New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 14235846 (0.880)3 (0.060) 3/256 NT 6.0% coding (302/822 nt) PP_0134 hypothetical protein
?NC_002947 = 142391 50 (1.000)coding (335/822 nt) PP_0134 hypothetical protein

GGTGAGGTGGAGAACGAGGTCGAGCGGCAGCTGGCCGAGGACGTGGCCCGTGCTACCCGGGGCATCGAACAGGTAGAGAACCTGCTGCAGCTCAATGCCCAACTGGTGGAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGACGTGACCCTGGCGGCGGTGATCCGTGCTCGGCTGTTGTGGAGCCGTACCACCGAAAAGGCACCTATAGAAGTACAGAGCAGCGAGGGTGTGGTGACGTTGCGTGGCAAGGTCGACAGTGCCGAAGCCAAGGAGCTGG  >  NC_002947/142243‑142531
                                                                                                                                                    |                                                                                                                                            
ggTGAGGTGGAGAACGAGGTCGAGCGGCAGCTGGCCGAGGACGTGGCCCGTGCTACCCGGGGCATCGAACAGGTAGAGAACCTGCTGCAGCTCAATGCCCAACTGGTGGAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTgga                                                                                                                                              <  3:173820/149‑1 (MQ=255)
    aGGTGGAGAACGAGGTCGAGCGGCAGCTGGCCGAGGACGTGGCCCGTGCTACCCGGGGCATCGAACAGGTAGAGAACCTGCTGCAGCTCAATGCCCAACTGGTGGAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAggac                                                                                                                                          >  6:156874‑M2/1‑145 (MQ=255)
     ggTGGAGAACGAGGTCGAGCGGCAGCTGGCCGAGGACGTGGCCCGTGCTACCCGGGGCATCGAACAGGTAGAGAACCTGCTGCAGCTCAATGCCCAACTGGTGGAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAggacg                                                                                                                                         <  4:141779‑M2/149‑6 (MQ=255)
       tGGAGAACGAGGTCGAGCGGCAGCTGGCCGAGGACGTGGCCCGTGCTACCCGGGGCATCGAACAGGTAGAGAACCTGCTGCAGCTCAATGCCCAACTGGTGGAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGACGt                                                                                                                                        >  8:229557/1‑148 (MQ=255)
            aaCGAGGTCGAGCGGCAGCTGGCCGAGGACGTGGCCCGTGCTACCCGGGGCATCGAACAGGTAGAGAACCTGCTGCAGCTCAATGCCCAACTGGTGGAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGACGTGACCCt                                                                                                                                  >  2:227510/1‑149 (MQ=255)
              cGAGGTCGAGCGGCAGCTGGCCGAGGACGTGGCCCGTGCTACCCGGGGCATCGAACAGGTAGAGAACCTGCTGCAGCTCAATGCCCAACTGGTGGAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGACGTGACCCTgg                                                                                                                                >  2:302792/1‑149 (MQ=255)
                    cGAGCGGCAGCTGGCCGAGGATGTGGCCCGTGCTACCCGGGGCATCGAACAGGTAGAGAACCTGCTGCAGCTCAATGCCCAACTGGTGGAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGACGTGACCCTGGcggcgg                                                                                                                          <  7:57070/149‑1 (MQ=255)
                     gAGCGGCAGCTGGCCGAGGACGTGGCCCGTGCTACCCGGGGCATCGAACAGGTAGAGAACCTGCTGCAGCTCAATGCCCAACTGGTGGAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGACGTGACCCTGGCGGCGGt                                                                                                                         >  7:248085/1‑149 (MQ=255)
                     gAGCGGCAGCTGGCCGAGGACGTGGCCCGTGCTACCCGGGGCATCGAACAGGTAGAGAACCTGCTGCAGCTCAATGCCCAACTGGTGGAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGACGTGACCCTGGCGGCGGt                                                                                                                         >  4:278930/1‑149 (MQ=255)
                     gAGCGGCAGCTGGCCGAGGACGTGGCCCGTGCTACCCGGGGCATCGAACAGGTAGAGAACCTGCTGCAGCTCAATGCCCAACTGGTGGAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGACGTGACCCTGGCGGCGGt                                                                                                                         <  3:229464/149‑1 (MQ=255)
