1 (MQ=255)
                        ggTGAGGTGGAGAACGAGGTCGAGCGGCAGCTGGCCGAGGACGTGGCCCGTGCTACCCGGGGCATCGAACAGGTAGAGAACCTGCTGCAGCTCAATGCCCAACTGGTGGAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTgga                                                                                                                  <  3:173820/149‑1 (MQ=255)
                         gTGAGGTGGAGAACGAGGTCGAGCGGCAGCTGGCCGAGGACGTGGCCCGTGCTACCCGGGGCATCGAACAGGTAGAGAACCTGCTGCAGCTCAATGCCCAACTGGTGGAGCGTCCGCAGGAGCTGCGTGCCTACGCCCa                                                                                                                           <  1:196143/139‑1 (MQ=255)
                         gTGAGGTGGAGAACGAGGTCGAGCGGCAGCTGGCCGAGGACGTGGCCCGTGCTACCCGGGGCATCGAACAGGTAGAGAACCTGCTGCAGCTCAATGCCCAACTGGTGGAGCGTCCGCAGGAGCTGCGTGCCTACGCCCa                                                                                                                           >  2:196143/1‑139 (MQ=255)
                            aGGTGGAGAACGAGGTCGAGCGGCAGCTGGCCGAGGACGTGGCCCGTGCTACCCGGGGCATCGAACAGGTAGAGAACCTGCTGCAGCTCAATGCCCAACTGGTGGAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAggac                                                                                                              >  6:156874‑M2/1‑145 (MQ=255)
                             ggTGGAGAACGAGGTCGAGCGGCAGCTGGCCGAGGACGTGGCCCGTGCTACCCGGGGCATCGAACAGGTAGAGAACCTGCTGCAGCTCAATGCCCAACTGGTGGAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAggacg                                                                                                             <  4:141779‑M2/149‑6 (MQ=255)
                              gTGGAGAACGAGGTCGAGCGGCAGCTGGCCGAGGACGTGGCCCGTGCTACCCGGGGCATCGAACAGGTAGAGAACCTGCTGCAGCTCAATGCCCAACTGGTGGAGCGTCCtccaggcgctgggcgtaggcacgcagctcctgcggacgc                                                                                                            >  1:60411‑M1/1‑110 (MQ=255)
                               tGGAGAACGAGGTCGAGCGGCAGCTGGCCGAGGACGTGGCCCGTGCTACCCGGGGCATCGAACAGGTAGAGAACCTGCTGCAGCTCAATGCCCAACTGGTGGAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGACGt                                                                                                            >  8:229557/1‑148 (MQ=255)
                                 gagaACGAGGTCGAGCGGCAGCTGGCCGAGGACGTGGCCCGTGCTACCCGGGGCATCGAACAGGTAGAGAACCTGCTGCAGCTCAATGCCCAACTGGTGGAGCGTCCtccaggcgctgggcgtaggcacgcagctcctgcggacgctc                                                                                                          <  6:21542‑M1/148‑42 (MQ=255)
                                   gaACGAGGTCGAGCGGCAGCTGGCCGAGGACGTGGCCCGTGCTACCCGGGGCATCGAACAGGTAGAGAACCTGCTGCAGCTCAATGCCCAACTGGTGGAGCGTCCtccaggcgctgggcgtaggcacgcagctcctgcggacgctccac                                                                                                       <  2:60411‑M1/149‑45 (MQ=255)
                                    aaCGAGGTCGAGCGGCAGCTGGCCGAGGACGTGGCCCGTGCTACCCGGGGCATCGAACAGGTAGAGAACCTGCTGCAGCTCAATGCCCAACTGGTGGAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGACGTGACCCt                                                                                                      >  2:227510/1‑149 (MQ=255)
                                      cGAGGTCGAGCGGCAGCTGGCCGAGGACGTGGCCCGTGCTACCCGGGGCATCGAACAGGTAGAGAACCTGCTGCAGCTCAATGCCCAACTGGTGGAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGACGTGACCCTgg                                                                                                    >  2:302792/1‑149 (MQ=255)
                                            cGAGCGGCAGCTGGCCGAGGATGTGGCCCGTGCTACCCGGGGCATCGAACAGGTAGAGAACCTGCTGCAGCTCAATGCCCAACTGGTGGAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGACGTGACCCTGGcggcgg                                                                                              <  7:57070/149‑1 (MQ=255)
                                             gAGCGGCAGCTGGCCGAGGACGTGGCCCGTGCTACCCGGGGCATCGAACAGGTAGAGAACCTGCTGCAGCTCAATGCCCAACTGGTGGAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGACGTGACCCTGGCGGCGGt                                                                                             >  4:278930/1‑149 (MQ=255)
