New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	362138 =	51 (0.980)	3 (0.060)	3/250	NT	6.7%	coding (369/471 nt)	PP_0301	betainyl‑CoA thiolase
	?	NC_002947	362203 =	36 (0.740)					coding (304/471 nt)	PP_0301	betainyl‑CoA thiolase

GTACGCCCCATATATTGCGGCGCCTGCGCACCCTCCTGTTGCTCTACCAAGTGATTCAACCGGCAAACAGTCGTGTGCCCAAAAGGTGCTGACTGCGGCCCCGCCAGGT‑CCACGTGCAGTAACATCTGCTCGCTTGCCGCCAGCACCTCGTCGAACCCTGCCCGGTGCAGGC‑TGTGATACACGTGAAGACGCTTGCGATCAAAGCCGAGGATCTGTGTCTGCACCCACACCTCGGTGCCCAGCTTCACCTCGTGCAAATAATTGATATGCGCCTCCAGCGTGAACAGCGAGT  >  NC_002947/362055‑362346                                                                                                                                                      |                                                                                                                                                 ggtgtgggtgcagacacagatcctcggctttgagcgcaagcgtcttcacgtgtatcacagcctgcaccgggcagggttcgacgAGGTGCTGACTGCGGCCCCGCCAGGT‑CCACGTGCAGTAACATCTGCTCGCTTGCCGCCAGCACCtc                                                                                                                                                  >  7:293281‑M1/84‑149 (MQ=255)   tgtgggtgcagacacagatcctcggctttgatcgcaagcgtcttcacgtgtatcacagcctgcaccgggcagggttcgacgAGGTGCTGACTGCGGCCCCGCCAGGT‑CCACGTGCAGTAACATCTGCTCGCTTGCCGCCAGCACCtcgt                                                                                                                                                >  5:254056‑M1/82‑149 (MQ=255)        ccATATATTGCGGCGCCTGCGCACCCTCCTGTTGCTCTACCAAGTGATTCAACCGGCAAACAGTCGTGTGCCCAAAAGGTGCTGACTGCGGCCCCGCCAGGTCCCACGTGCAGTAACATCTGCTCGCTTGCCGCCAGCACCTCGTCGaa                                                                                                                                            <  1:231185/149‑1 (MQ=255)          atatatTGCGGCGCCTGCGCACCCTCCTGTTGCTCTACCAAGTGATTCAACCGGCAAACAGTCGTGCGCCCAAAAGGTGCTGACTGCGGCCCCGCCAGGT‑CCACGTGCAGTAACATCTGCTCGCTTGCCGCCAGCACCTCGTCGAAccc                                                                                                                                         <  6:301872/149‑1 (MQ=255)                    gcgcCTGCGCACCCTCCTGTTGCTCTACCAAGTGATTCAACCGGCAAACAGTCGTGTGCCCAAAAGGTGCTGACTGCGGCCCCGCCAGGT‑CCACGTGCAGTAACATCTGCTCGCTTGCCGCCAGCACCTCGTCGAACCCTGCCCGGTg                                                                                                                                >  5:119738/1‑148 (MQ=255)                    gcgcCTGCGCACCCTCCTGTTGCTCTACCAAGTGATTCAACCGGCAAACAGTCGTGTGCCCAAAAGGTGCTGACTGCGGCCCCGCCAGGT‑CCACGTGCAGTAACATCTGCTCGCTTGCCGCCAGCACCTCGTCGAACCCTGCCCGGTGc                                                                                                                               <  1:223292/149‑1 (MQ=255)                     cgcCTGCGCACCCTCCTGTTGCTCTACCAAGTGATTCAACCGGCAAACAGTCGTGTGCCCAAAAGGTGCTGACTGCGGCCCCGCCAGGT‑CCACGTGCAGTAACATCTGCTCGCTTGCCGCCAGCACCTCGTCGAACCCTGCCCGGTGCa                                                                                                                              <  7:46177/149‑1 (MQ=255)                          gcgcACCCTCCTGTTGCTCTACCAATTGATTCAACCGGCAAACAGTCGTGTGCCCAAAAGGTGCTGACTGCGGCCCCGCCATGT‑CCACGTGCAGTAACATCTGTTCGCTTGCCGCCAGCACCTCGTCGAACCCTGCCCGGTGCAGGC‑tg                                                                                                                        <  7:201439/149‑1 (MQ=255)                             