                         ggCAGCTGGCCGAGGACGTGGCCCGTGCTACCCGGGGCATCGAACAGGTAGAGAACCTGCTGCAGCTCAATGCCCAACTGGTGGAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGACGTGACCCTGGCGGCGGTGATc                                                                                                                     <  5:173631/149‑1 (MQ=255)
                          gCAGCTGGCCGAGGACGTGGCCCGTGCTACCCGGGGCATCGAACAGGTAGAGAACCTGCTGCAGCTCAATGCCCAACTGGTGGAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGACGTGACCCTGGCGGCGGTGATcc                                                                                                                    >  1:128924/1‑149 (MQ=255)
                            aGCTGGCCGAGGACGTGGCCCGTGCTACCCGGGGCATCGAACAGGGAGAGAACCTGCTGCAGCTCAATGCCCAACTGGTGGAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGACGTGACCCTGGCGGCGGTGATCCGt                                                                                                                  >  3:36948/1‑149 (MQ=255)
                              cTGGCCGAGGACGTGGCCCGTGCTACCCGGGGCATCGAACAGGTAGAGAACCTGCTGCAGCTCAATGCCCAACTGGTGGAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGACGTGACCCTGGCGGCGGTGATCCGTGc                                                                                                                <  4:172908/149‑1 (MQ=255)
                                  ccGAGGACGTGGCCCGTGCTACCCGGGGCATCGAACAGGTAGAGAACCTGCTGCAGCTCAATGCCCAACTGGTGGAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGACGTGACCCTGGCGGCGGTGATCCGTGCTCgg                                                                                                            <  3:278930/149‑1 (MQ=255)
                                    gAGGACGTGGCCCGTGCTACCCGGGGCATCGAACAGGTAGAGAACCTGCTGCAGCTCAATGCCCAACTGGTGGAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGACGTGACCCTGGCGGCGGTGATCCGTGCTCGGCt                                                                                                          <  3:271035/149‑1 (MQ=255)
                                          gTGGCCCGTGCTACCCGGGGCATCGAACAGGTAGAGAACCTGCTGCAGCTCAATGCCCAACTGGTGGAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGACGTGACCCTGGCGGCGGTGATCCGTGCTCGGCTGTtgtg                                                                                                    <  4:254531/149‑1 (MQ=255)
                                            ggCCCGTGCTACCCGGGGCATCGAACAGGTAGAGAACCTGCTGCAGCTCAATGCCCAACTGGTGGAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGACGTGACCCTGGCGGCGGTGATCCGTGCTCGGCTGTtgtg                                                                                                    >  3:262021/1‑147 (MQ=255)
                                             gCCCGTGCTACCCGCGGCATCGAACAGGTAGAGAACCTGCTGCAGCTCAATGCCCAACTGGTGGAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGAAGTGACCCTCGCGGCGGTGATCCGTGCACGGCTGTTGTGCAg                                                                                                 >  6:3502/1‑149 (MQ=255)
                                               ccGTGCTACCCGGGGCATCGAACAGGTAGAGAACCTGCTGCAGCTCAATGCCCAACTGGTGGAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGACGTGACCCTGGCGGCGGTGATCCGTGCTCGGCTGTTGTGGAGcc                                                                                               >  6:261598/1‑149 (MQ=255)
                                                        ccGGGGCATCGAACAGGTAGAGAACCTGCTGCAGCTCAATGCCCAACTGGTGGAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGACGTGACCCTGGCGGCGGTGATCCGTGCTCGGCTGTTGTGGAGCCGTACCACCg                                                                                      <  4:262021/149‑1 (MQ=255)
                                                            ggCATCGAACAGGTAGAGAACCTGCTGCAGCTCAATGCCCAACTGGTGGAGCGTCCGGAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGACGTGACCCTGGCGGCGGTGATCCGTGCTCGGCTGTTGTGGAGCCGTACCACCGaaaa                                                                                  <  7:268925/149‑1 (MQ=255)
