| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 614297 | 20 (0.380) | 5 (0.130) | 4/204 | NT | 23.1% | intergenic (‑116/+62) | dxs/ispA | 1‑deoxyxylulose‑5‑phosphate synthase/farnesyl diphosphate synthase |
| ? | NC_002947 | = 614313 | 18 (0.450) | intergenic (‑132/+46) | dxs/ispA | 1‑deoxyxylulose‑5‑phosphate synthase/farnesyl diphosphate synthase | |||||
AAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCG‑TCGGCAAATTCAAGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTGCAGTGCGGCCAGCGCCTGGTCGCGCAGTTCGATT > NC_002947/614167‑614461 | aaaCGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCG‑TCGGCAAATTCAAGATc > 8:156027‑M2/1‑147 (MQ=255) gtGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCG‑TCGGCAAATTCAAGATcgcattcgc > 1:245278‑M2/1‑140 (MQ=255) ggCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCG‑TCGGCAAATTCAAGATcgcattcgcgg > 5:146453‑M2/1‑137 (MQ=255) aGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCG‑TCGGCAAATTCAAGATcgcattcgcgggtaaacc > 5:41804‑M2/1‑131 (MQ=255) cagTCGTTATAGGTGTTTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCCACCACAGGTTACGCGGCCCCCTGTAGGATCGGGATTACCCGCGAATGCG‑TCGGCAAATTCAAGATcgcattcgcgggtaaacccgat > 3:181135‑M2/2‑127 (MQ=255) gTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCG‑TCGGCAAATTCAAGATcgcattcgcgg < 6:14979‑M2/133‑12 (MQ=255) gTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCG‑TCGGCAAATTCAAGATcgcattcgcgg > 5:14979‑M2/1‑122 (MQ=255) ttATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCG‑TCGGCAAATTCAAGATcgcattcgcgggtaaac > 8:71538‑M2/1‑121 (MQ=255) ttATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCG‑TCGGCAAATTCAAGATcgcattcgcgggtaaac < 7:71538‑M2/138‑18 (MQ=255) tgAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCG‑TCGGCAAATTCAAGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTg > 7:83739/1‑148 (MQ=255) cgGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCG‑TCGGCAAATTCAAGATcgcattcgcgggtaaacccgat < 8:73843‑M2/124‑23 (MQ=255) cgGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCG‑TCGGCAAATTCAAGATcgcattcgcgggtaaacccgat > 7:73843‑M2/1‑102 (MQ=255) ccccATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCG‑TCGGCAAATTCAAGATcgcattcgcgg > 7:155444‑M2/1‑92 (MQ=255) ccacATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCG‑TCGGCAAATTCAAGATCGCATTCGCgg > 8:155444/4‑103 (MQ=255) aaaaGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCG‑TCGGCAAATTCAAGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAAtata < 8:83739/149‑1 (MQ=255) cccATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGCATGGG‑GCGGGCAATTGAAGATGGCATTGGCGGGGAAACCCGCGCCTACAGGGGTAGGTGGAGGTGTTTAGTTTGCGCGTTGGGCAATATTACGCGcc > 4:193622/1‑149 (MQ=255) cccTGTAGGATCGGGTTTAAACCCGAATGCG‑GCGGCAAATTAAAGATCGCATTAGCGGGTAAAACCGATACGACAGGGATAGGTGAAGCTGTTTTGTTTAGGCGTTAGACAAAATAACGCGCCAAGGCCCGCCGCGGCTCGGCCgtttg > 4:6368/1‑148 (MQ=255) gATCGGGTTTACCCGCGAATGCG‑TCGGCAAATTCAAGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAAcc > 6:67494/1‑149 (MQ=255) tCGGGTTTACCCGCGAATGGG‑TCGGCAAATTCAAGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCt > 5:48220/1‑149 (MQ=255) gTTTACCCGCGAATGCGATCTTGAATTTGCCGA‑CGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTg > 7:152075/1‑147 (MQ=21) gTTTACCCGCGAATGCG‑TCGGCAAATTCAAGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTg > 3:141430/1‑147 (MQ=255) tACCCGCGAATGCG‑TCGGCAAATTCAAGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTGCAGTg > 6:174080/1‑149 (MQ=255) ccGCGAATGCG‑TCGGCAAATTCAAGATcgcattcgcgggtaaacccgatcctacagggggccgcgtaacctgtggtcgaatgggcacttttcccacaatggggtaaactgccgcgtcttcacacacctataac > 1:228463‑M2/1‑27 (MQ=255) ccGCGAATGCG‑TCGGCAAATTCAAGATcgcattcgcgggtaaacccgatcctacagggggccgcgtaacctgtggtcgaatgggcacttttcccacaatggggtaaactgccgcgtcttcacacacctataac < 2:228463‑M2/133‑107 (MQ=255) ccGCGAATGCG‑TCGGCAAATTCAAGATcgcattcgcgggtaaacccgatcctacagggggccgcgtaacctgtggacgaatgggcacttttcccacaatggggtaaactgccgcgtcttcacacacctataacgactcgcctgatgcc < 3:263867‑M2/148‑122 (MQ=255) ccGCGAATGCG‑TCGGCAAATTCAAGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCtt > 5:306017/1‑126 (MQ=255) ccGCGAATGCG‑TCGGCAAATTCAAGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCtt < 6:306017/126‑1 (MQ=255) ccGCGAATGCG‑TCGGCAAATTCAAGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTGCAGTGctg > 8:175486/1‑147 (MQ=255) ccGCGAATGCG‑TCGGCAAATTCAAGATCGCATTCGCGGGTAAACCCGATCCTACAGGAATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTGCAGTGCgg > 1:24872/1‑149 (MQ=255) cgcgAATGCG‑TCGGCAAATTCAAGATcgcattcgcgggtaaacccgatcctacagggggccgcgtaacctgtcgtagaatgggcacatttcccacaatggggtaaactcccgcgtcttcacacacatataacgaatcgcctcatgccaa < 3:146855‑M2/149‑124 (MQ=255) gcgAATGCG‑TCGGCAAATTCAAGATcgcattcgcgggtaaacccgatcctacagggggccgcgtaacctgtggtcgaatgggcacttttcccacaatggggtaa < 8:102484‑M2/104‑80 (MQ=255) ggCAAATTCAAGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTGCAGTGCGGCCAGCGCCTGGTc < 5:174080/149‑1 (MQ=255) aaaTTCAAGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTGAAGTGCGGCCAGCGCCTGGTcgcg > 2:179898/1‑149 (MQ=255) aaaTTCAAGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGGGAGACAATATAACGCGCCAATGCCCGCAGCGGCTCGGCCTTTTCGCAGACCCCTTGCAGTGCGGCCAGCGCCTGGTcgcg > 7:53086/1‑149 (MQ=255) aTTCAAGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTGCAGTGCg < 7:67453/130‑1 (MQ=255) aTTCAAGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTGCAGTGCg > 8:67453/1‑130 (MQ=255) tCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTGTAGTGCGGCCAGCGCCTGGTCGCGCAGTTCGAtt < 1:179898/149‑1 (MQ=255) tCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTGCAGTGCGGCCAGCGCCTGGTCGCGCAGTTCGAtt < 3:6368/149‑1 (MQ=255) | AAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCG‑TCGGCAAATTCAAGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTGCAGTGCGGCCAGCGCCTGGTCGCGCAGTTCGATT > NC_002947/614167‑614461 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |