New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	362138 =	51 (0.980)	3 (0.060)	3/250	NT	6.7%	coding (369/471 nt)	PP_0301	betainyl‑CoA thiolase
	?	NC_002947	362203 =	36 (0.740)					coding (304/471 nt)	PP_0301	betainyl‑CoA thiolase

GCTTCGTATCTATGGAGACCTTGGCGCCGGTTCTCTGGTTATTCAAGCAGGAAGTTTTATCGTACGCCCCATATATTGCGGCGCCTGCGCACCCTCCTGTTGCTCTACCAAGTGATTCAACCGGCAAACAGTCGTGTGCCCAAAAGGTGCTGACTGCGGCCCCGCCAGGT‑CCACGTGCAGTAACATCTGCTCGCTTGCCGCCAGCACCTCGTCGAACCCTGCCCGGTGCAGGCTGTGATACACGTGAAGACGCTTGCGATCAAAGCCGAGGATCTGTGTCTGCACCCA  >  NC_002947/361994‑362281                                                                                                                                                 |                                                                                                                                                 actcgctgttcacgctggaggcgcatatcaattatttgcacgaggtgaagctgggcaccgaggtgtgggtgcagacacagatcctcggctttgatcgcaagcgtcttcacgtgtatcacagcctgcaccgggcagggttcgacgAGGt                                                                                                                                               >  6:166872‑M1/145‑148 (MQ=255)   ttCGTATCTATGGAGACCTTGGCGCCGGTTCTCTGGTTATTCAAGCAGGAAGTTTTATCGTACGCCCCATATATTGCGGCGCCTGCGCACCCTCCTGTTGCTCTACCAAGTGATTCAACCGGCAAACAGTCGTGTGCCCAAAAGGTGCt                                                                                                                                            >  7:292878/1‑149 (MQ=255)        aTCTATGGAGACCTTGGCGCCGGTTCTCTGGTTATTCAAGCAGGAAGTTTTATCGTACGCCCCATATATTGCGGCGCCTGCGCACCCTCCTGTTGCTCTACCAAGTGATTCAACCGGCAAACAGTCGTGTGCCCAAAAGGTGCTGACTg                                                                                                                                       >  6:158873/1‑149 (MQ=255)               gagaCCTTGGCGCCGGTTCTCTGGTTATTCAAGCAGGAAGTTTTATCGTACGCCCCATATATTGCGGCGCCTGCGCACCCTCCTGTTGCTCTACCAAGTGATTCAACCGGCAAACAGTCGTGTGCCCAAAAGGTGCTGACTGCGGcccc                                                                                                                                >  3:51567/1‑149 (MQ=255)                     ttGGCGCCGGTTCTCTGGTTATTCAAGCAGGAAGTTTTATCGTACGCCCCATATATTGCGGCGCCTGCGCACCCTCCTGTTGCTCTACCAAGTGATTCACCCGGCAAACAGTCGTGTGCCCAAAAGGTGCTGACTGCGGCCCAGCCacg                                                                                                                          >  4:240626/1‑147 (MQ=255)                       ggCGCCGGTTCTCTGGTTATTCAAGCAGGAAGTTTTATCGTACGCCCCATATATTGCGGCGCCTGCGCACCCTCCTGTTGCTCTACCAAGTGATTCAACCGGCAAACAGTCGTGTGCCCAAAAGGTGCTGACTGCGGCCCCGCCAGGT‑c                                                                                                                       >  2:231185/1‑149 (MQ=255)                        gcgcCGGTTCTCTGGTTATTCAAGCAGGAAGTTTTATCGTACGCCCCATATATTGCGGCGCCTGCGCACCCTCCTGTTGCTCTACCAAGTGATTCAACCGGCAAACAGTCGTGTGCCCAAAAGGTGCTGACTGCGGCCCCGCCAGGT‑cc                                                                                                                      <  4:51567/149‑1 (MQ=255)                          