New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	674322 =	42 (0.810)	3 (0.060)	3/248	NT	7.6%	intergenic (‑214/+92)	PP_0575/PP_0576	membrane protein/lipoprotein
	?	NC_002947	674363 =	34 (0.700)					intergenic (‑255/+51)	PP_0575/PP_0576	membrane protein/lipoprotein

ATAGACGGGAACGTGCGGGGGAGTGCGGTTGGCATCGGAAAAAAGGCGTGCGTGGAATGGATTTTGTCGTAGCTGACACAGGCCAGGCCGGTGACGCAGTCGTACTCGTAATCGCCATCTATGTAGGCGTGGGGTCACCCGCGAACATCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCGGGTAAACCCGCT‑CCCGCCGGGCCACGGTGCATGCAAAAGCCGCGTTCCAACGCTATTTTTTGCTGCCCGGTGGGTAGTTGCCCAGCACCTTGGCCACGGTATTGCG  >  NC_002947/674174‑674467                                                                                                                                                     |                                                                                                                                                   gaacaactacccgccaagcccggaagaacgcaacagcgcaatccgcaataccgtggccaaggtgctgggcaactacccaccgggcagcaaaaaatagcgttggaacgcggcttttgcatgcaccgtggcccggcgggagcgggtttacc                                                                                                                                                    <  2:294797‑M1/1‑1 (MQ=255)   aGACGGGAACGTGCGGGGGAGTGCGGTTGGCATCGGAAAAAAGGCCTGCGTGGAATGGATTTTGTCGTAGCTGACACAGGCCAGGCCGGTGACGCAGTCGTACTCGTAATCGCCATCTATGTAGGAGTGGGGTCACACGCGAACATCcg                                                                                                                                                  >  3:206694/1‑149 (MQ=255)     aactacccgccaagcccggaagaacgcaacagcgcaatccgcaataccgtggccaaggtgctgggcaactacccaccgggcagcaaaaaatagcgttggaacgcggcttttgcatgcaccgtggcccggcgggagcgggtttacCcgcg                                                                                                                                                >  4:173970‑M1/145‑149 (MQ=255)       gggAACGTGCGGGGGAGTGCGGTTGGCATCGGAAAAAAGGCGTGCGTGGAATGGATTTTGTCGTAGCTGACACAGGCCAGGCCGGTGACGCAGTCGTACTCGTAATCGCCATCTATGTAGGCGTGGGGTCACCCGCGAACATCCGCGaa                                                                                                                                              >  6:35328/1‑149 (MQ=255)       ctacccgccaagcccggaagaacgcaacagcgcaatccgcaataccgtggccaaggtgctgggcaactacccaccgggcagcaaaaaatagcgttggaacgcggcttttgcatgcaccgtggcccggcgggagcgggtttaccc                                                                                                                                                   >  6:329114‑M1/143‑144 (MQ=255)       ctacccgccaagcccggaagaacgcaaaagcgcaatccgcaataccgtggccaaggtgctgggcaactacccaccgggcagcaaaaaatagcgttggaacgcggcttttgcatgcaccgtggcccggcgggagcgggtttaccc                                                                                                                                                   <  5:329114‑M1/2‑1 (MQ=255)        tacccgccaagcccggaagaacgcaacagcgcaatccgcaataccgtggccaaggtgctgggcaactacccaccgggcagcaaaaaatagcgttggaacgcggcttttgcatgcaccgtggcccggcgggagcgggtttacCCGCGAAg                                                                                                                                             <  4:34569‑M1/8‑1 (MQ=255)          cccgccaagcccggaagaacgcaacagcgcaatccgcaataccgtggccaaggtgctgggcaactacccaccgggcagcaaaaaatagcgttggaacgcggcttttgcatgcaccgtggcccggcgggagcgggtttacCCGCGAAg                                                                                                                                             >  1:71261‑M1/140‑147 (MQ=255)          cccgccaagcccggaagaacgcaacagcgcaatccgcaataccgtggccaaggtgctgggcaactacccaccgggcagcaaaaaatagcgttggaacgcggcttttgcatgcaccgtggcccggcgggagcgggtttacCCGCGAAGc                                                                                                                                            <  5:283767‑M1/9‑1 (MQ=255)                 gggggAGTGCGGTTGGCATCGGAAAAAAGGCTTGCGTTTAATGTATTTTGTCTTAGCTGACACAGGCCAGTCCGGTGACGCAGTCGTACTCGTAATCGCCATCTATGTAGGCGTGGGGTCACCCGCGAACATCCGCGAAGCCTGTGCCa                                                                                                                                    <  8:172677/149‑1 (MQ=255)                 gggggAGTGCGGTTGGCATCGGAAAAAAGGCGTGCGTGGAATGGATTTTGTCGTAGCTGACACAGGCCAGGCCGGTGACGCAGTCGTACTCGTAATCGCCATCTATGTAGGCGTGGGGTCACCCGCGAACATCCGCGAAGCCGGTGCCa                                                                                                                                    >  8:200783/1‑149 (MQ=255)                  ggggAGTGCGGTTGGCATCGGAAAAAAGGCGTGCGTGGAATGGATTTTGTCGTAGCTGACACAGGCCAGTCCGGTGACGCAGTCGTACTCGTAATCGCCATCTATGTAGGCGTGGGGTCACCCGCGAACATCCGCGAAGCCGGTGCCAt                                                                                                                                   <  5:731/149‑1 (MQ=255)                        tGCGGTTGGCATCGGAAAAAAGGCGTGCGTGGAATGGATTTTGTCGTAGCTGACACAGGCCAGGCCGGTGACGCAGTCGTACTCGTAATCGCCATCTATGTAGGCGTGGGGTCACCCGCGAACATCCGCGAAGCCGGTGCCATGCACCg                                                                                                                             >  6:63309/1‑149 (MQ=255)                        tGCGGTTGGCATCGGAAAAAAGGCGTGCGTGGAATGGATTTTGTCGTAGCTGACACAGGCCAGGCCGGTGACGCAGTCGTACTCGTAATCGCCATCTATGTAGGCGTGGGGTCACCCGCGAACATCCGCGAAGCCGGTGCCATGCACCg                                                                                                                             <  2:141056/149‑1 (MQ=255)                          cGGGTGGCAGCGGAAAAAAGGCGTGCGTGGAATGGATTTTGTCGTAGCTGACCCAGGCCAGGCCGGTGACGCAGTCGTACTCGTAATCGCCATCTATGTAGGCGTGGGGTCACCCGCGAACATCCGCGATGCCGGTGCCATGCACCggg                                                                                                                           <  7:301228/149‑1 (MQ=255)                           ggTTGGCATCGGAAAAAAGGCGTGCGTGGAATGGATTTTGTCGTAGCTGACACAGGCCAGGCCGGTGACGCAGTCGTACTCGTAATCGCCATCTATGTAGGCGTGGGGTCACCCGCGAACATCCGCGAAGCCGGTGCCATGCACCGGGc                                                                                                                          <  5:35328/149‑1 (MQ=255)                                 cATCGGAAAAAAGGCGTGCGTGGAATGGATTTTGTCGTAGCTGACACAGGCCAGGCCGGTGACGCAGTCGTACTCGTAATCGCCATCTATGTAGGCGTGGGGTCACCCGCGAACATCCGCGAAGCCGGTGCCATGCACCGGGCCAATTg                                                                                                                    <  2:143201/149‑1 (MQ=255)                                  aTCGGAAAAAAGGCGTGCGTGGAATGGATTTTGTCGTAGCTGACACAGGCCAGGCCGGTGACGCAGTCGTACTCGTAATCGCCATCTATGTAGGCGTGGGGTCACCCGCGAACATCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGc                                                                                                                   >  6:304948/1‑149 (MQ=255)                                         atccgcaataccgtggccaaggtgctgggcaactacccaccgggcagcaaaaaatagcgttggaacgcggcttttgcatgcaccgtggcccggcgggagcgggtttacCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCgg                                                                                                            >  1:250385‑M1/109‑149 (MQ=255)                                         aaaaGGCGTGCGTGGAATGGATTTTGTCGTAGCTGACACAGGCCAGGCCGGTGACGCAGTCGTACTCGTAATCGCCATCTATGTAGGCGTGGGGTCACCCGCGAACATCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCgg                                                                                                            >  6:107230/1‑149 (MQ=255)                                          tccgcaataccgtggccaaggtgctgggcaactacccaccgggcagcaaaaaatagcgttggaacgcggcttttgcatgcaccgtggcccggcgggagcgggtttacCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCggg                                                                                                           <  3:47664‑M1/42‑1 (MQ=255)                                           aaGGCGTGCGTGGAATGGATTTTGTCGTAGCTGACACAGGCCAGGCCGGTGACGCAGTCGTACTCGTAATCGCCATCTATGTAGGCGTGGGGTCACCCGCGAACATCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCggg                                                                                                           >  2:243466/1‑148 (MQ=255)                                                    gtgGAATGGATTTTGTCGTAGCTGACACAGGCCAGGCCGGTGACGCAGTCGTACTCGTAATCGCCATCTATGTAGGCGTGGGGTCACCCGCGAACATCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCGGGTAAACCCGCt                                                                                                 <  2:141523/149‑1 (MQ=255)                                                    gtgGAATGGATTTTGTCGTAGCTGACACAGGCCAGGCCGGTGACGCAGTCGTACTCGTAATCGCCATCTATGTAGGCGTGGGGTCACCCGCGAACATCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCGGGTAAACCCGCt                                                                                                 >  1:8765/1‑149 (MQ=255)                                                    cgtggccaaggtgctgggcaactacccaccgggcagcaaaaaatagcgttggaacgcggcttttgcatgcaccgtggcccggcgggagcgggtttacCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCGGGTAAACCCGCt                                                                                                 >  4:47664‑M1/98‑149 (MQ=255)                                                       gAATGGATTTTGTCGTAGCTGACACAGGCCAGGCCGGTGACGCAGTCGTACTCGTAATCGCCATCTATGTAGGCGTGGGGTCACCCGCGAACATCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCGGGTAAACCCGCT‑cc                                                                                              <  7:287579/148‑1 (MQ=255)                                                          tGGATTTTGTCGTAGCTGACACAGGCCAGGCCGGTGACGCAGTCGTACTCGTAATCGCCATCTATGTAGGCGTGGGGTCACCCGCGAACATCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCGGGTAAACCCGCT‑Cccgcc                                                                                          >  8:219985/1‑149 (MQ=255)                                                            gATTTTGTCGTAGCTGACACAGGCCAGGCCGGTGACGCAGTCGTACTCGTAATCGCCATCTATGTAGGCGTGGGGTCACCCGCGAACATCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCGGGTAAACCCGCT‑CCCGCCgg                                                                                        <  5:107230/149‑1 (MQ=255)                                                               tttGTCGTAGCTGACACAGGCCAGGCCGGTGACGCAGTCGTACTCGTAATCGCCATCTATGTAGGCGTGGGGTCACCCGCGAACATCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCGGGTAAGCCCGCT‑Cccgcggacc                                                                                      >  1:113409/1‑143 (MQ=255)                                                                   tCGTAGCTGACACAGGCCAGGCCGGTGACGCAGTCGTACTCGTAATCGCCATCTATGTAGGCGTGGGGTCACCCGCGAACATCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCGGGTAAACCCGCT‑CCCGCCGGGCCACg                                                                                  <  2:8765/148‑1 (MQ=255)                                                                     gTAGCTGACACAGGCCAGGCCGGTGACGCAGTCGTACTCGTAATCGCCATCTATGTAGGCGTGGGGTCACCCGCGAACATCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCGGGTAAACCCGCT‑CCCGCCGGGCCACGGt                                                                                <  5:304948/148‑1 (MQ=255)                                                                        gCTGACACAGGCCAGGCCGGTGACGCAGTCGTACTCGTAATCGCCATCTATGTAGGCGTGGGGTCACCCGCGAACATCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCGGGTAAACCCGCT‑CCCGCCGGGCCACGGtgcat                                                                            >  6:100268/1‑149 (MQ=255)                                                                          tGACACAGGCCAGGCCGGTGACGCAGTCGTACTCGTAATCGCCATCTATGTAGGCGTGGGGTCACCCGCGAACATCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCGGGTAAACCCGCT‑CCCGCCGGGCCACGGtgcatg                                                                           >  4:88743/1‑148 (MQ=255)                                                                             