New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 346908	33 (0.630)	3 (0.060)	3/254	NT	7.9%	coding (938/2247 nt)	PP_0287	hypothetical protein
	?	NC_002947	= 346932	38 (0.760)					coding (914/2247 nt)	PP_0287	hypothetical protein

CAGGTCTTCCAGGGCCAGGCTGCTGGGTGTGCCCAGCAGGCGAGTCACCAGCTCCAGCTTGGCGAAGGCGGC‑‑‑‑CGGGTCGTTGGTGGCCGGCAGCGGGTGGCCAATGCTTTCAAGGAAGGCGCGCAGGTTGAACTGGGCGATGGACAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCAGATCACGCAGGTTCAGCTCACCGAGGGCGCGCAGTTGGTTGGCCGAGACTTTCAGGCCGTTCCATGAGGCGACATTGGCGGCCAGGTCGACCAGCAGTTGGCCTTGGGCGGCGAAG  >  NC_002947/346763‑347054                                                                                                                                                      |                                                                                                                                                    cAGGTCTTCCAGGGCCAGGCTGCTGGGTGTGCCCAGCAGGCGAGTCACCAGCTCCAGCTTGGCGAAGGCGGC‑‑‑‑CGGGTCGTTGGTGGCCGGCAGCGGGTGGCCAATGCTTTCAAGGAAGGCGCGCAGGTTGAACTGGGCGATGGACAGgc                                                                                                                                                  <  5:85351/149‑1 (MQ=255)  aGGTCTTCCATGGCCAGGCTGCTGGGTGTGCCCAGCAGGCGTTTCACCATCTTCAGCTTTTCGTAGGCCGCGTTTCGGGTCGTTGGTGGCCGGCAGCGGGTGGCCAATGCTTTCAAGGAAGGCGCGCAGGTTGAACTGGGCGATGGACa                                                                                                                                                     <  1:104832/149‑1 (MQ=255)   ggTCTTCCAGGGCCAGGCTGCTGGGTGTGCCCAGCAGGCGAGTCACCAGCTCCAGCTTGGCGAAGGCGGC‑‑‑‑CGGGTCGTTGGTGGCCGGCAGCGGGTGGCCAATGCTTTCAAGGAAGGCGCGCAGGTTGAACTGGGCGATGGACAGgcc‑g                                                                                                                                               >  1:245229/1‑149 (MQ=255)            gggCCAGGCTGCTGGGTGTGCCCAGCAGGCGAGTCACCAGCTCCAGCTTGGCGAAGGCGGC‑‑‑‑CGGGTCGTTGGTGGCCGGCAGCGGGTGGCCAATGCTTTCAAGGAAGGCGCGCAGGTTGAACTGGGCGATGGACAGGCC‑GCCGCTCAGc                                                                                                                                      >  4:295485/1‑149 (MQ=255)             ggCCAGGCTGCTGGGTGTGCCCAGCAGGCGAGTCACCAGCTCCAGCTTGGCGAAGGCGGC‑‑‑‑CGGGTCGTTGGTGGCCGGCAGCGGGTGGCCAATGCTTTCAAGGAAGGCGCGCAGGTTGAACTGGGCGATGGACAGGCC‑GCCGCTCAGCt                                                                                                                                     >  2:308981/1‑149 (MQ=255)                           gtgtGCCCAGCAGGCGAGTCACCAGCTCCAGCTTGGCGAAGGCGGC‑‑‑‑CGGGTCGTTGGTGGCCGGCAGCGGGTGGCCAATGCTTTCAAGGAAGGCGCGCAGGTTGAACTGGGCGATGGACAGGCCCGCCGCTCAGCTGGGGTGCCTtgtc                                                                                                                        >  1:3093‑M2/1‑145 (MQ=255)                              tgCCCAGCAGGCGAGTCACCAGCTCCAGCTTGGCGAAGGCGGC‑‑‑‑CGGGTCGTTGGTGGCCGGCAGCGGGTGGCCAATGCTTTCAAGGAAGGCGCGCAGGTTGAACTGGGCGATGGACAaggcaccccagctgagcggcggcctgtccatc                                                                                                                     <  5:133809‑M1/149‑33 (MQ=255)                                cccAGCAGGCGAGTCACCAGCTCCAGCTTGGCGAAGGCGGC‑‑‑‑CGGGTCGTTGGTGGCCGGCAGCGGGTGGCCAATGCTTTCAAGGAAGGCGCGCAGGTTGAACTGGGCGATGGACAaggcaccccagctgagcggcggcctgtccatcgc                                                                                                                   >  1:283265‑M1/1‑115 (MQ=255)                                cccAGCAGGCGAGTCACCAGCTCCAGCTTGGCGAAGGCGGC‑‑‑‑CGGGTCGTTGGTGGCCGGCAGCGGGTGGCCAATGCTTTCAAGGAAGGCGCGCAGGTTGAACTGGGCGATGGACAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCAGATc                                                                                                                  <  1:70526/149‑1 (MQ=255)                                  cagcagGCGAGTCACCAGCTCCAGCTTGGCGAAGGCGGC‑‑‑‑CGGGTCGTTGGTGGCCGGCAGCGGGTGGCCAATGCTTTCAAGGAAGGCGCGCAGGTTGAACTGGGCGATGGACAaggcaccccagctgagcggcggcctgtccatcgccc                                                                                                                 <  2:283265‑M1/149‑37 (MQ=255)                                   agcagGCGAGTCACCAGCTCCAGCTTGGCGAAGGCGGC‑‑‑‑CGGGTCGTTGGTGGCCGGCAGCGGGTGGCCAATGCTTTCAAGGAAGGCGCGCAGGTTGAACTGGGCGATGGACAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCAGATCACg                                                                                                               <  4:97073/149‑1 (MQ=255)                                    gcagGCGAGTCACCAGCTCCAGCTTGGCGAAGGCGGC‑‑‑‑CGGGTCGTTGGTGGCCGGCAGCGGGTGGCCAATGCTTTCAAGGAAGGCGCGCAGGTTGAACTGGGCGATGGACAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCAGATCACGc                                                                                                              <  5:232311/149‑1 (MQ=255)                                     cagGCGAGTCACCAGCTCCAGCTTGGCGAAGGCGGC‑‑‑‑CGGGTCGTTGGTGGCCGGCAGCGGGTGGCCAATGCTTTCAAGGAAGGCGCGCAGGTTGAACTGGGCGATGGACAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCAGATCACg                                                                                                               >  8:109745/1‑147 (MQ=255)                                        gCGAGTCACCAGCTCCAGCTTGGCGAAGGCGGC‑‑‑‑CGGGTCGTTGGTGGCCGGCAGCGGGTGGCCAATGCTTTCAAGGAAGGCGCGCAGGTTGAACTGGGCGATGGACAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCAGATCACGCAGGt                                                                                                          >  6:102915/1‑149 (MQ=255)                                         cGAGTCACCAGCTCCAGCTTGGCGAAGGCGGC‑‑‑‑CGGGTCGTTGGTGGCCGGCAGCGGGTGGCCAATGCTTTCAAGGAAGGCGCGCAGGTTGAACTGGGCGATGGACAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCAGATCACGCAGGtt                                                                                                         <  2:245229/149‑1 (MQ=255)                                            gTCACCAGCTCCAGCTTGGCGAAGGCGGC‑‑‑‑CGGGTCGTTGGTGGCCGGCAGCGGGTGGCCAATGCTTTCAAGGAAGGCGCGCAGGTTGAACTGGGCGATGGACAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCAGa                                                                                                                    >  6:240316/1‑135 (MQ=255)                                            gTCACCAGCTCCAGCTTGGCGAAGGCGGC‑‑‑‑CGGGTCGTTGGTGGCCGGCAGCGGGTGGCCAATGCTTTCAAGGAAGGCGCGCAGGTTGAACTGGGCGATGGACAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCAGa                                                                                                                    <  5:240316/135‑1 (MQ=255)                                            gTCACCAGCTCCAGCTTGGCGAAGGCGGC‑‑‑‑CGGGTCGTTGGTGGCCGGCAGCGGGTGGCCAATGCTTTCAAGGAAGGCGCGCAGGTTGAACTGGGCGATGGACAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCAGATCACGCAGGTTCAg                                                                                                      <  5:102915/149‑1 (MQ=255)                                               aCCAGCTCCAGCTTGGCGAAGGCGGC‑‑‑‑CGGGTCGTTGGTGGCCGGCAGCGGGTGGCCAATGCTTTCAAGGAAGGCGCGCAGGTTGAACTGGGCGATGGACAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCAGATCACGCAGGTTCAGCt                                                                                                    >  3:249725/1‑148 (MQ=255)                                                    