                                                             gCATCGAACAGGTAGAGAACCTGCTGCAGCTCAATGCCCAACTGGTGGAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGACGTGACCCTGGCGGCGGTGATCCGTGCTCGGCTGTTGTGGAGCCGTACCACCGAAAAg                                                                                 <  8:115268/149‑1 (MQ=255)
                                                                  gAACAGGTAGAGAACCTGCTGCAGCTCAATGCCCAACTGGTGGAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGACGTGACCCTGGCGGCGGTGATCCGTGCTCGGCTGTTGTGGAGCCGTACCACCGAAAAGGCAcc                                                                            >  4:196580/1‑149 (MQ=255)
                                                                  gAACAGGTAGAGAACCTGCTGCAGCTCAATGCCCAACTGGTGGAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGACGTGACCCTGGCGGCGGTGATCCGTGCTCGGCTGTTGTGGAGCCGTACCACCGAAAAGGCAc                                                                             <  1:302792/148‑1 (MQ=255)
                                                                        gTAGAGAACCTGCTGCAGCTCAATGCCCAACTGGTGGAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGACGTGACCCTGGCGGCGGTGATCCGTGCTCGGCTGTTGTGGAGCCGTACCACCGAAAAGGCACCTATAg                                                                       >  6:30792/1‑148 (MQ=255)
                                                                           gagaACCTGCTGCAGCTCAATGCCCAACTGGTGGAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGACGTGACCCTGGCGGCGGTGATCCGTGCTCGGCTGTTGTGGAGCCGTACCACCGAAAAGGCACCTATAGAAGt                                                                   <  8:19926/149‑1 (MQ=255)
                                                                                         gCTCAATGCCCAACTGGTGGAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGACGTGACCCTGGCGGCGGTGATCCGTGCTCGGCTGTTGTGGAGCCGTACCACCGAAAAGGCACCTATAGAAGTACAGAGCAGCGAgg                                                     <  7:229557/149‑1 (MQ=255)
                                                                                         gCTAAATGCCCTTCTGGTGGAGCGTCCGCAGGAGCTGCGTGCCTTCGCCCAGCGGCTGGAGGACGTGACCCTGGCGGCGGTGATCCGTGCTCGGCTGTTGTGGAGCGGTACCACCGAAAAGGCACCTATAGAAGTACAGAGCAGCGAgg                                                     <  3:108718/149‑1 (MQ=255)
                                                                                          cTCAATGCCCAACTGGTGGAGCGTCCGCAGGATCTGCGTGCCTACGCCCAGCGCCTGGATGACGTGACCCTGGCGGCGGTTATCCGTGCTCGGCTGTTGTGGAGCCGTACCACCGAAAAGGCACCTATAGAAGTACAGAGCAGCGAg                                                      <  5:3502/147‑1 (MQ=255)
                                                                                             aaTGCCCAACTGGTGGAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGACGTGACCCTGGCGGCGGTGATCCGTGCTCGGCTGTTGTGGAGCCGTACCACCGAAAAGGCACCTATAGAAGTACAGAGCAGCGAGGgt                                                   <  3:196580/147‑1 (MQ=255)
                                                                                              aTGCCCAACTGGTGGAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGACGTGACCCTGGCGGCGGTGATCCGTGCTCGGCTGTTGTGGAGCCGTACCACCGAAAAGGCACCTATAGAAGTACAGAGCAGCGAGGGtgtg                                                <  5:261598/149‑1 (MQ=255)
                                                                                                  ccAACTGGTGGAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGACGTGACCCTGGCGGCGGTGATCCGTGCTCGGCTGTTGTGGAGCCGTACCACCGAAAAGGCACCTATAGAAGTACAGAGCAGCGAGGGTGTGGTGa                                            >  5:109466/1‑149 (MQ=255)
                                                                                                       tggtggAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGACGTGACACTGGCGGCGGTGATCCGTGCTCGGCTGTTGTGGAGCCGTACCACCGAAAATGCACCTATAGAAGTACAGAGCAGCGAGGGTGTGGTGACGTTg                                       >  6:186828/1‑149 (MQ=255)