cACCCTCCTGTTGCTCTACCAAGTGATTCAACCGGCAAACAGTCGTGTGCCCAAAAGGTGCTGACTGCGGCCCCGCCAGGT‑CCACGTGCAGTAACATCTGCTCGCTTGCCGCCAGCACCTCGTCGAACCCTGCCCg                                                                                                                                   >  4:308280/1‑136 (MQ=255)                             cACCCTCCTGTTGCTCTACCAAGTGATTCAACCGGCAAACAGTCGTGTGCCCAAAAGGTGCTGACTGCGGCCCCGCCAGGT‑CCACGTGCAGTAACATCTGCTCGCTTGCCGCCAGCACCTCGTCGAACCCTGCCCg                                                                                                                                   <  3:308280/136‑1 (MQ=255)                                           tctACCAAGTGATTCAACCGGCAAACAGTCGTGTGCCCAAAAGGTGCTGACTGCGGCCCCGCCAGGT‑CCACGTGCAGTAACATCTGCTCGCTTGCCGCCAGCACCTCGTCGAACCCTGCCCGGTGCAGGC‑TGTGATACACGTGAAGACg                                                                                                       >  6:3829/1‑149 (MQ=255)                                                cAAGTGATTCAACCGGCAAACAGTCGTGTGCCCAAAAGGTGCTGACTGCGGCCCCGCCAGGT‑CCACGTGCAGTAACATCTGCTCGCTTGCCGCCAGCACCTCGTCGAACCCTGCCCGGTGCAGGC‑TGTGATACACGTGATGACGCTTGc                                                                                                  >  3:200649/1‑149 (MQ=255)                                                  aGTGATTCAACCGGCAAACAGTCGTGTGCCCAAAAGGTGCTGACTGCGGCCCCGCCAGGT‑CCACGTGCAGTAACATCTGCTCGCTTGCCGCCAGCACCTCGTCGAACCCTGCCCGGTGCAGGC‑TGTGATACACGTGAAGACGCTTGCGa                                                                                                >  2:205626/1‑149 (MQ=255)                                                             cGGCAAACAGTCGTGTGCCCAAAAGGTGCTGACTGCGGCCCCGCCAGGT‑CCACGTGCAGTAACATCTGCTCGCTTGCCGCCAGCACCTCGTCGAACCCTGCCCGGTGCAGGC‑TGTGATACACGTGAAGACGCTTGCGATCAAAGCCGAg                                                                                     >  1:128884/1‑149 (MQ=255)                                                             cGGCAAACAGTAGTGTGACCAAAAGGTGCTGACAGCGGCCCCGCCAGGT‑CAACCTGCAGTAACATCTGCTCGCTTGCCGCCACCACCTCGTCTAACCCAGCCCGGAGCAGGC‑TTTGATACAAGAGAAGACGCATGCGATCAAAGCCCAg                                                                                     >  6:198384/1‑149 (MQ=255)                                                               gCAAACAGTCGTGTGCCCAAAAGGTGCTGACTGCGGCCCCGCCAGGT‑CCACGTGCAGTAACATCTGCTCGCTTGCCGCCAGCACCTCGTCGAACCCTGCCCGGTGCAGGC‑tgt                                                                                                                       <  5:79484/113‑1 (MQ=255)                                                               gCAAACAGTCGTGTGCCCAAAAGGTGCTGACTGCGGCCCCGCCAGGT‑CCACGTGCAGTAACATCTGCTCGCTTGCCGCCAGCACCTCGTCGAACCCTGCCCGGTGCAGGC‑tgt                                                                                                                       >  6:79484/1‑113 (MQ=255)                                                                   aCAGTCGTGTGCCCAAAAGGTGCTGACTGCGGCCCCGCCAGGT‑CCACGTGCAGTAACATCTGCTCGCTTGCCGCCAGCACCTCGTCGAACCCTGCCCGGTGCAGGC‑TGTGATACACGTGAAGACGCTTGCGATCAAAGCCGAGGATCt                                                                                >  1:111231/1‑148 (MQ=255)                                                                   aCAGTCGTGTGCCCAAAAGGTGCTGACTGCGGCCCCGCCAGGT‑CCACGTGCAGTAACATCTGCTCGCTTGCCGCCAGCACCTCGTCGAACCCTGCCCGGTGCAGGC‑TGTGATACACGTGAAGACGCTTGCGATCAAAGCCGAGGATCt                                                                                <  2:111231/148‑1 (MQ=255)                                                                    