New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 346908	33 (0.630)	3 (0.060)	3/254	NT	7.9%	coding (938/2247 nt)	PP_0287	hypothetical protein
	?	NC_002947	= 346932	38 (0.760)					coding (914/2247 nt)	PP_0287	hypothetical protein

GTGTGCCCAGCAGGCGAGTCACCAGCTCCAGCTTGGCGAAGGCGGCCGGGTCGTTGGTGGCCGGCAGCGGGTGGCCAATGCTTTCAAGGAAGGCGCGCAGGTTGAACTGGGCGATGGACAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCAGATCACGCAGGTTCAGCTCACCGAGGGCGCGCAGTTGGTTGGCCGAGACTTTCAGGCCGTTCCATGAGGCGACATTGGCGGCCAGGTCGACCAGCAGTTGGCCTTGGGCGGCGAAGGTCACGGTCTTGCCGCCGGTAGGCTC  >  NC_002947/346789‑347080                                                                                                                                                 |                                                                                                                                                     gtgtGCCCAGCAGGCGAGTCACCAGCTCCAGCTTGGCGAAGGCGGCCGGGTCGTTGGTGGCCGGCAGCGGGTGGCCAATGCTTTCAAGGAAGGCGCGCAGGTTGAACTGGGCGATGGACAGGCCCGCCGCTCAGCTGGGGTGCCTtgtc                                                                                                                                                  >  1:3093‑M2/1‑145 (MQ=255)      cccAGCAGGCGAGTCACCAGCTCCAGCTTGGCGAAGGCGGCCGGGTCGTTGGTGGCCGGCAGCGGGTGGCCAATGCTTTCAAGGAAGGCGCGCAGGTTGAACTGGGCGATGGACAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCAGATc                                                                                                                                            <  1:70526/149‑1 (MQ=255)         agcagGCGAGTCACCAGCTCCAGCTTGGCGAAGGCGGCCGGGTCGTTGGTGGCCGGCAGCGGGTGGCCAATGCTTTCAAGGAAGGCGCGCAGGTTGAACTGGGCGATGGACAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCAGATCACg                                                                                                                                         <  4:97073/149‑1 (MQ=255)          gcagGCGAGTCACCAGCTCCAGCTTGGCGAAGGCGGCCGGGTCGTTGGTGGCCGGCAGCGGGTGGCCAATGCTTTCAAGGAAGGCGCGCAGGTTGAACTGGGCGATGGACAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCAGATCACGc                                                                                                                                        <  5:232311/149‑1 (MQ=255)           cagGCGAGTCACCAGCTCCAGCTTGGCGAAGGCGGCCGGGTCGTTGGTGGCCGGCAGCGGGTGGCCAATGCTTTCAAGGAAGGCGCGCAGGTTGAACTGGGCGATGGACAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCAGATCACg                                                                                                                                         >  8:109745/1‑147 (MQ=255)              gCGAGTCACCAGCTCCAGCTTGGCGAAGGCGGCCGGGTCGTTGGTGGCCGGCAGCGGGTGGCCAATGCTTTCAAGGAAGGCGCGCAGGTTGAACTGGGCGATGGACAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCAGATCACGCAGGt                                                                                                                                    >  6:102915/1‑149 (MQ=255)               cGAGTCACCAGCTCCAGCTTGGCGAAGGCGGCCGGGTCGTTGGTGGCCGGCAGCGGGTGGCCAATGCTTTCAAGGAAGGCGCGCAGGTTGAACTGGGCGATGGACAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCAGATCACGCAGGtt                                                                                                                                   <  2:245229/149‑1 (MQ=255)                  gTCACCAGCTCCAGCTTGGCGAAGGCGGCCGGGTCGTTGGTGGCCGGCAGCGGGTGGCCAATGCTTTCAAGGAAGGCGCGCAGGTTGAACTGGGCGATGGACAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCAGa                                                                                                                                              >  6:240316/1‑135 (MQ=255)                  