ctccagctTGGCGAAGGCGGC‑‑‑‑CGGGTCGTTGGTGGCCGGCAGCGGGTGGCCAATGCTTTCAAGGAAGGCGCGCAGGTTGAACTGGGCGATGGACAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCAGATCACGCAGGTTCAGCTCAcc                                                                                                >  5:132476/1‑147 (MQ=255)                                                       cagctTGGCGAAGGCGGC‑‑‑‑CGGGTCGTTGGTGGCCGGCAGCGGGTGGCCAATGCTTTCAAGGAAGGCGCGCAGGTTGAACTGGGCGATGGACAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCAGATCACGCAGGTTCAGCTCACCGAgg                                                                                            <  2:113852/148‑1 (MQ=255)                                                       cagctTGGCGAAGGCGGC‑‑‑‑CGGGGCGTTGGTGGCCGGCAGCGGGTGGCCAATGCTTTCAAGGAAGGCGCGCAGGTTGAACTGGGCGATGGACAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCAGATCACGCAGGTTCAGCTCACCGAgg                                                                                            <  6:197366/148‑1 (MQ=255)                                                               cGAAGGCGGC‑‑‑‑CGGGTCGTTGGTGACCGGCAGCGGGTGGCCAATGCTTTCAAGGAAGGCGCGCAGGTTGAACTGGGCGATGGACAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCAGATCACGCAGGTTCAGCTCACCGAGGGCGCGCAgt                                                                                   >  2:175043/1‑149 (MQ=255)                                                                 aaGGCGGC‑‑‑‑CGGGTCGTTGGTGGCCGGCAGCGGGTGGCCAATGCTTTCAAGGAAGGCGCGCAGGTTGAACTGGGCGATGGACAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCAGATCACGCAGGTTCAGCTCACCGAGGGCGCGCAgttg                                                                                 >  3:242481/1‑149 (MQ=255)                                                                   ggcggc‑‑‑‑CGGGTCGTTGGTGGCCGGCAGCGGGTGGCCAATGCTTTCAAGGAAGGCGCGCAGGTTGAACTGGGCGATGGACAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCAGATCACGCAGGTTCAGCTCACCGAGGGCGCGCAgttggt                                                                               <  1:190019/149‑1 (MQ=255)                                                                    gcggc‑‑‑‑CGGGTCGTTGGTGGCCGGCAGCGGGTGGCCAATGCTTTCAAGGAAGGCGCGCAGGTTGAACTGGGCGATGGACAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCAGATCACGCAGGTTCAGCTCACCGAGGGCGCGCAgttggtt                                                                              <  4:242481/149‑1 (MQ=255)                                                                       gc‑‑‑‑CGGGTCGTTGGTGGCCGGCAGCGGGTGGCCAATGCTTTCAAGGAAGGCGCGCAGGTTGAACTGGGCGATGGACAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCAGATCACGCAGGTTCAGCTCACCGAGGGCGCGCAGTTGGTTGGc                                                                           >  5:226795/1‑149 (MQ=255)                                                                              gggTCGTTGGTGGCCGGCAGCGGGTGGCCAATGCTTTCAAGGAAGGCGCGCAGGTTGAACTGGGCGATGGACAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCAGATCACGCAGGTTCAGCTCACCGAGGGCGCGCAGTTGGTTGGCCga                                                                        <  4:138802/149‑1 (MQ=255)                                                                                gTCGTTGGGGGCCGGCAGCGGGTGGCCAATGCTTTCAAGGAAGGCGCGCAGGTTGAACTGGGCGATGGACAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCAGATCACGCAGGTTCAGCTCACCGAGGGCGCGCAGTTGGTTGGCCgaga                                                                      <  6:226795/149‑1 (MQ=255)                                                                                       gtggCCGGCAGCGGGTGGCCAATGCTTTCAAGGAAGGCGCGCAGGTTGAACTGGGCGATGGACAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCATATCACGCAGGTTCAGCTCACCGAGGGCGCGCAGTTGGTTGGCCGAGACTTTCa                                                                <  1:249075/148‑1 (MQ=255)                                                                                                 gCGGGTGGCCAATGCTTTCAAGGAAGGCGCGCAGGTTGAACTGGGCGATGGACAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCAGATCACGCAGGTTCAGCTCACCGAGGGCGCGCAGTTGGTTGGCCGAGACTTTCAGGCCGTTCCAt                                                     >  1:320413/1‑149 (MQ=255)                                                                                                   gggTGGCCAATGCTTTCAAGGAAGGCGCGCAGGTTGAACTGGGCGATGGACAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCAGATCACGCAGGTTCAGCTCACCGAGGGCGCGCAGTTGGTTGGCCGAGACTTTCAGGCCGTTCCAt                                                     >  5:309184/1‑147 (MQ=255)                                                                                                   gggTGGCCAATGCTTTCAAGGAAGGCGCGCAGGTTGAACTGGGCGATGGACAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCAGATCACGCAGGTTCAGCTCACCGAGGGCGCGCAGTTGGTTGGCCGAGACTTTCAGGCCGTTCCATGa                                                   <  4:171274/149‑1 (MQ=255)                                                                                                            aTGCTTTCAAGGAAGGCGCGCAGGTTGAACTGGGCGATGGACAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCAGATCACGCAGGTTCAGCTCACCGAGGGCGCGCAGTTGGTTGGCCGAGACTTTCAGGCCGTTCCATGAGGCGACAtt                                          <  2:320413/149‑1 (MQ=255)                                                                                                            aTGCTTTCAAGGAAGGCGCGCAGGTTGAACTGGGCGATGGACAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCAGATCACGCAGGTTCAGCTCACCGAGGGCGCGCAGTTGGTTGGCCGAGACTTTCAGGCCGTTCCATGAGGCGACAtt                                          >  2:199839/1‑149 (MQ=255)                                                                                                             tGCTTTCAAGGAAGGCGCGCAGGTTGAACTGGGCGATGGACAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCAGATCACGCAGGTTCAGCTCACCGAGGGCGCGCAGTTGGTTGGCCGAGACTTTCAGGCCGTTCCATGAGGCGACATTg                                         >  3:155998/1‑149 (MQ=255)                                                                                                               cTTTCAAGGAAGGCGCGCAGGTTGAACTGGGCGATGGACAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCAGATCACGCAGGTTCAGCTCACCGAGGGCGCGCAGTTGGTTGGCCGAGACTTTCAGGCCGTTCCATGAGGc                                                >  7:70809/1‑140 (MQ=255)                                                                                                               cTTTCAAGGAAGGCGCGCAGGTTGAACTGGGCGATGGACAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCAGATCACGCAGGTTCAGCTCACCGAGGGCGCGCAGTTGGTTGGCCGAGACTTTCAGGCCGTTCCATGAGGc                                                <  8:70809/140‑1 (MQ=255)                                                                                                                   cAAGGAAGGCGCGCAGGTTGAACTGGGCGATGGACAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCAGATCACGCAGGTTCAGCTCACCGAGGGCGCGCAGTTGGTTGGCCGAGACTTTCAGGCCGTTCCATGAGGCGACATTggcggc                                    <  7:109745/148‑1 (MQ=255)                                                                                                                                          tGGGCGATGGACAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCAGATCACGCAGGTTCAGCTCACCGAGGGCGCGCAGTTGGTTGGCCGAGACTTTCAGGCCGTTCCATGAGGCGACATTGGCGGCCAGGTCGACCAGCAGTTGGCCTTg            >  6:45017/1‑149 (MQ=255)                                                                                                                                           