                                             gAGCGGCAGCTGGCCGAGGACGTGGCCCGTGCTACCCGGGGCATCGAACAGGTAGAGAACCTGCTGCAGCTCAATGCCCAACTGGTGGAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGACGTGACCCTGGCGGCGGt                                                                                             >  7:248085/1‑149 (MQ=255)
                                             gAGCGGCAGCTGGCCGAGGACGTGGCCCGTGCTACCCGGGGCATCGAACAGGTAGAGAACCTGCTGCAGCTCAATGCCCAACTGGTGGAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGACGTGACCCTGGCGGCGGt                                                                                             <  3:229464/149‑1 (MQ=255)
                                                 ggCAGCTGGCCGAGGACGTGGCCCGTGCTACCCGGGGCATCGAACAGGTAGAGAACCTGCTGCAGCTCAATGCCCAACTGGTGGAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGACGTGACCCTGGCGGCGGTGATc                                                                                         <  5:173631/149‑1 (MQ=255)
                                                  gCAGCTGGCCGAGGACGTGGCCCGTGCTACCCGGGGCATCGAACAGGTAGAGAACCTGCTGCAGCTCAATGCCCAACTGGTGGAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGACGTGACCCTGGCGGCGGTGATcc                                                                                        >  1:128924/1‑149 (MQ=255)
                                                    aGCTGGCCGAGGACGTGGCCCGTGCTACCCGGGGCATCGAACAGGGAGAGAACCTGCTGCAGCTCAATGCCCAACTGGTGGAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGACGTGACCCTGGCGGCGGTGATCCGt                                                                                      >  3:36948/1‑149 (MQ=255)
                                                      cTGGCCGAGGACGTGGCCCGTGCTACCCGGGGCATCGAACAGGTAGAGAACCTGCTGCAGCTCAATGCCCAACTGGTGGAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGACGTGACCCTGGCGGCGGTGATCCGTGc                                                                                    <  4:172908/149‑1 (MQ=255)
                                                          ccGAGGACGTGGCCCGTGCTACCCGGGGCATCGAACAGGTAGAGAACCTGCTGCAGCTCAATGCCCAACTGGTGGAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGACGTGACCCTGGCGGCGGTGATCCGTGCTCgg                                                                                <  3:278930/149‑1 (MQ=255)
                                                            gAGGACGTGGCCCGTGCTACCCGGGGCATCGAACAGGTAGAGAACCTGCTGCAGCTCAATGCCCAACTGGTGGAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGACGTGACCCTGGCGGCGGTGATCCGTGCTCGGCt                                                                              <  3:271035/149‑1 (MQ=255)
                                                                  gTGGCCCGTGCTACCCGGGGCATCGAACAGGTAGAGAACCTGCTGCAGCTCAATGCCCAACTGGTGGAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGACGTGACCCTGGCGGCGGTGATCCGTGCTCGGCTGTtgtg                                                                        <  4:254531/149‑1 (MQ=255)
                                                                    ggCCCGTGCTACCCGGGGCATCGAACAGGTAGAGAACCTGCTGCAGCTCAATGCCCAACTGGTGGAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGACGTGACCCTGGCGGCGGTGATCCGTGCTCGGCTGTtgtg                                                                        >  3:262021/1‑147 (MQ=255)
                                                                     gCCCGTGCTACCCGCGGCATCGAACAGGTAGAGAACCTGCTGCAGCTCAATGCCCAACTGGTGGAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGAAGTGACCCTCGCGGCGGTGATCCGTGCACGGCTGTTGTGCAg                                                                     >  6:3502/1‑149 (MQ=255)
                                                                       ccGTGCTACCCGGGGCATCGAACAGGTAGAGAACCTGCTGCAGCTCAATGCCCAACTGGTGGAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGACGTGACCCTGGCGGCGGTGATCCGTGCTCGGCTGTTGTGGAGcc                                                                   >  6:261598/1‑149 (MQ=255)
                                                                                ccGGGGCATCGAACAGGTAGAGAACCTGCTGCAGCTCAATGCCCAACTGGTGGAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGACGTGACCCTGGCGGCGGTGATCCGTGCTCGGCTGTTGTGGAGCCGTACCACCg                                                          <  4:262021/149‑1 (MQ=255)