gTCACCAGCTCCAGCTTGGCGAAGGCGGCCGGGTCGTTGGTGGCCGGCAGCGGGTGGCCAATGCTTTCAAGGAAGGCGCGCAGGTTGAACTGGGCGATGGACAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCAGa                                                                                                                                              <  5:240316/135‑1 (MQ=255)                  gTCACCAGCTCCAGCTTGGCGAAGGCGGCCGGGTCGTTGGTGGCCGGCAGCGGGTGGCCAATGCTTTCAAGGAAGGCGCGCAGGTTGAACTGGGCGATGGACAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCAGATCACGCAGGTTCAg                                                                                                                                <  5:102915/149‑1 (MQ=255)                     aCCAGCTCCAGCTTGGCGAAGGCGGCCGGGTCGTTGGTGGCCGGCAGCGGGTGGCCAATGCTTTCAAGGAAGGCGCGCAGGTTGAACTGGGCGATGGACAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCAGATCACGCAGGTTCAGCt                                                                                                                              >  3:249725/1‑148 (MQ=255)                          ctccagctTGGCGAAGGCGGCCGGGTCGTTGGTGGCCGGCAGCGGGTGGCCAATGCTTTCAAGGAAGGCGCGCAGGTTGAACTGGGCGATGGACAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCAGATCACGCAGGTTCAGCTCAcc                                                                                                                          >  5:132476/1‑147 (MQ=255)                             cagctTGGCGAAGGCGGCCGGGTCGTTGGTGGCCGGCAGCGGGTGGCCAATGCTTTCAAGGAAGGCGCGCAGGTTGAACTGGGCGATGGACAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCAGATCACGCAGGTTCAGCTCACCGAgg                                                                                                                      <  2:113852/148‑1 (MQ=255)                             cagctTGGCGAAGGCGGCCGGGGCGTTGGTGGCCGGCAGCGGGTGGCCAATGCTTTCAAGGAAGGCGCGCAGGTTGAACTGGGCGATGGACAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCAGATCACGCAGGTTCAGCTCACCGAgg                                                                                                                      <  6:197366/148‑1 (MQ=255)                                     cGAAGGCGGCCGGGTCGTTGGTGACCGGCAGCGGGTGGCCAATGCTTTCAAGGAAGGCGCGCAGGTTGAACTGGGCGATGGACAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCAGATCACGCAGGTTCAGCTCACCGAGGGCGCGCAgt                                                                                                             >  2:175043/1‑149 (MQ=255)                                       aaGGCGGCCGGGTCGTTGGTGGCCGGCAGCGGGTGGCCAATGCTTTCAAGGAAGGCGCGCAGGTTGAACTGGGCGATGGACAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCAGATCACGCAGGTTCAGCTCACCGAGGGCGCGCAgttg                                                                                                           >  3:242481/1‑149 (MQ=255)                                         ggcggcCGGGTCGTTGGTGGCCGGCAGCGGGTGGCCAATGCTTTCAAGGAAGGCGCGCAGGTTGAACTGGGCGATGGACAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCAGATCACGCAGGTTCAGCTCACCGAGGGCGCGCAgttggt                                                                                                         <  1:190019/149‑1 (MQ=255)                                          gcggcCGGGTCGTTGGTGGCCGGCAGCGGGTGGCCAATGCTTTCAAGGAAGGCGCGCAGGTTGAACTGGGCGATGGACAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCAGATCACGCAGGTTCAGCTCACCGAGGGCGCGCAgttggtt                                                                                                        <  4:242481/149‑1 (MQ=255)                                             gcCGGGTCGTTGGTGGCCGGCAGCGGGTGGCCAATGCTTTCAAGGAAGGCGCGCAGGTTGAACTGGGCGATGGACAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCAGATCACGCAGGTTCAGCTCACCGAGGGCGCGCAGTTGGTTGGc                                                                                                     >  