gggCGATGGACAGGCC‑GCCGCTCAGCTGGGGTGCCTtgtccatcgcccagttcaacctgcgcgccttccttgaaagcattggccacccgctgccggccaccaacgacccggccgccttcgccaagctggagctggtgactcgcctgctg           <  2:283265‑M2/149‑114 (MQ=255)                                                                                                                                             gCGATGGACAGGCC‑GCCGCTCAGCTGGGGTGCCTtgtccatcgcccagttcaacctgcgcgccttccttgaaagcattggccacccgctgccggccaccaacgacccggccgccttcgccaagctggagctggtgactcgcctgctggg         >  1:283265‑M2/1‑34 (MQ=255)                                                                                                                                               gATGGACAGGCC‑GCCGCTCAGCTGGGGTGCCTtgtccatcgcccagttcaacctgcgcgccttccttgaaagcattggccacccgctgccggccaccaacgacccggccgccttcgccaagctggagctggtgactcgcctgctgggca       <  5:133809‑M2/149‑118 (MQ=255)                                                                                                                                                   gACAaggcaccccagctgagcggcgggcctgtccatcgcccagttcaacctgcgcgccttccttgaaagcattggccacccgctgccggccaccaacgacccggccgccttcgccaagctggagctggtgactcgcctgctgggcacac    >  1:3093‑M1/1‑4 (MQ=255)                                                                                                                                                   gACAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCAGATCACGCAGGTTCAGCTCACCGAGGGCGCGCAGTTGGTTGGCCGAGACTTTCAGGCCGTTCCATGAGGCGACATTGGCGGCCAGGTCGACCAGCAGTTGGCCTTGGgcggcg     >  4:93501/1‑147 (MQ=255)                                                                                                                                                   gACAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCAGATCACGCAGGTTCAGCTCACCGAGGGCGCGCAGTTGGTTGGCCGAGACTTTCAGGCCGTTCCATGAGGCGACATTGGCGGCCAGGTCGACCAGCAGTTGGCCTTGGGCGGCGaa   <  3:295485/149‑1 (MQ=255)                                                                                                                                                   gACAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCAGATCACGCAGGTTCAGCTCACCGAGGGCGCGCAGTTGGTTGGCCGAGACTTTCAGGCCGTTCCATGAGGCGACATTGGCGGCCAGGTCGACCAGCAGTTGGCCTTGGGCGGCGaa   <  6:132476/149‑1 (MQ=255)                                                                                                                                                    aCAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCAGATCACGCAGGTTCAGCTCACCGAGGGCGCGCAGTTGGTTGGCCGAGACTTTCAGGCCGTTCCATGAGGCGACATTGGCGGCCAGGTCGACCAGCAGTTGGCCTTGGGCGGCGAAg  >  2:87196/1‑149 (MQ=255)                                                                                                                                                    aCAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCAGATCACGCAGGTTCAGCTCACCGAGGGCGCGCAGTTGGTTGGCCGAGACTTTCAGGCCGTTCCATGAGGCGACATTGGCGGCCAGGTCGACCAGCAGTTGGCCTTGGGCGGCGAAg  >  7:20060/1‑149 (MQ=255)                                                                                                                                                      |                                                                                                                                                    CAGGTCTTCCAGGGCCAGGCTGCTGGGTGTGCCCAGCAGGCGAGTCACCAGCTCCAGCTTGGCGAAGGCGGC‑‑‑‑CGGGTCGTTGGTGGCCGGCAGCGGGTGGCCAATGCTTTCAAGGAAGGCGCGCAGGTTGAACTGGGCGATGGACAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCAGATCACGCAGGTTCAGCTCACCGAGGGCGCGCAGTTGGTTGGCCGAGACTTTCAGGCCGTTCCATGAGGCGACATTGGCGGCCAGGTCGACCAGCAGTTGGCCTTGGGCGGCGAAG  >  NC_002947/346763‑347054

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.