cAGTCGTGTGCCCAAAAGGTGCTGACTGCGGCCCCGCCAGGT‑CCACGTGCAGTAACATCTGCTCGCTTGCCGCCAGCACCTCGTCGAACCCTGCCCGGTGCAGGC‑TGTGATACACGTGAAGACGCTTGCGATCAAAGCCGAGGATCtgt                                                                              <  1:205626/149‑1 (MQ=255)                                                                      gTCGTGTGCCCAAAAGGTGCTGACTGCGGCCCCGCCAGGT‑CCACGTGCAGTAACATCTGCTCGCTTGCCGCCAGCACCTCGTCGAACCCTGCCCGGTGCAGGC‑TGTGATACACGTGAAGACGCTTGCGATCAAAGCCGAGGATCTgtgt                                                                            <  6:119738/149‑1 (MQ=255)                                                                       tCGTGTGCCCAAAAGGTGCTGACTGCGGCCCCGCCAGGT‑CCACGTGCAGTAACATCTGCTCGCTTGCCGCCAGCACCTCGTCGAACCCTGCCCGGTGCAGGC‑TGTGATACACGTGAAGACGCTTGCGATCAAAGCCGAGGATCTGTGTc                                                                           >  3:205434/1‑149 (MQ=255)                                                                             gCCCAAAAGGTGCTGACTGCGGCCCCGCCAGGT‑CCACGTGCAGTAACATCTGCTCGCTTGCCGCCAGCACCTCGTCGAACCCTGCCCGGTGCAGGC‑TGTGATACACGTGAAGACGCTTGCGATCAAAGCCGAGGATCtgt                                                                              <  1:16682/140‑1 (MQ=255)                                                                             gCCCAAAAGGTGCTGACTGCGGCCCCGCCAGGT‑CCACGTGCAGTAACATCTGCTCGCTTGCCGCCAGCACCTCGTCGAACCCTGCCCGGTGCAGGC‑TGTGATACACGTGAAGACGCTTGCGATCAAAGCCGAGGATCtgt                                                                              >  2:16682/1‑140 (MQ=255)                                                                              cccAAAAGGTGCTGACTGCGGCCCCGCCAGGT‑CCACGTGCAGTAACATCTGCTCGCTTGCCGCCAGCACCTCGTCGAACCCTGCCCGGTGCAGGC‑TGTGATACACGTGAAGACGCTTGCGATCAAAGCCGAGGATCTGTGTCTGCAcc                                                                     <  3:240626/148‑1 (MQ=255)                                                                               ccAAAAGGTGCTGACTGCGGCCCCGCCAGGT‑CCACGTGCAGTAACATCTGCTCGCTTGCCGCCAGCACCTCGTCGAACCCTGCCCGGTGCAGGC‑TGTGATCCACGTGAAGACGCTTGCGATCAAAGCCGAGGATCTGTGTCTGCACCca                                                                   >  7:290003/1‑149 (MQ=255)                                                                                  acgaggtgctggcggcaagcgagcagatgttactgcacgtggacctggcggggccgcagtcagcacctCGTCGAACCCTGCCCGGTGCAGGC‑TGTGATACACGTGAAGACGCTTGCGATCAAAGCCGAGGATCTGTGTCTGCACCcaca                                                                 >  5:254056‑M2/69‑149 (MQ=255)                                                                                    gaggtgctggcggcaagcgagcagatgttactgcacgtggacctggcggggccgcagtcagcacctCGTCGAACCCTGCCCGGTGCAGGC‑TGTGATACACGTGAAGACGCTTGCGCTCAAAGCCGAGGATCTGTGTCTGCACCCACAcc                                                               >  7:293281‑M2/67‑149 (MQ=255)                                                                                      GTGCTGACTGCGGCCCCGCCAGGT‑CCACGTGCAGTAACATCTGCTCGCTTGCCGCCAGCACCTCGTCGAACCCTGCCCGGTGCAGGC‑TGTGATACACGTGAAGACGCTTGCGATCAAAGCCGAGGATCTGTGTCTGCAcc                                                                     <  5:243177‑M1/140‑1 (MQ=255)                                                                                      GTGCTGACTGCGGCCCCGCCAGGT‑CCACGTCCAGTAACATCTGCTCGCTTGCCGCCAGCACCTCGTCGAACCCTGCCCGGTGCAGGC‑TGTGATACACGTGAAGACGCTTGCGATCAAAGCCGAGGATCTGTGTCTGCAcc                                                                     >  6:243177‑M1/1‑140 (MQ=255)                                                                                         