                                                                                                       tggtggAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGACGTGACACTGGCGGCGGTGATCCGTGCTCGGCTGTTGTGGAGCCGTACCACCGAAAAGGCACCTATAGAAGTACAGAGCAGCGAGGGTGTGGTGACGTTg                                       >  6:306573/1‑149 (MQ=255)
                                                                                                       tggtggAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGACGTGACACTGGCGGCGGTGATCCGTGCTCGGCTGTTGTGGAGCCGTACCACCGAAAAGGCACCTATAGAAGTACAGAGCAGCGAGGGTGTGGTGACGTTg                                       >  6:191336/1‑149 (MQ=255)
                                                                                                         gtggAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAggacgctccaccagttgggcattgagctgcagcaggttctctacctgttcgatgccccgggtagcacgggccacgtcctcggccagctgccgctcgacctcgttc                                     <  2:60411‑M2/149‑106 (MQ=255)
                                                                                                         gtggAGCGTCCCCAGGAGCAGCGTGCCTACCCCCAGCGCCTGGAGGACGTGACCCTGGCGGCGGAGATCCGTGCTCGGCTGTTGTGGAGCCGTACCACCCAAAAGGCACCTATAGAAGTACAGAGCAGCGAGGGTGTGGTGCCGTTgag                                     >  2:35759/1‑147 (MQ=255)
                                                                                                          tggAGCGTCCGCGGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGACGTGACCCTGGCGGCGGTGATCCGTGCTCGGCTGTTGTGGAGCCGTACCACCGAAAAGGCACCTATAGAAGTACAGAGCAGCGAGGGTGTGGTGACGTTGCGt                                    >  8:299365/1‑149 (MQ=255)
                                                                                                            gAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAggacgctccaccagttgggcattgagctgcagcaggttctctacctgttcgatgccccgggtagcacgggccacgtcctcggccagctgccgctcgacctcgttctc                                   <  6:21542‑M2/148‑108 (MQ=255)
                                                                                                              gCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAggacgctccaccagttgggcattgagctgcagcaggttctctacctgttcgatgccccgggtagcacgggccacgtcctcggccagctgccgctcgacctcgttctccac                                >  1:60411‑M2/1‑39 (MQ=255)
                                                                                                                gTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGACGTGACCCTGGCGGCGGTGATCCGTGCTCGGCTGTTGTGGAGCCGTACCACCGAAAAGGCACCTATAGAAGTACAGAGCAGCGAGGGTGTGGTGACGTTGCGTGGCAAg                              <  5:30792/149‑1 (MQ=255)
                                                                                                                    gCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGACGTGACCCTGGCGGCGGTGATCCGTGCTCGGCTGTTGTGGAGACGTACAACCGATAAGGGACCTATAGAAGTAAAGAGCAGCGAGGGTGTGGTGACGTTGCGTGGCAAGGTc                           >  1:265895/1‑148 (MQ=255)
                                                                                                                     cAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGACGTGACCCTGGCGGCGGTGATCCGTGCTCGGCTGTTGTGGAGCCGTACCACCGAAAAGGCACCTATAGAAGTACAGAGCAGCGAGGGTGTGGTGACGTTGc                                      >  3:138686/1‑136 (MQ=255)
                                                                                                                     cAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGACGTGACCCTGGCGGCGGTGATCCGTGCTCGGCTGTTGTGGAGCCGTACCACCGAAAAGGCACCTATAGAAGTACAGAGCAGCGAGGGTGTGGTGACGTTGc                                      <  4:138686/136‑1 (MQ=255)
                                                                                                                     cAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGACGTGACACTGGCGGCGGTGATCCGTGCTCGGCTGTTGTGGAGCCGTACCACCGAAAAGGCACCTATAGAAGTACAGAGCAGCGAGGGTGTGGTGACGTTGCGTGGCAAGGTCGa                         <  5:306573/149‑1 (MQ=255)