                                                                                    ggCATCGAACAGGTAGAGAACCTGCTGCAGCTCAATGCCCAACTGGTGGAGCGTCCGGAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGACGTGACCCTGGCGGCGGTGATCCGTGCTCGGCTGTTGTGGAGCCGTACCACCGaaaa                                                      <  7:268925/149‑1 (MQ=255)
                                                                                     gCATCGAACAGGTAGAGAACCTGCTGCAGCTCAATGCCCAACTGGTGGAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGACGTGACCCTGGCGGCGGTGATCCGTGCTCGGCTGTTGTGGAGCCGTACCACCGAAAAg                                                     <  8:115268/149‑1 (MQ=255)
                                                                                          gAACAGGTAGAGAACCTGCTGCAGCTCAATGCCCAACTGGTGGAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGACGTGACCCTGGCGGCGGTGATCCGTGCTCGGCTGTTGTGGAGCCGTACCACCGAAAAGGCAcc                                                >  4:196580/1‑149 (MQ=255)
                                                                                          gAACAGGTAGAGAACCTGCTGCAGCTCAATGCCCAACTGGTGGAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGACGTGACCCTGGCGGCGGTGATCCGTGCTCGGCTGTTGTGGAGCCGTACCACCGAAAAGGCAc                                                 <  1:302792/148‑1 (MQ=255)
                                                                                                gTAGAGAACCTGCTGCAGCTCAATGCCCAACTGGTGGAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGACGTGACCCTGGCGGCGGTGATCCGTGCTCGGCTGTTGTGGAGCCGTACCACCGAAAAGGCACCTATAg                                           >  6:30792/1‑148 (MQ=255)
                                                                                                   gagaACCTGCTGCAGCTCAATGCCCAACTGGTGGAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGACGTGACCCTGGCGGCGGTGATCCGTGCTCGGCTGTTGTGGAGCCGTACCACCGAAAAGGCACCTATAGAAGt                                       <  8:19926/149‑1 (MQ=255)
                                                                                                                 gCTCAATGCCCAACTGGTGGAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGACGTGACCCTGGCGGCGGTGATCCGTGCTCGGCTGTTGTGGAGCCGTACCACCGAAAAGGCACCTATAGAAGTACAGAGCAGCGAgg                         <  7:229557/149‑1 (MQ=255)
                                                                                                                 gCTAAATGCCCTTCTGGTGGAGCGTCCGCAGGAGCTGCGTGCCTTCGCCCAGCGGCTGGAGGACGTGACCCTGGCGGCGGTGATCCGTGCTCGGCTGTTGTGGAGCGGTACCACCGAAAAGGCACCTATAGAAGTACAGAGCAGCGAgg                         <  3:108718/149‑1 (MQ=255)
                                                                                                                  cTCAATGCCCAACTGGTGGAGCGTCCGCAGGATCTGCGTGCCTACGCCCAGCGCCTGGATGACGTGACCCTGGCGGCGGTTATCCGTGCTCGGCTGTTGTGGAGCCGTACCACCGAAAAGGCACCTATAGAAGTACAGAGCAGCGAg                          <  5:3502/147‑1 (MQ=255)
                                                                                                                     aaTGCCCAACTGGTGGAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGACGTGACCCTGGCGGCGGTGATCCGTGCTCGGCTGTTGTGGAGCCGTACCACCGAAAAGGCACCTATAGAAGTACAGAGCAGCGAGGgt                       <  3:196580/147‑1 (MQ=255)
                                                                                                                      aTGCCCAACTGGTGGAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGACGTGACCCTGGCGGCGGTGATCCGTGCTCGGCTGTTGTGGAGCCGTACCACCGAAAAGGCACCTATAGAAGTACAGAGCAGCGAGGGtgtg                    <  5:261598/149‑1 (MQ=255)
                                                                                                                          ccAACTGGTGGAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGACGTGACCCTGGCGGCGGTGATCCGTGCTCGGCTGTTGTGGAGCCGTACCACCGAAAAGGCACCTATAGAAGTACAGAGCAGCGAGGGTGTGGTGa                >  5:109466/1‑149 (MQ=255)