CTGACTGCGGCCCCGCCAGGT‑CCACGTGCAGTAACATCTGCTCGCTTGCCGCCAGCACCTCGTCGAACCCTGCCCGGTGCAGGC‑TGTGATACACGTGAAGACGCTTGCGATCAAAGCCGAGGATCTGTGTCTGCACCCACACCTCGGTg                                                         <  7:42885‑M1/149‑1 (MQ=255)                                                                                               ggcaagcgagcagatgttactgcacgtggacctggcggggccgcagtcagcacctCGTCGAACCCTGCCCGGTGCAGGC‑TGTGATACACGTGAAGACGCTTGCGATCAAAGCCGAGGATCTGTGTCTGCACCCACACCTCGGTGCCCAg                                                    <  6:254056‑M2/94‑1 (MQ=255)                                                                                                 ggCCCCGCCAGGT‑CCACGTGCAGTAACATCTGCTCGCTTGCCGCCAGCACCTCGTCGAACCCTGCCCGGTGCAGGC‑TGTGATACACGTGAAGACGCTTGCGATCAAAGCCGAGGATCTGTGTCTGCACCCACACCTCGGTGCCCAGCtt                                                 >  8:77370/1‑149 (MQ=255)                                                                                                    cccGCCAGGT‑CCACGTGCAGTAACATCTGCTCGCTTGCCGCCAGCACCTCGTCGAACCCTGCCCGGTGCAGGC‑TGTGATACACGTGAAGACGCTTGCGATCAAAGCCGAGGATCTGTGTCTGCACCCACACCTCGGTGCCCAGCTTCAc                                              >  5:315356/1‑149 (MQ=255)                                                                                                      cGCCAGGT‑CCACGTGCAGTAACATCTGCTCGCTTGCCGCCAGCACCTCGTCGAACCCTGCCCGGTGCAGGC‑TGTGATACACGTGAAGACGCTTGCGATCAAAGCCGAGGATCTGTGTCTGCACCCACACCTCGGTGCCCAGCTTCACCt                                            >  3:146152/1‑149 (MQ=255)                                                                                                           ggT‑CCACGTGCAGTAACATCTGCTCGCTTGCCGCCAGCACCTCGTCGAACCCTGCCCGGTGCAGGC‑TGTGATACACGTGAAGACGCTTGCGATCAAAGCCGAGGATCTGTGTCTGCACCCACACCTCGGTGCCCAGCTTCACCTCGTg                                        >  6:118838/1‑148 (MQ=255)                                                                                                                 aCGTGCAGTAACATCTGCTCGCTTGCCGCCAGCACCTCGTCGAACCCTGCCCGGTGCAGGCAAATGATACACGTGAAGACGCTTGCGATAAAAGCCGAGGATATGTGTCTGGCCCCACACCTCGGTGCCCCGCTTCCCCTCGTGCaaa                                    >  1:93879/1‑148 (MQ=255)                                                                                                                         tAACATCTGCTCGCTTGCCGCCAGCACCTCGTCGAACCCTGCCCGGTGCAGGC‑TGTGATACACGTGAAGACGCTTGCGATCAAAGCCGAGGATCTGTGTCTGCACCCACACCTCGGTGCCCAGCTTCACCTCGTGCAAATAATTGatat                          <  5:3829/149‑1 (MQ=255)                                                                                                                         tAACATCTGCTCGCTTGCCGCCAGCACCTCGTCGAACCCTGCCCGGTGCAGGC‑TGTGATACACGTGAAGACGCTTGCGATCAAAGCCGAGGATCTGTGTCTGCACCCACACCTCGGTGCCCAGCTTCACCTCGTGCAAATAATTGatat                          <  4:205434/149‑1 (MQ=255)                                                                                                                               cTGCTCGCTTGCCGCCAGCACCTCGTCGAACCCTGCCCGGTGCAGGC‑TGTGATACACGTGAAGACGCtt                                                                                                    >  1:215345/1‑69 (MQ=255)                                                                                                                               cTGCTCGCTTGCCGCCAGCACCTCGTCGAACCCTGCCCGGTGCAGGC‑TGTGATACACGTGAAGACGCtt                                                                                                    <  2:215345/69‑1 (MQ=255)                                                                                                                                tGCTCGCTTGCCGCCAGCACCTCGTCGAACCCTGCCCGGTGCAGGC‑TGTGATACACGTGAAGACGCTTGCGATCAAAGCCGAGGATCTGTGTCTGCACCCACACCTCGGTGCCCAGCTTCACCTCGTGCAAATAATTGATATGCGCCTc                   >  3:143410/1‑149 (MQ=255)                                                                                                                                  cTCGCTTGCCGCCAGCACCTCGTCGAACCCTGCCCGGTGCAGGC‑TGTGATACACGTGAAGACGCTTGCGATCAAAGCCGAGGATCTGTGTCTGCACCCACACCTCGGTGCCCAGCTTCACCTCGTGCAAATAATTGATATGCGCCTc                   >  7:108897/1‑147 (MQ=255)                                                                                                                                    cGCTTGCCGCCAGCACCTCGTCGAACCCTGCCCGGTGCAGGC‑TGTGATACACGTGAAGACGCTTGCGATCAAAGCCGAGGATCTGTGTCTGCACCCACACCTCGGTGCCCAGCTTCACCTCGTGCAAATAATTGATATGCGCCTCCAGc               >  6:32475/1‑149 (MQ=255)                                                                                                                                         gccgccAGCACGTCGTCGAACCCTGCCCGGTGCAGGG‑TGTGATACACGTGAAGACGCTTGCGTTCAAAGCCGAGGATCTGTGTCTGCACCCACAGCTCGGTGCCGAGCTTCACCTCGTGCAATTAATTGATATTCGCCTCCAGCGTGa           <  5:198384/148‑1 (MQ=255)                                                                                                                                          ccgccAGCACCTCGTCGAACCCTGCCCGGTGCAGGC‑TGTGATACACGTGAAGACGCTTGCGATCAAAGCCGAGGATCTGTGTCTGCACCCACACCTCGGTGCCCAGCTTCACCTCGTGCAAATAATTGATATGCGCCTCCAGCGTGaa          >  4:213503/1‑148 (MQ=255)                                                                                                                                           cgccAGCACCTCGTCGAACCCTGCCCGGTGCAGGC‑TGTGATACACGTGATGACGCTTGCGATCAAAGCCGAGGATCTGTGTCTGCACCCACACCTCGGTGCCCAGCTTCACCTCGTGCAAATAATTGATATGCGCCTCCAGCGTGaa          >  7:139117/1‑147 (MQ=255)                                                                                                                                           cgccAGCACCTCGTCGAACCCTGCCCGGTGCAGGC‑TGTGATACACGTGAAGACGCTTGCGATCAAAGCCGAGGATCTGTGTCTGCACCCACACCTCGGTGCCCAGCTTCACCTCGTGCAAATAATTGATATGCGCCTCCAGCGTGaa          >  7:137484/1‑147 (MQ=255)                                                                                                                                             ccAGCACCTCGTCGAACCCTGCCCGGTGCAGGC‑TGTGATACACGTGAAGACGCTTGCGATCAAAGCCGAGGATCTGTGTCTGCACCCACACCTCGGTGCCCAGCTTCACCTCGTGCAAATAATTGATATGCGCCTCCAGCGTGAACAGc      <  4:146152/149‑1 (MQ=255)                                                                                                                                                  acctCGTCGAACCCTGCCCGGTGCAGGC‑TGTGATACACGTGAAGACGCTTGCGATCAAAGCCGAGGATCTGTGTCTGCACCCACACCTCGGTGCCCAGCTTCACCTCGTGCAAATAATTGATATGCGCCTCCAGCGTGAACAGCGAGt  >  6:166872‑M2/5‑148 (MQ=255)                                                                                                                                                      |                                                                                                                                                 GTACGCCCCATATATTGCGGCGCCTGCGCACCCTCCTGTTGCTCTACCAAGTGATTCAACCGGCAAACAGTCGTGTGCCCAAAAGGTGCTGACTGCGGCCCCGCCAGGT‑CCACGTGCAGTAACATCTGCTCGCTTGCCGCCAGCACCTCGTCGAACCCTGCCCGGTGCAGGC‑TGTGATACACGTGAAGACGCTTGCGATCAAAGCCGAGGATCTGTGTCTGCACCCACACCTCGGTGCCCAGCTTCACCTCGTGCAAATAATTGATATGCGCCTCCAGCGTGAACAGCGAGT  >  NC_002947/362055‑362346

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.