5:226795/1‑149 (MQ=255)                                                gggTCGTTGGTGGCCGGCAGCGGGTGGCCAATGCTTTCAAGGAAGGCGCGCAGGTTGAACTGGGCGATGGACAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCAGATCACGCAGGTTCAGCTCACCGAGGGCGCGCAGTTGGTTGGCCga                                                                                                  <  4:138802/149‑1 (MQ=255)                                                  gTCGTTGGGGGCCGGCAGCGGGTGGCCAATGCTTTCAAGGAAGGCGCGCAGGTTGAACTGGGCGATGGACAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCAGATCACGCAGGTTCAGCTCACCGAGGGCGCGCAGTTGGTTGGCCgaga                                                                                                <  6:226795/149‑1 (MQ=255)                                                         gtggCCGGCAGCGGGTGGCCAATGCTTTCAAGGAAGGCGCGCAGGTTGAACTGGGCGATGGACAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCATATCACGCAGGTTCAGCTCACCGAGGGCGCGCAGTTGGTTGGCCGAGACTTTCa                                                                                          <  1:249075/148‑1 (MQ=255)                                                                   gCGGGTGGCCAATGCTTTCAAGGAAGGCGCGCAGGTTGAACTGGGCGATGGACAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCAGATCACGCAGGTTCAGCTCACCGAGGGCGCGCAGTTGGTTGGCCGAGACTTTCAGGCCGTTCCAt                                                                               >  1:320413/1‑149 (MQ=255)                                                                     gggTGGCCAATGCTTTCAAGGAAGGCGCGCAGGTTGAACTGGGCGATGGACAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCAGATCACGCAGGTTCAGCTCACCGAGGGCGCGCAGTTGGTTGGCCGAGACTTTCAGGCCGTTCCAt                                                                               >  5:309184/1‑147 (MQ=255)                                                                     gggTGGCCAATGCTTTCAAGGAAGGCGCGCAGGTTGAACTGGGCGATGGACAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCAGATCACGCAGGTTCAGCTCACCGAGGGCGCGCAGTTGGTTGGCCGAGACTTTCAGGCCGTTCCATGa                                                                             <  4:171274/149‑1 (MQ=255)                                                                              aTGCTTTCAAGGAAGGCGCGCAGGTTGAACTGGGCGATGGACAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCAGATCACGCAGGTTCAGCTCACCGAGGGCGCGCAGTTGGTTGGCCGAGACTTTCAGGCCGTTCCATGAGGCGACAtt                                                                    <  2:320413/149‑1 (MQ=255)                                                                              aTGCTTTCAAGGAAGGCGCGCAGGTTGAACTGGGCGATGGACAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCAGATCACGCAGGTTCAGCTCACCGAGGGCGCGCAGTTGGTTGGCCGAGACTTTCAGGCCGTTCCATGAGGCGACAtt                                                                    >  2:199839/1‑149 (MQ=255)                                                                               tGCTTTCAAGGAAGGCGCGCAGGTTGAACTGGGCGATGGACAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCAGATCACGCAGGTTCAGCTCACCGAGGGCGCGCAGTTGGTTGGCCGAGACTTTCAGGCCGTTCCATGAGGCGACATTg                                                                   >  3:155998/1‑149 (MQ=255)                                                                                 cTTTCAAGGAAGGCGCGCAGGTTGAACTGGGCGATGGACAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCAGATCACGCAGGTTCAGCTCACCGAGGGCGCGCAGTTGGTTGGCCGAGACTTTCAGGCCGTTCCATGAGGc                                                                          <  8:70809/140‑1 (MQ=255)                                                                                 cTTTCAAGGAAGGCGCGCAGGTTGAACTGGGCGATGGACAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCAGATCACGCAGGTTCAGCTCACCGAGGGCGCGCAGTTGGTTGGCCGAGACTTTCAGGCCGTTCCATGAGGc                                                                          >  7:70809/1‑140 (MQ=255)                                                                                     cAAGGAAGGCGCGCAGGTTGAACTGGGCGATGGACAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCAGATCACGCAGGTTCAGCTCACCGAGGGCGCGCAGTTGGTTGGCCGAGACTTTCAGGCCGTTCCATGAGGCGACATTggcggc                                                              <  7:109745/148‑1 (MQ=255)                                                                                                            tGGGCGATGGACAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCAGATCACGCAGGTTCAGCTCACCGAGGGCGCGCAGTTGGTTGGCCGAGACTTTCAGGCCGTTCCATGAGGCGACATTGGCGGCCAGGTCGACCAGCAGTTGGCCTTg                                      >  6:45017/1‑149 (MQ=255)                                                                                                             gggCGATGGACAGGCC‑GCCGCTCAGCTGGGGTGCCTtgtccatcgcccagttcaacctgcgcgccttccttgaaagcattggccacccgctgccggccaccaacgacccggccgccttcgccaagctggagctggtgactcgcctgctg                                     <  2:283265‑M2/149‑114 (MQ=255)                                                                                                               gCGATGGACAGGCC‑GCCGCTCAGCTGGGGTGCCTtgtccatcgcccagttcaacctgcgcgccttccttgaaagcattggccacccgctgccggccaccaacgacccggccgccttcgccaagctggagctggtgactcgcctgctggg                                   >  1:283265‑M2/1‑34 (MQ=255)                                                                                                                 gATGGACAGGCC‑GCCGCTCAGCTGGGGTGCCTtgtccatcgcccagttcaacctgcgcgccttccttgaaagcattggccacccgctgccggccaccaacgacccggccgccttcgccaagctggagctggtgactcgcctgctgggca                                 <  5:133809‑M2/149‑118 (MQ=255)                                                                                                                     gACAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCAGATCACGCAGGTTCAGCTCACCGAGGGCGCGCAGTTGGTTGGCCGAGACTTTCAGGCCGTTCCATGAGGCGACATTGGCGGCCAGGTCGACCAGCAGTTGGCCTTGGgcggcg                               >  4:93501/1‑147 (MQ=255)                                                                                                                     gACAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCAGATCACGCAGGTTCAGCTCACCGAGGGCGCGCAGTTGGTTGGCCGAGACTTTCAGGCCGTTCCATGAGGCGACATTGGCGGCCAGGTCGACCAGCAGTTGGCCTTGGGCGGCGaa                             <  6:132476/149‑1 (MQ=255)                                                                                                                     gACAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCAGATCACGCAGGTTCAGCTCACCGAGGGCGCGCAGTTGGTTGGCCGAGACTTTCAGGCCGTTCCATGAGGCGACATTGGCGGCCAGGTCGACCAGCAGTTGGCCTTGGGCGGCGaa                             <  3:295485/149‑1 (MQ=255)                                                                                                                      aCAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCAGATCACGCAGGTTCAGCTCACCGAGGGCGCGCAGTTGGTTGGCCGAGACTTTCAGGCCGTTCCATGAGGCGACATTGGCGGCCAGGTCGACCAGCAGTTGGCCTTGGGCGGCGAAg                            >  2:87196/1‑149 (MQ=255)                                                                                                                      aCAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCAGATCACGCAGGTTCAGCTCACCGAGGGCGCGCAGTTGGTTGGCCGAGACTTTCAGGCCGTTCCATGAGGCGACATTGGCGGCCAGGTCGACCAGCAGTTGGCCTTGGGCGGCGAAg                            >  7:20060/1‑149 (MQ=255)                                                                                                                                  cTCAGCTGGGGTGCCTTGTCCAGATCACGCAGGTTCAGCTCACCGAGGGCGCGCAGTTGGTTGGCCGAGACTTTCAGGCCGTTCCATGAGGCGACATTGGCGGCCAGGTCGACCAGCAGTTGGCCTTGGGCGGCGAAGGTCACGGTCtt                 <  6:309184/149‑1 (MQ=255)                                                                                                                                     aGCTGGGGTGCCTTGTCCAGATCACGCAGGTTCAGCTCACCGAGGGCGCGCAGTTGGTTGGCCGAGACTTTCAGGCCGTTCCATGAGGCGACATTGGCGGCCAGGTCGACCAGCAGTTGGCCTTGGGCGGCGAAgg                           >  4:212014/1‑136 (MQ=255)                                                                                                                                     aGCTGGGGTGCCTTGTCCAGATCACGCAGGTTCAGCTCACCGAGGGCGCGCAGTTGGTTGGCCGAGACTTTCAGGCCGTTCCATGAGGCGACATTGGCGGCCAGGTCGACCAGCAGTTGGCCTTGGGCGGCGAAgg                           <  3:212014/136‑1 (MQ=255)                                                                                                                                          gggTGCCTTGTCCAGATCACGCAGGTTCAGCTCACCGAGGGCGCGCAGTTGGTTGGCCGAGACTTTCAGGCCGTTCCATGAGGCGACATTGGCGGCCAGGTCGACCAGCAGTTGGCCTTGGGCGGCGAAGGTCACGGTCTTGCCGCCgg         >  6:145605/1‑149 (MQ=255)                                                                                                                                            gTGCCTTGTCCAGATCACGCAGGTTCAGCTCACCGAGGGCGCGCAGTTGGTTGGCCGAGACTTTCAGGCCGTTCCATGAGGCGACATTGGCGCCCAGGTCGACCAGCAGTTGGCCTTGGGCGGCGAAGGTCACGGTCTTGCCGCCgg         >  4:263880/1‑147 (MQ=255)                                                                                                                                             tGCCTTGTCCAGATCACGCAGGTTCAGCTCACCGAGGGCGCGCAGTTGGTTGGCCGAGACTTTCAGGCCGTTCCATGAGGCGACATTGGCGGCCAGGTCGACCAGCAGTTGGCCTTGGGCGGCGAAGGTCACGGTCTTGCCGCCGGTAg      <  1:175043/149‑1 (MQ=255)                                                                                                                                               ccTTGTCCAGATCACGCAGGTTCAGCTCACCGAGGGCGCGCAGTTGGTTGGCCGAGACTTTCAGGCCGTTCCATGAGGCGACATTGGCGGCCAGGTCGACCAGCAGTTGGCCTTGGGCGGCGa                              >  7:250678/1‑123 (MQ=255)                                                                                                                                               ccTTGTCCAGATCACGCAGGTTCAGCTCACCGAGGGCGCGCAGTTGGTTGGCCGAGACTTTCAGGCCGTTCCATGAGGCGACATTGGCGGCCAGGTCGACCAGCAGTTGGCCTTGGGCGGCGa                              <  8:250678/123‑1 (MQ=255)                                                                                                                                                 ttGTCCAGATCACGCAGGTTCAGCTCACCGAGGGCGCGCAGTTGGTTGGCCGAGACTTTCAGGCCGTTCCATGAGGCGACATTGGCGGCCAGGTCGACCAGCAGTTGGCCTTGGGCGGCGAAGGTCACGGTCTTGCCGCCGGTAGGCt   >  8:110829/1‑148 (MQ=255)                                                                                                                                                 ttGTCCAGATCACGCAGGTTCAGCTCACCGAGGGCGCGCAGTTGGTTGGCCGAGACTTTCAGGCCGTTCCATGAGGCGACATTGGCGGCCAGGTCGACCAGCAGTTGGCCTTGGGCGGCGAAGGTCACGGTCTTGCCGCCGGTAGGCTc  >  8:130673/1‑149 (MQ=255)                                                                                                                                                 |                                                                                                                                                     GTGTGCCCAGCAGGCGAGTCACCAGCTCCAGCTTGGCGAAGGCGGCCGGGTCGTTGGTGGCCGGCAGCGGGTGGCCAATGCTTTCAAGGAAGGCGCGCAGGTTGAACTGGGCGATGGACAGGCC‑GCCGCTCAGCTGGGGTGCCTTGTCCAGATCACGCAGGTTCAGCTCACCGAGGGCGCGCAGTTGGTTGGCCGAGACTTTCAGGCCGTTCCATGAGGCGACATTGGCGGCCAGGTCGACCAGCAGTTGGCCTTGGGCGGCGAAGGTCACGGTCTTGCCGCCGGTAGGCTC  >  NC_002947/346789‑347080

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.