cacaGGCCAGGCCGGTGACGCAGTCGTACTCGTAATCGCCATCTATGTAGGCGTGGGGTCACCCGCGAACATCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCGGGTAAACCCGCTCCCCGCCGGGCCACGGTGCATGCaa                                                                        <  7:200783/149‑1 (MQ=255)                                                                              acaGGCCAGGCCGGTGACGCAGTCGTACTCGTAATCGCCATCTATGTAGGCGTGGGGTCACCCGCGAACATCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCGGGTAAACCCGCT‑CCCGCCGGGCCACGGTGCATGCaaaa                                                                      <  7:219985/149‑1 (MQ=255)                                                                                  gccaggccGGTGACGCAGTCGTACTCGTAATCGCCATCTATGTAGGCGTGGGGTCACCCGCGAACATCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCGGGTAAACCCGCT‑CCCGCCGGGCCACGGTGCATGCAAAAGCcg                                                                  >  5:143746/1‑149 (MQ=255)                                                                                   ccaggccGGTGACGCAGTCGTACTCGTAATCGCCATCTATGTAGGCGTGGGGTCACCCGCGAACATCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCGGGTAAACCCGCT‑CCCGCCGGGCCACGGTGCATGCAAAAGCcgc                                                                 <  5:100268/149‑1 (MQ=255)                                                                                     aggccGGTGACGCAGTCGTACTCGTAATCGCCATCTATGTAGGCGTGGGGTCACCCGCGAACATCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCGGGTAAACCCGCT‑CCCGCCgg                                                                                        <  2:147502/124‑1 (MQ=255)                                                                                     aggccGGTGACGCAGTCGTACTCGTAATCGCCATCTATGTAGGCGTGGGGTCACCCGCGAACATCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCGGGTAAACCCGCT‑CCCGCCgg                                                                                        >  1:147502/1‑124 (MQ=255)                                                                                     aggccGGTGACGCAGTCGTACTCGTAATCGCCATCTATGTAGGCGTGGGGTCACCCGCGAACATCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCGGGTAAACCCGCT‑CCCGCCGGGCCACGGTGCATGCAAAAGCCGCGt                                                               <  5:63309/149‑1 (MQ=255)                                                                                               cGCAGTCGTACTCGTAATCGCCATCTATGTAGGCGTGGGGTCACCCGCGAACATCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCGGGTAAACCCGCT‑CCCGCCGGGCCACGGTGCATGCAAAAGCCGCGTTCCAAc                                                         <  8:20034/145‑1 (MQ=255)                                                                                               cGCAGTCGTACTCGTAATCGCCATCTATGTAGGCGTGGGGTCACCCGCGAACATCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCGGGTAAACCCGCT‑CCCGCCGGGCCACGGTGCATGCAAAAGCCGCGTTCCAAc                                                         >  7:20034/1‑145 (MQ=255)                                                                                                gCAGTCGTACTCGTAATCGCCATCTATGTAGGCGTGGGGTCACCCGCGAACATCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCGGGTATACCCGCT‑CCCGCCGGGCCACGGTGCATGCAAAAGCCGCGTTCCAACGCTAt                                                    <  1:243466/149‑1 (MQ=255)                                                                                                            gTAATCGCCATCTATGTAGGCGTGGGGTCACCCGCGAACATCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCGGGTAAACCCGCT‑CCCGCCGGGCCACGGTGCATGCAAAAGCCGCGTTCCAACGCTATTTTTTGCTGccc                                        >  4:26729/1‑149 (MQ=255)                                                                                                                tCGCCATCTATGTAGGCGTGGGGTCACCCGCGAACATCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCGGGTAAACCCGCT‑CCCGCCGGGCCACGGTGCATGCAAAAGCCGCGTTCCAACGCTATTTTTTGCTGCCCGGTg                                    <  3:26729/149‑1 (MQ=255)                                                                                                                     