                                                                                                                     cAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGACGTGACACTGGCGGCGGTGATCCGTGCTCGGCTGTTGTGGAGCCGTACCACCGAAAAGGCACCTATAGAAGTACAGAGCAGCGAGGGTGTGGTGACGTTGCGTGGCAAGGTCGa                         <  5:191336/149‑1 (MQ=255)
                                                                                                                     cAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGACGTGACACTGGCGGCGGTGATCCGTGCTCGGCTGTTGTGGAGCCGTACCACCGAAAAGGCACCTATAGAAGTACAGAGCAGCGAGGGTGTGGTGACGTTGCGTGGCAAGGTCGa                         <  5:186828/149‑1 (MQ=255)
                                                                                                                            tGCGTGCCTACGCCCAGCGCCTGGAGGACGTGACCCTGGCGGCGGTGATCCGTGCTCGGCTGTTGTGGAGCCGTACCACCGAAAAGGCACCTATAGAAGTACAGAGCAGCGAGGGTGTGGTGACGTTGCGTGGCAAGGTCGACAGAGcc                  >  4:98090/1‑149 (MQ=255)
                                                                                                                              cGTGCCTACGCCCAGCGCCTGGAGGACGTGACCCTGGCGGCGGTGATCCGTGCTCGGCTGTTGTGGAGCCGTACCACCGAAAAGGCACCTATAGAAGTACAGAGCAGCGAGGGTGTGGTGACGTTGCGTGGCAAGGTCGACAGTGcc                  <  8:248085/147‑1 (MQ=255)
                                                                                                                                   cTACGCCCAGCGCCTGGAGGACGTGACCCTGGCGGCGGTGATCCGTGCTCGGCTGTTGTGGAGCCGTACCACCGAAAAGGCACCTATAGAAGTACAGAGCAGCGAGGGTGTGGTGACGTTGCGTGGCAAGGTCGACAGTGCCGAAGcc            >  1:259285/1‑148 (MQ=255)
                                                                                                                                   cTACGCCCAGCGCCTGGAGGACGTGACCCTGGCGGCGGTGATCCGTGCTCGGCTGTTGTGGAGCCGTACCACCGAAAAGGCACCTATAGAAGTACAGAGCAGCGAGGGTGTGGTGACGTTGCGTGGCAAGGTCGACAGTGCCGAAGcc            >  3:181036/1‑148 (MQ=255)
                                                                                                                                    tACGCCCAGCGCCTGGAGGACGTGACCCTGGCGGCGGTGATCCGTGCTCGGCTGTTGTGGAGCCGTACCACCGAAAAGGCACCTATAGAAGTACAGAGCAGCGAGGGTGTGGTGACGTTGCGTGGCAAGGTCGACAGTGCCGAAGcc            >  7:57746/1‑147 (MQ=255)
                                                                                                                                       gCCCAGCGCCTGGAGGACGTGACCCTGGCGGCGGTGATCCGTGCTCGGCTGTTGTGGAGCCGTACCACCGAAAAGGCACCTATAGAAGTACAGAGCAGCGAGGGTGTGGTGACGTTGCGTGGCAAGGTCGACAGTGCCGAAGCCAAg         >  3:171942/1‑147 (MQ=255)
                                                                                                                                         ccAGCGCCTGGAGGACGTGACCCTGGCGGCGGTGATCCGTGCTCGGCTGTTGTGGAGCCGTACCACCGAAAAGGCACCTATAGAAGTACAGAGCAGTGAGGGTGTGGTGACGTTGCGTGGCAAGGTCGACAGTGCCGAAGCCAAGGAGc     >  7:126870/1‑149 (MQ=255)
                                                                                                                                         ccAGCGCCTGGAGGACGTGACCCTGGCGGCGGTGATCCGTGCTCGGCTGTTGTGGAGCCGTACCACCGAAAAGGCACCTATAGAAGTACAGAGCAGCGAGGGTGTGGTGACGTTGCGTGGCAAGGTCGACAGTGCCGAAGCCAAGGAGc     >  2:273087/1‑149 (MQ=255)
                                                                                                                                            gcgcCTGGAGGACGTGACCCTGGCGGCGGTGATCCGTGCTCGGCTGTTGTGGAGCCGTACCACCGAAAAGGCACCTATAGAAGTACAGAGCAGCGAGGGTGTGGTGACGTTGCGTGGCAAGGTCGACAGTGCCGAAGCCAAGGAGCTgg  <  4:36948/149‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                            
GGTGAGGTGGAGAACGAGGTCGAGCGGCAGCTGGCCGAGGACGTGGCCCGTGCTACCCGGGGCATCGAACAGGTAGAGAACCTGCTGCAGCTCAATGCCCAACTGGTGGAGCGTCCGCAGGAGCTGCGTGCCTACGCCCAGCGCCTGGAGGACGTGACCCTGGCGGCGGTGATCCGTGCTCGGCTGTTGTGGAGCCGTACCACCGAAAAGGCACCTATAGAAGTACAGAGCAGCGAGGGTGTGGTGACGTTGCGTGGCAAGGTCGACAGTGCCGAAGCCAAGGAGCTGG  >  NC_002947/142243‑142531

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.