                                                                                                                               tggtggAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGACGTGACACTGGCGGCGGTGATCCGTGCTCGGCTGTTGTGGAGCCGTACCACCGAAAATGCACCTATAGAAGTACAGAGCAGCGAGGGTGTGGTGACGTTg           >  6:186828/1‑149 (MQ=255)
                                                                                                                               tggtggAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGACGTGACACTGGCGGCGGTGATCCGTGCTCGGCTGTTGTGGAGCCGTACCACCGAAAAGGCACCTATAGAAGTACAGAGCAGCGAGGGTGTGGTGACGTTg           >  6:306573/1‑149 (MQ=255)
                                                                                                                               tggtggAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGACGTGACACTGGCGGCGGTGATCCGTGCTCGGCTGTTGTGGAGCCGTACCACCGAAAAGGCACCTATAGAAGTACAGAGCAGCGAGGGTGTGGTGACGTTg           >  6:191336/1‑149 (MQ=255)
                                                                                                                                 gtggAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAggacgctccaccagttgggcattgagctgcagcaggttctctacctgttcgatgccccgggtagcacgggccacgtcctcggccagctgccgctcgacctcgttc         <  2:60411‑M2/149‑106 (MQ=255)
                                                                                                                                 gtggAGCGTCCCCAGGAGCAGCGTGCCTACCCCCAGCGCCTGGAGGACGTGACCCTGGCGGCGGAGATCCGTGCTCGGCTGTTGTGGAGCCGTACCACCCAAAAGGCACCTATAGAAGTACAGAGCAGCGAGGGTGTGGTGCCGTTgag         >  2:35759/1‑147 (MQ=255)
                                                                                                                                  tggAGCGTCCGCGGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGACGTGACCCTGGCGGCGGTGATCCGTGCTCGGCTGTTGTGGAGCCGTACCACCGAAAAGGCACCTATAGAAGTACAGAGCAGCGAGGGTGTGGTGACGTTGCGt        >  8:299365/1‑149 (MQ=255)
                                                                                                                                    gAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAggacgctccaccagttgggcattgagctgcagcaggttctctacctgttcgatgccccgggtagcacgggccacgtcctcggccagctgccgctcgacctcgttctc       <  6:21542‑M2/148‑108 (MQ=255)
                                                                                                                                      gCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAggacgctccaccagttgggcattgagctgcagcaggttctctacctgttcgatgccccgggtagcacgggccacgtcctcggccagctgccgctcgacctcgttctccac    >  1:60411‑M2/1‑39 (MQ=255)
                                                                                                                                       cGTCCtccaggcgctgggcgtaggcacgcagctcctgcggacgctccaccagttgggcattgagctgcagcaggttctctacctgttcgatgccccgggtagcacgggccacgtcctcggccagctgccgctcgacctcgttctccacc   <  4:141779‑M1/149‑145 (MQ=255)
                                                                                                                                        gTCCtccaggcgctgggcgtaggcacgcagctcctgcggacgctccaccagttgggcattgagctgcagcaggttctctacctgttcgatgccccgggtagcacgggccacgtcctcggccagctgccgctcgacctcgttctccacct  >  6:156874‑M1/1‑4 (MQ=255)
                                                                                                                                        gTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGACGTGACCCTGGCGGCGGTGATCCGTGCTCGGCTGTTGTGGAGCCGTACCACCGAAAAGGCACCTATAGAAGTACAGAGCAGCGAGGGTGTGGTGACGTTGCGTGGCAAg  <  5:30792/149‑1 (MQ=255)
                                                                                                                                           |                                                                                                                                                 
GACGGCAAGCAGGCGCGGCTTTCCGGTGAGGTGGAGAACGAGGTCGAGCGGCAGCTGGCCGAGGACGTGGCCCGTGCTACCCGGGGCATCGAACAGGTAGAGAACCTGCTGCAGCTCAATGCCCAACTGGTGGAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGACGTGACCCTGGCGGCGGTGATCCGTGCTCGGCTGTTGTGGAGCCGTACCACCGAAAAGGCACCTATAGAAGTACAGAGCAGCGAGGGTGTGGTGACGTTGCGTGGCAAG  >  NC_002947/142219‑142503

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.