aTCTATGTAGGCGTGGGGTCACCCGCGAACATCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCGGGTAAACCCGCT‑CCCGCCGGGCCACGGTGCATGCAAAAGCCGCGTTCCAACGCTATTTTTTGCTGCCCGGTGGGTAg                               >  5:231831/1‑149 (MQ=255)                                                                                                                      tCTATGTAGGCGTGGGGTCACCCGCGAACATCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCGGGTAAACCCGCT‑CCCGCCGGGCCACGGTGCATGCAAAAGCCGCGTTCCAACGCTATTTTTTGCTGCCCGGTGGGTAGt                              >  6:283767/1‑149 (MQ=255)                                                                                                                          tGTAGGCGTGGGGTCACCCGCGAACATCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCGGGTAAACCCGCT‑CCCGCCGGGCCACGGTGCATGCAAAAGCCGCGTTCCAACGCTATTTTTTGCTGCCCGGTGGGTAGTTGcc                          <  6:143746/149‑1 (MQ=255)                                                                                                                                         aCCCGCGAACATCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCGGGTAAACCCGCT‑CCCGCCGGGCCACGGTGCATGCAAAAGCCGCGTTCCAACGCTATTTTTTGCTGCCCGGTGGGTAGTTGCCCAGCAcc                   <  2:217606/141‑1 (MQ=255)                                                                                                                                         aCCCGCGAACATCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCGGGTAAACCCGCT‑CCCGCCGGGCCACGGTGCATGCAAAAGCCGCGTTCCAACGCTATTTTTTGCTGCCCGGTGGGTAGTTGCCCAGCAcc                   >  1:217606/1‑141 (MQ=255)                                                                                                                                         aCCCGCGAACATCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCGGGTAAACCCGCT‑CCCGCCGGGCCACGGTGCATGCAAAAGCCGCGTTCCAACGCTATTTTTTGCTGCCCGGTGGGTAGTTGCCCAGCACCTTGGCCAc           <  6:231831/149‑1 (MQ=255)                                                                                                                                         aCCCGCGAACATCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCGGGTAAACCCGCT‑CCCGCCGGGCCACGGTGCATGCAAAAGCCGCGTTCCAACGCTATTTTTTGCTGCCCGGTGGGTAGTTGCCCAGCACCTTGGCCAc           >  8:301250/1‑149 (MQ=255)                                                                                                                                           ccGCGAACATCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCGGGTAAACCCGCT‑CCCGCCGGGCCCCGGTGCATGCAAAAGCCGCGGTCCAACGCTATTTTTTGCTGCCCGGTGGGTAGTTGCCCAGCACCTTGGCCCCgg         >  5:3968/1‑149 (MQ=255)                                                                                                                                                aaCATCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCGGGTAAACCCGCT‑CCCGCCGGGCCACGGTGCATGCAAAAGCCGCGTTCCAACGCTATTTTTTGCTGCGCGGTGGGTAGTTGCCCAGCCCCTTGGCCACGGTATTg    >  8:293542/1‑149 (MQ=255)                                                                                                                                                   aTCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCGGGTAAATCCGCT‑CCCGCCGGGCCACGGTGCATGCAAAAGCCGCGTTCCAACGCTATTTTTTGCTGCCCGGTGGGTAGTTGCCCAGCACCTTGGCCACGGTATTGCg  >  4:123932/1‑148 (MQ=255)                                                                                                                                                     |                                                                                                                                                   ATAGACGGGAACGTGCGGGGGAGTGCGGTTGGCATCGGAAAAAAGGCGTGCGTGGAATGGATTTTGTCGTAGCTGACACAGGCCAGGCCGGTGACGCAGTCGTACTCGTAATCGCCATCTATGTAGGCGTGGGGTCACCCGCGAACATCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCGGGTAAACCCGCT‑CCCGCCGGGCCACGGTGCATGCAAAAGCCGCGTTCCAACGCTATTTTTTGCTGCCCGGTGGGTAGTTGCCCAGCACCTTGGCCACGGTATTGCG  >  NC_002947/674174‑674467

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.