gcCGGTTCTCTGGTTATTCAAGCAGGAAGTTTTATCGTACGCCCCATATATTGCGGCGCCTGCGCACCCTCCTGTTGCTCTACCAAGTGATTCAACCGGCAAACAGTCGTGTGCCCAATAGGTGCTGACTGCGGCCCCGCCAGGT‑CCAc                                                                                                                    <  4:217688/149‑1 (MQ=255)                            cGGTTCTCTGGTTATTTAAGCAGGAAGTTTTATCGTACGCCCCATATATTGCGGCGCCTGCGCACCCTCCTGTTGCTCTACCAAGTGATTCAACCGGCAATCAGTCGTGTGCCCAAAAGGTGCTGACTGCGGCCCCGCCAGGT‑CCACGt                                                                                                                  <  1:95157/149‑1 (MQ=255)                                     ggTTATTCAAGCAGGAAGTTTTATCGTACGCCCCATATATTGCGGCGCCTGCGCACCCTCCTGTTGCTCTACCAAGTGATTCAACCGGCAAACAGTCGTGTGCCCAAAAGGTGCTGACTGCGGCCCCGCCAg                                                                                                                           <  4:162537/132‑1 (MQ=255)                                     ggTTATTCAAGCAGGAAGTTTTATCGTACGCCCCATATATTGCGGCGCCTGCGCACCCTCCTGTTGCTCTACCAAGTGATTCAACCGGCAAACAGTCGTGTGCCCAAAAGGTGCTGACTGCGGCCCCGCCAg                                                                                                                           >  3:162537/1‑132 (MQ=255)                                      gTTATTCAAGCAGGAAGTTTTATCGTACGCCCCATATATTGCGGCGCCTGCGCACCCTCCTGTTGCTCTACCAAGTGATTCAACCGGCAAACAGTCGTGTGCCCAAAAGGTGCTGACTGCGGCCCCGCCAGGT‑CCACGTGCAGTAACa                                                                                                         >  2:223292/1‑148 (MQ=255)                                         aTTCAAGCAGGAAGTTTTATCGTACGCCCCATATATTGCGGCGCCTGCGCACCCTCCTGTTGCTCTACCAAGTGATTCAACCGGCAAACAGTCGTGTGCCCAAAAGGTGCTGACTGCGGCCCCGCCAGGT‑CCACGTGCAGTAACATCt                                                                                                      >  3:229892/1‑148 (MQ=255)                                             aaGCAGGAAGTTTTATCGTACGCCCCATATATTGCGGCGCCTGCGCACCCTCCTGTTGCTCTACCAAGTGATTCAACCGGCAAACAGTCGTGTGCCCAAAAGGTGCTGACTGCGGCCCCGCCAGGT‑CCACGTGCa                                                                                                               >  6:241199/1‑135 (MQ=255)                                             aaGCAGGAAGTTTTATCGTACGCCCCATATATTGCGGCGCCTGCGCACCCTCCTGTTGCTCTACCAAGTGATTCAACCGGCAAACAGTCGTGTGCCCAAAAGGTGCTGACTGCGGCCCCGCCAGGT‑CCACGTGCa                                                                                                               <  5:241199/135‑1 (MQ=255)                                             aaGCAGGAAGTTTTATCGTACGCCCCATATATTGCGGCGCCTGCGCACCCTCCTGTTGCTCTACCAAGTGATTCAACCGGCAAACAGTCGTGTGCCCAAAAGGTGCTGACTGCGGCCCCGCCAGGT‑CCACGTGCAGTAACATCTGCTCg                                                                                                 >  5:64494/1‑149 (MQ=255)                                                cAGGAAGTTTTATCGTACGCCCCATATATTGCGGCGCCTGCGCACCCTCCTGTTGCTCTACCAAGTGATTCAACCGGCAAACAGTCGTGTGCCCAAAAGGTGCTGACTGCGGCCCCGCCAGGT‑CCACGTGCAGTAACATCTGCTCGCtt                                                                                              <  7:132945/149‑1 (MQ=255)                                                cAGGAAGTTTTATCGTACGCCCCATATATTGCGGCGCCTGCGCACCCTCCTGTTGCTCTACCAAGTGATTCAACCGGCAAACAGTCGTGTGCCCAAAAGGTGCTGACTGCGGCCCCGCCAGGT‑CCACGTGCAGTAACATCTGCTCGCtt                                                                                              <  8:292878/149‑1 (MQ=255)                                                cAGGAAGTTTTATCGTACGCCCCATATATTGCGGCGCCTGCGCACCCTCCTGTTGCTCTACCAAGTGATTCAACCGGCAAACAGTCGTGTGCCCAAAAGGTGCTGACTGCGGCCCCGCCAGGT‑CCACGTGCAGTAACATCTGCTCGCtt                                                                                              <  5:158873/149‑1 (MQ=255)                                                   gAAGTTTTATCGTACGCCCCATATATTGCGGCGCCTGCGCACCCTCCTGTTGCTCTACCAAGTGATTCAACCGGCAAACAGTCGTGTGCCCAAAAGGTGCTGACTGCGGCCCCGCCAGGT‑CCACGTGCa                                                                                                               <  6:35723/129‑1 (MQ=255)                                                   gAAGTTTTATCGTACGCCCCATATATTGCGGCGCCTGCGCACCCTCCTGTTGCTCTACCAAGTGATTCAACCGGCAAACAGTCGTGTGCCCAAAAGGTGCTGACTGCGGCCCCGCCAGGT‑CCACGTGCa                                                                                                               >  5:35723/1‑129 (MQ=255)                                                   gAAGTTTTATCGTACGCCCCATATATTGCGGCGCCTGCGCACCCTCCTGTTGCTCTACCAAGTGATTCAACCGGCAAACAGTCGTGTGCCCAAAAGGTGCTGACTGCGGCCCCGCCAGGT‑CCACGTGCAGTAACATCTGCTCGCTTgcc                                                                                           <  4:229892/149‑1 (MQ=255)                                                   ctgggcaccgaggtgtgggtgcagacacagatcctcggctttgatcgcaagcgtcttcacgtgtatcacagcctgcaccgggcagggttcgacgAGGTGCTGACTGCGGCCCCGCCAGGT‑CCACGTGCAGTAACATCTGCTCGCTTgcc                                                                                           <  6:254056‑M1/55‑1 (MQ=255)                                                       ttttATCGTACGCCCCATATATTGCGGCGCCTGCGCACCCTCCTGTTGCTCTACCAAGTGATTCAACCGGCAAACAGTCGTGAGCCCAAAAGGTGCTGACTGCGGCCCCGCCAGGT‑CCACGTGCAGTAACATCTGCTCGCTTgccgc                                                                                         >  5:301872/1‑147 (MQ=255)                                                         ttATCGTACGCCCCATATATTGCGGCGCCTGCGCACCCTCCTGTTGCTCTACCAAGTGATTCAACCGGCAAACAGTCGTGTGCCCAAAAGGTGCTGACTGCGGCCCCGCCAGGT‑CCACGTGCAGTAACATCTGCTCGCTTGCCGCCAg                                                                                      <  6:64494/148‑1 (MQ=255)                                                         atATCGTACGCCCCATAAATTGCGGCGCCTGCGCACCCTCCTGTTGCTCTACCAAGTGATTCAACCGGCAAACAGTCGTGTGCCCAAAAGGTGCTGACTGCGGACCCCCCAGGT‑CCACGTGCAGAAAAATATGCTCGCTTGCCGCCAg                                                                                      >  8:46177/2‑148 (MQ=255)                                                              ggtgtgggtgcagacacagatcctcggctttgagcgcaagcgtcttcacgtgtatcacagcctgcaccgggcagggttcgacgAGGTGCTGACTGCGGCCCCGCCAGGT‑CCACGTGCAGTAACATCTGCTCGCTTGCCGCCAGCACCtc                                                                                >  7:293281‑M1/84‑149 (MQ=255)                                                                tgtgggtgcagacacagatcctcggctttgatcgcaagcgtcttcacgtgtatcacagcctgcaccgggcagggttcgacgAGGTGCTGACTGCGGCCCCGCCAGGT‑CCACGTGCAGTAACATCTGCTCGCTTGCCGCCAGCACCtcgt                                                                              >  5:254056‑M1/82‑149 (MQ=255)                                                                     ccATATATTGCGGCGCCTGCGCACCCTCCTGTTGCTCTACCAAGTGATTCAACCGGCAAACAGTCGTGTGCCCAAAAGGTGCTGACTGCGGCCCCGCCAGGTCCCACGTGCAGTAACATCTGCTCGCTTGCCGCCAGCACCTCGTCGaa                                                                          <  1:231185/149‑1 (MQ=255)                                                                       atatatTGCGGCGCCTGCGCACCCTCCTGTTGCTCTACCAAGTGATTCAACCGGCAAACAGTCGTGCGCCCAAAAGGTGCTGACTGCGGCCCCGCCAGGT‑CCACGTGCAGTAACATCTGCTCGCTTGCCGCCAGCACCTCGTCGAAccc                                                                       <  6:301872/149‑1 (MQ=255)                                                                                 gcgcCTGCGCACCCTCCTGTTGCTCTACCAAGTGATTCAACCGGCAAACAGTCGTGTGCCCAAAAGGTGCTGACTGCGGCCCCGCCAGGT‑CCACGTGCAGTAACATCTGCTCGCTTGCCGCCAGCACCTCGTCGAACCCTGCCCGGTg                                                              >  5:119738/1‑148 (MQ=255)                                                                                 gcgcCTGCGCACCCTCCTGTTGCTCTACCAAGTGATTCAACCGGCAAACAGTCGTGTGCCCAAAAGGTGCTGACTGCGGCCCCGCCAGGT‑CCACGTGCAGTAACATCTGCTCGCTTGCCGCCAGCACCTCGTCGAACCCTGCCCGGTGc                                                             <  1:223292/149‑1 (MQ=255)                                                                                  cgcCTGCGCACCCTCCTGTTGCTCTACCAAGTGATTCAACCGGCAAACAGTCGTGTGCCCAAAAGGTGCTGACTGCGGCCCCGCCAGGT‑CCACGTGCAGTAACATCTGCTCGCTTGCCGCCAGCACCTCGTCGAACCCTGCCCGGTGCa                                                            <  7:46177/149‑1 (MQ=255)                                                                                       gcgcACCCTCCTGTTGCTCTACCAATTGATTCAACCGGCAAACAGTCGTGTGCCCAAAAGGTGCTGACTGCGGCCCCGCCATGT‑CCACGTGCAGTAACATCTGTTCGCTTGCCGCCAGCACCTCGTCGAACCCTGCCCGGTGCAGGCtg                                                       <  7:201439/149‑1 (MQ=255)                                                                                         gcACCCTCCTGTTGCTCTACCAAGTGATTCAACCGGCAAACAGTCGTGTGCCCAAAAGGTGCTGACTGCGGCCCCGcc                                                                                                                             <  1:298983/78‑1 (MQ=255)                                                                                         gcACCCTCCTGTTGCTCTACCAAGTGATTCAACCGGCAAACAGTCGTGTGCCCAAAAGGTGCTGACTGCGGCCCCGcc                                                                                                                             >  2:298983/1‑78 (MQ=255)                                                                                          cACCCTCCTGTTGCTCTACCAAGTGATTCAACCGGCAAACAGTCGTGTGCCCAAAAGGTGCTGACTGCGGCCCCGCCAGGT‑CCACGTGCAGTAACATCTGCTCGCTTGCCGCCAGCACCTCGTCGAACCCTGCCCg                                                                 >  4:308280/1‑136 (MQ=255)                                                                                          cACCCTCCTGTTGCTCTACCAAGTGATTCAACCGGCAAACAGTCGTGTGCCCAAAAGGTGCTGACTGCGGCCCCGCCAGGT‑CCACGTGCAGTAACATCTGCTCGCTTGCCGCCAGCACCTCGTCGAACCCTGCCCg                                                                 <  3:308280/136‑1 (MQ=255)                                                                                                      gCTCTACCAAGTGATTCAACCGGCAAACAGTCGTGTGCCCAAAAGGTGCTGACTGCGGCCCCGCCAgg                                                                                                                          >  5:11888/1‑68 (MQ=255)                                                                                                      gCTCTACCAAGTGATTCAACCGGCAAACAGTCGTGTGCCCAAAAGGTGCTGACTGCGGCCCCGCCAgg                                                                                                                          <  6:11888/68‑1 (MQ=255)                                                                                                        tctACCAAGTGATTCAACCGGCAAACAGTCGTGTGCCCAAAAGGTGCTGACTGCGGCCCCGCCAGGT‑CCACGTGCAGTAACATCTGCTCGCTTGCCGCCAGCACCTCGTCGAACCCTGCCCGGTGCAGGCTGTGATACACGTGAAGACg                                      >  6:3829/1‑149 (MQ=255)                                                                                                             cAAGTGATTCAACCGGCAAACAGTCGTGTGCCCAAAAGGTGCTGACTGCGGCCCCGCCAGGT‑CCACGTGCAGTAACATCTGCTCGCTTGCCGCCAGCACCTCGTCGAACCCTGCCCGGTGCAGGCTGTGATACACGTGATGACGCTTGc                                 >  3:200649/1‑149 (MQ=255)                                                                                                               aGTGATTCAACCGGCAAACAGTCGTGTGCCCAAAAGGTGCTGACTGCGGCCCCGCCAGGT‑CCACGTGCAGTAACATCTGCTCGCTTGCCGCCAGCACCTCGTCGAACCCTGCCCGGTGCAGGCTGTGATACACGTGAAGACGCTTGCGa                               >  2:205626/1‑149 (MQ=255)                                                                                                                          cGGCAAACAGTCGTGTGCCCAAAAGGTGCTGACTGCGGCCCCGCCAGGT‑CCACGTGCAGTAACATCTGCTCGCTTGCCGCCAGCACCTCGTCGAACCCTGCCCGGTGCAGGCTGTGATACACGTGAAGACGCTTGCGATCAAAGCCGAg                    >  1:128884/1‑149 (MQ=255)                                                                                                                          cGGCAAACAGTAGTGTGACCAAAAGGTGCTGACAGCGGCCCCGCCAGGT‑CAACCTGCAGTAACATCTGCTCGCTTGCCGCCACCACCTCGTCTAACCCAGCCCGGAGCAGGCTTTGATACAAGAGAAGACGCATGCGATCAAAGCCCAg                    >  6:198384/1‑149 (MQ=255)                                                                                                                            gCAAACAGTCGTGTGCCCAAAAGGTGCTGACTGCGGCCCCGCCAGGT‑CCACGTGCAGTAACATCTGCTCGCTTGCCGCCAGCACCTCGTCGAACCCTGCCCGGTGCAGGCtgt                                                      >  6:79484/1‑113 (MQ=255)                                                                                                                            gCAAACAGTCGTGTGCCCAAAAGGTGCTGACTGCGGCCCCGCCAGGT‑CCACGTGCAGTAACATCTGCTCGCTTGCCGCCAGCACCTCGTCGAACCCTGCCCGGTGCAGGCtgt                                                      <  5:79484/113‑1 (MQ=255)                                                                                                                                aCAGTCGTGTGCCCAAAAGGTGCTGACTGCGGCCCCGCCAGGT‑CCACGTGCAGTAACATCTGCTCGCTTGCCGCCAGCACCTCGTCGAACCCTGCCCGGTGCAGGCTGTGATACACGTGAAGACGCTTGCGATCAAAGCCGAGGATCt               >  1:111231/1‑148 (MQ=255)                                                                                                                                aCAGTCGTGTGCCCAAAAGGTGCTGACTGCGGCCCCGCCAGGT‑CCACGTGCAGTAACATCTGCTCGCTTGCCGCCAGCACCTCGTCGAACCCTGCCCGGTGCAGGCTGTGATACACGTGAAGACGCTTGCGATCAAAGCCGAGGATCt               <  2:111231/148‑1 (MQ=255)                                                                                                                                 cAGTCGTGTGCCCAAAAGGTGCTGACTGCGGCCCCGCCAGGT‑CCACGTGCAGTAACATCTGCTCGCTTGCCGCCAGCACCTCGTCGAACCCTGCCCGGTGCAGGCTGTGATACACGTGAAGACGCTTGCGATCAAAGCCGAGGATCtgt             <  1:205626/149‑1 (MQ=255)                                                                                                                                   gTCGTGTGCCCAAAAGGTGCTGACTGCGGCCCCGCCAGGT‑CCACGTGCAGTAACATCTGCTCGCTTGCCGCCAGCACCTCGTCGAACCCTGCCCGGTGCAGGCTGTGATACACGTGAAGACGCTTGCGATCAAAGCCGAGGATCTgtgt           <  6:119738/149‑1 (MQ=255)                                                                                                                                    tCGTGTGCCCAAAAGGTGCTGACTGCGGCCCCGCCAGGT‑CCACGTGCAGTAACATCTGCTCGCTTGCCGCCAGCACCTCGTCGAACCCTGCCCGGTGCAGGCTGTGATACACGTGAAGACGCTTGCGATCAAAGCCGAGGATCTGTGTc          >  3:205434/1‑149 (MQ=255)                                                                                                                                          gCCCAAAAGGTGCTGACTGCGGCCCCGCCAGGT‑CCACGTGCAGTAACATCTGCTCGCTTGCCGCCAGCACCTCGTCGAACCCTGCCCGGTGCAGGCTGTGATACACGTGAAGACGCTTGCGATCAAAGCCGAGGATCtgt             >  2:16682/1‑140 (MQ=255)                                                                                                                                          gCCCAAAAGGTGCTGACTGCGGCCCCGCCAGGT‑CCACGTGCAGTAACATCTGCTCGCTTGCCGCCAGCACCTCGTCGAACCCTGCCCGGTGCAGGCTGTGATACACGTGAAGACGCTTGCGATCAAAGCCGAGGATCtgt             <  1:16682/140‑1 (MQ=255)                                                                                                                                           cccAAAAGGTGCTGACTGCGGCCCCGCCAGGT‑CCACGTGCAGTAACATCTGCTCGCTTGCCGCCAGCACCTCGTCGAACCCTGCCCGGTGCAGGCTGTGATACACGTGAAGACGCTTGCGATCAAAGCCGAGGATCTGTGTCTGCAcc    <  3:240626/148‑1 (MQ=255)                                                                                                                                            ccAAAAGGTGCTGACTGCGGCCCCGCCAGGT‑CCACGTGCAGTAACATCTGCTCGCTTGCCGCCAGCACCTCGTCGAACCCTGCCCGGTGCAGGCTGTGATCCACGTGAAGACGCTTGCGATCAAAGCCGAGGATCTGTGTCTGCACCca  >  7:290003/1‑149 (MQ=255)                                                                                                                                                 |                                                                                                                                                 GCTTCGTATCTATGGAGACCTTGGCGCCGGTTCTCTGGTTATTCAAGCAGGAAGTTTTATCGTACGCCCCATATATTGCGGCGCCTGCGCACCCTCCTGTTGCTCTACCAAGTGATTCAACCGGCAAACAGTCGTGTGCCCAAAAGGTGCTGACTGCGGCCCCGCCAGGT‑CCACGTGCAGTAACATCTGCTCGCTTGCCGCCAGCACCTCGTCGAACCCTGCCCGGTGCAGGCTGTGATACACGTGAAGACGCTTGCGATCAAAGCCGAGGATCTGTGTCTGCACCCA  >  NC_002947/361994‑362281

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.