New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 614297	20 (0.380)	5 (0.130)	4/204	NT	23.1%	intergenic (‑116/+62)	dxs/ispA	1‑deoxyxylulose‑5‑phosphate synthase/farnesyl diphosphate synthase
	?	NC_002947	= 614313	18 (0.450)					intergenic (‑132/+46)	dxs/ispA	1‑deoxyxylulose‑5‑phosphate synthase/farnesyl diphosphate synthase

GCGGGGGATCTCTTGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCG‑TCGGCAAATTCAAGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTGCAGTGCGGCCAGCGCC  >  NC_002947/614152‑614443                                                                                                                                                  |                                                                                                                                                    gcgGGGGAGCTCTTGAATCGTCCTGGGCATCAGCAGAGGCGTTATAGGTGGGTGCAGACGCGTCAGGTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGCGCGGGTTTACCCGCGAATGCG‑TCg                                                                                                                                                 <  3:249484/149‑1 (MQ=255)       gATCTCTTGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCG‑GCGGGAAAt                                                                                                                                           >  4:181135/1‑149 (MQ=255)          ctctTGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCG‑TCGGCAAATTc                                                                                                                                         >  6:41804/1‑148 (MQ=255)                aaaCGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCG‑TCGGCAAATTCAAGATc                                                                                                                                   >  8:156027‑M2/1‑147 (MQ=255)                       gtGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCG‑TCGGCAAATTCAAGATcgcattcgc                                                                                                                           >  1:245278‑M2/1‑140 (MQ=255)                        ttggcaTGAGGCGATTCGTTATATGTGTGTGAAGACGCGGGAGTTTACCCCATTGTGGGAAATGTGCCCATTCTACGACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGatcttgaatttgccgacgcattcgcg                                                                                                                           <  3:146855‑M1/147‑27 (MQ=255)                          ggCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGTCCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGatcttgaatttgccgacgcattcgcgg                                                                                                                          <  3:263867‑M1/148‑28 (MQ=255)                          ggCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCG‑TCGGCAAATTCAAGATcgcattcgcgg                                                                                                                         >  5:146453‑M2/1‑137 (MQ=255)                                aGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCG‑TCGGCAAATTCAAGATcgcattcgcgggtaaacc                                                                                                                  >  5:41804‑M2/1‑131 (MQ=255)                                    cagTCGTTATAGGTGTTTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCCACCACAGGTTACGCGGCCCCCTGTAGGATCGGGATTACCCGCGAATGCG‑TCGGCAAATTCAAGATcgcattcgcgggtaaacccgat                                                                                                              >  3:181135‑M2/2‑127 (MQ=255)                                         gTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGatcttgaatttgccgacgcattcgcgg                                                                                                                          <  2:228463‑M1/133‑28 (MQ=255)                                         gTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGatcttgaatttgccgacgcattcgcgg                                                                                                                          >  1:228463‑M1/1‑106 (MQ=255)                                         gTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCG‑TCGGCAAATTCAAGATcgcattcgcgg                                                                                                                         <  6:14979‑M2/133‑12 (MQ=255)                                         gTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCG‑TCGGCAAATTCAAGATcgcattcgcgg                                                                                                                         >  5:14979‑M2/1‑122 (MQ=255)                                          ttATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCG‑TCGGCAAATTCAAGATcgcattcgcgggtaaac                                                                                                                   <  7:71538‑M2/138‑18 (MQ=255)                                          ttATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCG‑TCGGCAAATTCAAGATcgcattcgcgggtaaac                                                                                                                   >  8:71538‑M2/1‑121 (MQ=255)                                                     tgAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCG‑TCGGCAAATTCaa                                                                                                                                       <  6:225059/107‑1 (MQ=255)                                                     tgAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCG‑TCGGCAAATTCaa                                                                                                                                       >  5:225059/1‑107 (MQ=255)                                                     tgAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCG‑TCGGCAAATTCAAGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTg                                                                                              >  7:83739/1‑148 (MQ=255)                                                             cgGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCG‑TCGGCAAATTCAAGATcgcattcgcgggtaaacccgat                                                                                                              <  8:73843‑M2/124‑23 (MQ=255)                                                             cgGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCG‑TCGGCAAATTCAAGATcgcattcgcgggtaaacccgat                                                                                                              >  7:73843‑M2/1‑102 (MQ=255)                                                                    ttACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGatcttgaatttgccgacgcattcgc                                                                                                                            <  8:102484‑M1/104‑26 (MQ=255)                                                                       ccccATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCG‑TCGGCAAATTCAAGATcgcattcgcgg                                                                                                                         >  7:155444‑M2/1‑92 (MQ=255)                                                                       ccacATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCG‑TCGGCAAATTCAAGATCGCATTCGCgg                                                                                                                         >  8:155444/4‑103 (MQ=255)                                                                                 ggAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCG‑TCGGCAAATTCaa                                                                                                                                       >  6:147112/1‑79 (MQ=255)                                                                                 ggAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCG‑TCGGCAAATTCaa                                                                                                                                       <  5:147112/79‑1 (MQ=255)                                                                                   aaaaGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCG‑TCGGCAAATTCAAGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAAtata                                                               <  8:83739/149‑1 (MQ=255)                                                                                          cccATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGCATGGG‑GCGGGCAATTGAAGATGGCATTGGCGGGGAAACCCGCGCCTACAGGGGTAGGTGGAGGTGTTTAGTTTGCGCGTTGGGCAATATTACGCGcc                                                        >  4:193622/1‑149 (MQ=255)                                                                                                                    cccTGTAGGATCGGGTTTAAACCCGAATGCG‑GCGGCAAATTAAAGATCGCATTAGCGGGTAAAACCGATACGACAGGGATAGGTGAAGCTGTTTTGTTTAGGCGTTAGACAAAATAACGCGCCAAGGCCCGCCGCGGCTCGGCCgtttg                              >  4:6368/1‑148 (MQ=255)                                                                                                                            gATCGGGTTTACCCGCGAATGCG‑TCGGCAAATTCAAGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAAcc                      >  6:67494/1‑149 (MQ=255)                                                                                                                             aTCGGGTTTACCCGCGAATGCGatcttgaatttgccgacgcattcgcgggtaatcccgatcctacagggggccgcgtaacctgtggtggaatgggcacttttcccacaatggggtaaactgccgcgtcttcaaacacctataacgactg                      >  3:181135‑M1/1‑22 (MQ=255)                                                                                                                             aTCGGGTTTACCCGCGAATGCGatcttgaatttgccgacgcattcgcgggtaaacccgatcctacagggggccgcgtaacctgtggtcgaatgggcacttttcccacaatggggtaaactgccg                                               >  7:73843‑M1/1‑22 (MQ=255)                                                                                                                             aTCGGGTTTACCCGCGAATGCGatcttgaatttgccgacgcattcgcgggtaaacccgatcctacagggggccgcgtaacctgtggtcgaatgggcacttttcccacaatggggtaaactgccg                                               <  8:73843‑M1/124‑103 (MQ=255)                                                                                                                              tCGGGTTTACCCGCGAATGGG‑TCGGCAAATTCAAGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCt                    >  5:48220/1‑149 (MQ=255)                                                                                                                                 ggTTTACCCGCGAATGCGatcttgaatttgccgacgcattcgcgggtaaacccgatcctacagggggccgcgtaacctgtggtcgaatgggcacttttcccacaatggggtaaactgccgcgtcttcacacacctataacgactcgcct                  >  5:41804‑M1/1‑18 (MQ=255)                                                                                                                                  gTTTACCCGCGAATGCGatcttgaatttgccgacgcattcgcgggtaaacccgatcctacagggggccgcgtaacctgtggtcgaatgggcacttttcccacaatggggtaaactgccgcgtcttcacacacctataa                            <  7:71538‑M1/138‑122 (MQ=255)                                                                                                                                  gTTTACCCGCGAATGCGatcttgaatttgccgacgcattcgcgggtaaacccgatcctacagggggccgcgtaacctgtggtcgaatgggcacttttcccacaatggggtaaactgccgcgtcttcacacacctataa                            >  8:71538‑M1/1‑17 (MQ=255)                                                                                                                                  gTTTACCCGCGAATGCGATCTTGAATTTGCCGA‑CGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTg                  >  7:152075/1‑147 (MQ=21)                                                                                                                                  gTTTACCCGCGAATGCG‑TCGGCAAATTCAAGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTg                  >  3:141430/1‑147 (MQ=255)                                                                                                                                     tACCCGCGAATGCG‑TCGGCAAATTCAAGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTGCAGTg             >  6:174080/1‑149 (MQ=255)                                                                                                                                        ccGCGAATGCGatcttgaatttgccgacgcattcgcgggtaaacccgatcctacagggggccgcgtaacctgtggtcgaatgggcacttttcccacaatggggtaaactgccgcgtcttcacacacctataacgactcgcctgatgcc            >  5:146453‑M1/1‑11 (MQ=255)                                                                                                                                        ccGCGAATGCGatcttgaatttgccgacgcattcgcgggtaaacccgatcctacagggggccgcgtaacctgtggtcgaatgggcacttttcccacaatggggtaaactgccgcgtcttcacacacctataac                           <  6:14979‑M1/133‑123 (MQ=255)                                                                                                                                        ccGCGAATGCGatcttgaatttgccgacgcattcgcgggtaaacccgatcctacagggggccgcgtaacctgtggtcgaatgggcacttttcccacaatggggtaaactgccgcgtcttcacacacctataac                           >  5:14979‑M1/1‑11 (MQ=255)                                                                                                                                        ccGCGAATGCGatcttgaatttgccgacgcattcgcgggtaaacccgatcctacagggggccgcgtaacctgtggtcgaatgggcacttttcccacaatgggg                                                         >  7:155444‑M1/1‑11 (MQ=255)                                                                                                                                        ccGCGAATGCG‑TCGGCAAATTCAAGATcgcattcgcgggtaaacccgatcctacagggggccgcgtaacctgtggtcgaatgggcacttttcccacaatggggtaaactgccgcgtcttcacacacctataac                          >  1:228463‑M2/1‑27 (MQ=255)                                                                                                                                        ccGCGAATGCG‑TCGGCAAATTCAAGATcgcattcgcgggtaaacccgatcctacagggggccgcgtaacctgtggtcgaatgggcacttttcccacaatggggtaaactgccgcgtcttcacacacctataac                          <  2:228463‑M2/133‑107 (MQ=255)                                                                                                                                        ccGCGAATGCG‑TCGGCAAATTCAAGATcgcattcgcgggtaaacccgatcctacagggggccgcgtaacctgtggacgaatgggcacttttcccacaatggggtaaactgccgcgtcttcacacacctataacgactcgcctgatgcc           <  3:263867‑M2/148‑122 (MQ=255)                                                                                                                                        ccGCGAATGCG‑TCGGCAAATTCAAGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCtt                                 >  5:306017/1‑126 (MQ=255)                                                                                                                                        ccGCGAATGCG‑TCGGCAAATTCAAGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCtt                                 <  6:306017/126‑1 (MQ=255)                                                                                                                                        ccGCGAATGCG‑TCGGCAAATTCAAGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTGCAGTGctg          >  8:175486/1‑147 (MQ=255)                                                                                                                                        ccGCGAATGCG‑TCGGCAAATTCAAGATCGCATTCGCGGGTAAACCCGATCCTACAGGAATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTGCAGTGCgg          >  1:24872/1‑149 (MQ=255)                                                                                                                                         cgcgAATGCG‑TCGGCAAATTCAAGATcgcattcgcgggtaaacccgatcctacagggggccgcgtaacctgtcgtagaatgggcacatttcccacaatggggtaaactcccgcgtcttcacacacatataacgaatcgcctcatgccaa         <  3:146855‑M2/149‑124 (MQ=255)                                                                                                                                          gcgAATGCGatcttgaatttgccgacgcattcgcgggtaaacccgatcctacagggggccgcgtaacctgtggtcgaatgggcacttttcccacaatggggtaaactgccgcgtcttcacacacctataacgactcgcctgatgcccac         >  1:245278‑M1/1‑9 (MQ=255)                                                                                                                                          gcgAATGCG‑TCGGCAAATTCAAGATcgcattcgcgggtaaacccgatcctacagggggccgcgtaacctgtggtcgaatgggcacttttcccacaatggggtaa                                                     <  8:102484‑M2/104‑80 (MQ=255)                                                                                                                                                  gatcttgaatttgccgacgcattcgcgggtaaacccgatcctacagggggccgcgtaacctgtggtcgaatgggcacttttcccacaatggggtaaactgccgcgtcttcacacacctataacgactcgcctgatgcccacgacgttt  >  8:156027‑M1/1‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                    GCGGGGGATCTCTTGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCG‑TCGGCAAATTCAAGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTGCAGTGCGGCCAGCGCC  >  NC_002947/614152‑614443

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.