New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	674322 =	42 (0.810)	3 (0.060)	3/248	NT	7.6%	intergenic (‑214/+92)	PP_0575/PP_0576	membrane protein/lipoprotein
	?	NC_002947	674363 =	34 (0.700)					intergenic (‑255/+51)	PP_0575/PP_0576	membrane protein/lipoprotein

AAAGGCGTGCGTGGAATGGATTTTGTCGTAGCTGACACAGGCCAGGCCGGTGACGCAGTCGTACTCGTAATCGCCATCTATGTAGGCGTGGGGTCACCCGCGAACATCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCGGGTAAACCCGCT‑CCCGCCGGGCCACGGTGCATGCAAAAGCCGCGTTCCAACGCTATTTTTTGCTGCCCGGTGGGTAGTTGCCCAGCACCTTGGCCACGGTATTGCGGATTGCGCTGTTGCGTTCTTCCGGGCTTGGCGGGTAGTTGTTCA  >  NC_002947/674215‑674511                                                                                                                                                     |                                                                                                                                                      tccgcaataccgtggccaaggtgctgggcaactacccaccgggcagcaaaaaatagcgttggaacgcggcttttgcatgcaccgtggcccggcgggagcgggtttacCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCggg                                                                                                                                                       <  3:47664‑M1/42‑1 (MQ=255)  aaGGCGTGCGTGGAATGGATTTTGTCGTAGCTGACACAGGCCAGGCCGGTGACGCAGTCGTACTCGTAATCGCCATCTATGTAGGCGTGGGGTCACCCGCGAACATCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCggg                                                                                                                                                       >  2:243466/1‑148 (MQ=255)           gtgGAATGGATTTTGTCGTAGCTGACACAGGCCAGGCCGGTGACGCAGTCGTACTCGTAATCGCCATCTATGTAGGCGTGGGGTCACCCGCGAACATCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCGGGTAAACCCGCt                                                                                                                                             <  2:141523/149‑1 (MQ=255)           gtgGAATGGATTTTGTCGTAGCTGACACAGGCCAGGCCGGTGACGCAGTCGTACTCGTAATCGCCATCTATGTAGGCGTGGGGTCACCCGCGAACATCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCGGGTAAACCCGCt                                                                                                                                             >  1:8765/1‑149 (MQ=255)           cgtggccaaggtgctgggcaactacccaccgggcagcaaaaaatagcgttggaacgcggcttttgcatgcaccgtggcccggcgggagcgggtttacCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCGGGTAAACCCGCt                                                                                                                                             >  4:47664‑M1/98‑149 (MQ=255)              gAATGGATTTTGTCGTAGCTGACACAGGCCAGGCCGGTGACGCAGTCGTACTCGTAATCGCCATCTATGTAGGCGTGGGGTCACCCGCGAACATCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCGGGTAAACCCGCT‑cc                                                                                                                                          <  7:287579/148‑1 (MQ=255)                 tGGATTTTGTCGTAGCTGACACAGGCCAGGCCGGTGACGCAGTCGTACTCGTAATCGCCATCTATGTAGGCGTGGGGTCACCCGCGAACATCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCGGGTAAACCCGCT‑Cccgcc                                                                                                                                      >  8:219985/1‑149 (MQ=255)                   gATTTTGTCGTAGCTGACACAGGCCAGGCCGGTGACGCAGTCGTACTCGTAATCGCCATCTATGTAGGCGTGGGGTCACCCGCGAACATCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCGGGTAAACCCGCT‑CCCGCCgg                                                                                                                                    <  5:107230/149‑1 (MQ=255)                      tttGTCGTAGCTGACACAGGCCAGGCCGGTGACGCAGTCGTACTCGTAATCGCCATCTATGTAGGCGTGGGGTCACCCGCGAACATCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCGGGTAAGCCCGCT‑Cccgcggacc                                                                                                                                  >  1:113409/1‑143 (MQ=255)                          tCGTAGCTGACACAGGCCAGGCCGGTGACGCAGTCGTACTCGTAATCGCCATCTATGTAGGCGTGGGGTCACCCGCGAACATCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCGGGTAAACCCGCT‑CCCGCCGGGCCACg                                                                                                                              <  2:8765/148‑1 (MQ=255)                            gTAGCTGACACAGGCCAGGCCGGTGACGCAGTCGTACTCGTAATCGCCATCTATGTAGGCGTGGGGTCACCCGCGAACATCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCGGGTAAACCCGCT‑CCCGCCGGGCCACGGt                                                                                                                            <  5:304948/148‑1 (MQ=255)                               gCTGACACAGGCCAGGCCGGTGACGCAGTCGTACTCGTAATCGCCATCTATGTAGGCGTGGGGTCACCCGCGAACATCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCGGGTAAACCCGCT‑CCCGCCGGGCCACGGtgcat                                                                                                                        >  6:100268/1‑149 (MQ=255)                                 tGACACAGGCCAGGCCGGTGACGCAGTCGTACTCGTAATCGCCATCTATGTAGGCGTGGGGTCACCCGCGAACATCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCGGGTAAACCCGCT‑CCCGCCGGGCCACGGtgcatg                                                                                                                       >  4:88743/1‑148 (MQ=255)                                    cacaGGCCAGGCCGGTGACGCAGTCGTACTCGTAATCGCCATCTATGTAGGCGTGGGGTCACCCGCGAACATCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCGGGTAAACCCGCTCCCCGCCGGGCCACGGTGCATGCaa                                                                                                                    <  7:200783/149‑1 (MQ=255)                                     acaGGCCAGGCCGGTGACGCAGTCGTACTCGTAATCGCCATCTATGTAGGCGTGGGGTCACCCGCGAACATCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCGGGTAAACCCGCT‑CCCGCCGGGCCACGGTGCATGCaaaa                                                                                                                  <  7:219985/149‑1 (MQ=255)                                         gccaggccGGTGACGCAGTCGTACTCGTAATCGCCATCTATGTAGGCGTGGGGTCACCCGCGAACATCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCGGGTAAACCCGCT‑CCCGCCGGGCCACGGTGCATGCAAAAGCcg                                                                                                              >  5:143746/1‑149 (MQ=255)                                          ccaggccGGTGACGCAGTCGTACTCGTAATCGCCATCTATGTAGGCGTGGGGTCACCCGCGAACATCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCGGGTAAACCCGCT‑CCCGCCGGGCCACGGTGCATGCAAAAGCcgc                                                                                                             <  5:100268/149‑1 (MQ=255)                                            aggccGGTGACGCAGTCGTACTCGTAATCGCCATCTATGTAGGCGTGGGGTCACCCGCGAACATCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCGGGTAAACCCGCT‑CCCGCCgg                                                                                                                                    <  2:147502/124‑1 (MQ=255)                                            aggccGGTGACGCAGTCGTACTCGTAATCGCCATCTATGTAGGCGTGGGGTCACCCGCGAACATCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCGGGTAAACCCGCT‑CCCGCCgg                                                                                                                                    >  1:147502/1‑124 (MQ=255)                                            aggccGGTGACGCAGTCGTACTCGTAATCGCCATCTATGTAGGCGTGGGGTCACCCGCGAACATCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCGGGTAAACCCGCT‑CCCGCCGGGCCACGGTGCATGCAAAAGCCGCGt                                                                                                           <  5:63309/149‑1 (MQ=255)                                                      cGCAGTCGTACTCGTAATCGCCATCTATGTAGGCGTGGGGTCACCCGCGAACATCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCGGGTAAACCCGCT‑CCCGCCGGGCCACGGTGCATGCAAAAGCCGCGTTCCAAc                                                                                                     <  8:20034/145‑1 (MQ=255)                                                      cGCAGTCGTACTCGTAATCGCCATCTATGTAGGCGTGGGGTCACCCGCGAACATCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCGGGTAAACCCGCT‑CCCGCCGGGCCACGGTGCATGCAAAAGCCGCGTTCCAAc                                                                                                     >  7:20034/1‑145 (MQ=255)                                                       gCAGTCGTACTCGTAATCGCCATCTATGTAGGCGTGGGGTCACCCGCGAACATCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCGGGTATACCCGCT‑CCCGCCGGGCCACGGTGCATGCAAAAGCCGCGTTCCAACGCTAt                                                                                                <  1:243466/149‑1 (MQ=255)                                                                   gTAATCGCCATCTATGTAGGCGTGGGGTCACCCGCGAACATCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCGGGTAAACCCGCT‑CCCGCCGGGCCACGGTGCATGCAAAAGCCGCGTTCCAACGCTATTTTTTGCTGccc                                                                                    >  4:26729/1‑149 (MQ=255)                                                                       tCGCCATCTATGTAGGCGTGGGGTCACCCGCGAACATCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCGGGTAAACCCGCT‑CCCGCCGGGCCACGGTGCATGCAAAAGCCGCGTTCCAACGCTATTTTTTGCTGCCCGGTg                                                                                <  3:26729/149‑1 (MQ=255)                                                                            aTCTATGTAGGCGTGGGGTCACCCGCGAACATCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCGGGTAAACCCGCT‑CCCGCCGGGCCACGGTGCATGCAAAAGCCGCGTTCCAACGCTATTTTTTGCTGCCCGGTGGGTAg                                                                           >  5:231831/1‑149 (MQ=255)                                                                             tCTATGTAGGCGTGGGGTCACCCGCGAACATCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCGGGTAAACCCGCT‑CCCGCCGGGCCACGGTGCATGCAAAAGCCGCGTTCCAACGCTATTTTTTGCTGCCCGGTGGGTAGt                                                                          >  6:283767/1‑149 (MQ=255)                                                                                 tGTAGGCGTGGGGTCACCCGCGAACATCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCGGGTAAACCCGCT‑CCCGCCGGGCCACGGTGCATGCAAAAGCCGCGTTCCAACGCTATTTTTTGCTGCCCGGTGGGTAGTTGcc                                                                      <  6:143746/149‑1 (MQ=255)                                                                                                aCCCGCGAACATCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCGGGTAAACCCGCT‑CCCGCCGGGCCACGGTGCATGCAAAAGCCGCGTTCCAACGCTATTTTTTGCTGCCCGGTGGGTAGTTGCCCAGCAcc                                                               <  2:217606/141‑1 (MQ=255)                                                                                                aCCCGCGAACATCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCGGGTAAACCCGCT‑CCCGCCGGGCCACGGTGCATGCAAAAGCCGCGTTCCAACGCTATTTTTTGCTGCCCGGTGGGTAGTTGCCCAGCAcc                                                               >  1:217606/1‑141 (MQ=255)                                                                                                aCCCGCGAACATCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCGGGTAAACCCGCT‑CCCGCCGGGCCACGGTGCATGCAAAAGCCGCGTTCCAACGCTATTTTTTGCTGCCCGGTGGGTAGTTGCCCAGCACCTTGGCCAc                                                       <  6:231831/149‑1 (MQ=255)                                                                                                aCCCGCGAACATCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCGGGTAAACCCGCT‑CCCGCCGGGCCACGGTGCATGCAAAAGCCGCGTTCCAACGCTATTTTTTGCTGCCCGGTGGGTAGTTGCCCAGCACCTTGGCCAc                                                       >  8:301250/1‑149 (MQ=255)                                                                                                 agcgggtttacccgcgaagcaattggcccggtgcatggcaccggcttcgcggGTAAACCCGCT‑CCCGCCGGGCCACGGTGCATGCAAAAGCCGCGTTCCAACGCTATTTTTTGCTGCCCGGTGGGTAGTTGCCCAGCACCTTGGCCACg                                                      >  4:47664‑M2/53‑149 (MQ=255)                                                                                                  ccGCGAACATCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCGGGTAAACCCGCT‑CCCGCCGGGCCCCGGTGCATGCAAAAGCCGCGGTCCAACGCTATTTTTTGCTGCCCGGTGGGTAGTTGCCCAGCACCTTGGCCCCgg                                                     >  5:3968/1‑149 (MQ=255)                                                                                                       aaCATCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCGGGTAAACCCGCT‑CCCGCCGGGCCACGGTGCATGCAAAAGCCGCGTTCCAACGCTATTTTTTGCTGCGCGGTGGGTAGTTGCCCAGCCCCTTGGCCACGGTATTg                                                >  8:293542/1‑149 (MQ=255)                                                                                                          aTCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCGGGTAAATCCGCT‑CCCGCCGGGCCACGGTGCATGCAAAAGCCGCGTTCCAACGCTATTTTTTGCTGCCCGGTGGGTAGTTGCCCAGCACCTTGGCCACGGTATTGCg                                              >  4:123932/1‑148 (MQ=255)                                                                                                           cccgcgaagcaattggcccggtgcatggcaccggcttcgcggGTAAACCCGCT‑CCCGCCGGGCCACGGTGCATGCAAAAGCCGCGTTCCAACGCTATTTTTTGCTGCCCGGTGGGTAGTTGCCCAGCACCTTGGCCACGGTATTGCGGa                                            <  3:47664‑M2/107‑1 (MQ=255)                                                                                                            ccgcgaagcaattggcccggtgcatggcaccggcttcgcggGTAAACCCGCT‑CCCGCCGGGCCACGGTGCATGCAAAAGCCGCGTTCCAACGCTATTTTTTGCTGCCCGGTGGGTAGTTGCCCAGCACCTTGGCCACGGTATTGCGGAt                                           >  1:250385‑M2/42‑149 (MQ=255)                                                                                                                  gcCCGGTGCATGGCACCGGGCCAATTGCTTCGCGGGTAAACCCGCT‑CCCGCCGGGCCACGGTGCATGCAAAAGCCGCGTTCCAACGCTATTTTTTGCTGCCCGGTGGGTAGTTGCCCAGCACCTTGGCCACg                                                      <  1:122476‑M1/130‑1 (MQ=255)                                                                                                                  gcCCGGTGCATGGCACCGGGCCAATTGCTTCGCGGGTAAACCCGCT‑CCCGCCGGGCCACGGTGCATGCAAAAGCCGCGTTCCAACGCTATTTTTTGCTGCCCGGTGGGTAGTTGCCCAGCACCTTGGCCACg                                                      >  2:122476‑M1/3‑132 (MQ=255)                                                                                                                   GCCGGTGCCATGCACCGGGCCAATTGCTTCGCGGGTAAACCCGCT‑CCCGCCGGGCCACGGTGCATGCAAAAGCCGCGTTCCAACGCTATTTTTTGCTGCCCGGTGGGTAGTTGCCCAGCACCTTGGCCACGGTATTGCGGATTGCGCTg                                    <  1:294797‑M1/149‑1 (MQ=255)                                                                                                                            aTGCACCGGGCCAATTGCTTCGCGGGTAAACCCGCT‑CCCGCCGGGCCACGGTGCATGCAAAAGCCGCGTTCCACCGCTATTTTTTGCTGCCCGGTGGGTAGTTGCCCAGCACCTTGGCCACGGTATTGCGGATTGCGCTGTTGCGttct                           >  5:229817/1‑149 (MQ=255)                                                                                                                                   gggCCAATTGCTTCGCGGGTAAACCCGCT‑CCCGCCGGGCCACGGTGCATGCAAAAGCCGCGTTCCAACGCTATTTTTTGCTGCCCGGTGGGTAGTTGCCCAGCACCTTGGCCACGGTATTGCGGATTGCGCTGTTGCGTTCTTCCGGGc                    >  6:14032/1‑149 (MQ=255)                                                                                                                                       cAATTGCTTCGCGGGTAAACCCGCT‑CCCGCCGGGCCACGGTGCATGCAAAAGCCGCGTTCCAACGCTATTTTTTGCTGCCCGGTGGGTAGTTGCCCAGCACCTTGGCCACGGTATTGCGGATTGCGCTGTTGCGTTCTTCCGGGCTTgg                >  3:34569/1‑149 (MQ=255)                                                                                                                                         aTTGCTTCGCGGGTAAACCCGCT‑CCCGCCGGGCCACGGTGCATGCAAAAGCCGCGTTCCAACGCTATTTTTTGCTGCCCGGTGGGTAGTTGCCCAGCACCTTGGCCACGGTATTGCGGATTGCGCTGTTGCGTTCTTCCGGGCTTGGCg              >  6:123919/1‑149 (MQ=255)                                                                                                                                          ttGCTTCGCGGGTAAACCCGCT‑CCCGCCGGGCCACGGTGCATGCAAAAGCCGCGTTCCAACGCTATTTTTTGCTGCCCGGTGGGTAGTTGCCCAGCACCTTGGCCACGGTATTGCGGATTGCGCTGTTGCGTTCTTCCGGGCTTGGCgg             <  3:88743/149‑1 (MQ=255)                                                                                                                                            gcttcgcggGTAAACCCGCT‑CCCGCCGGGCCACGGTGCATGCAAAAGCCGCGTTCCAACGCTATTTTTTGCTGCCCGGTGGGTAGTTGCCCAGCACCTTGGCCACGGTATTGCGGATTGCGCTGTTGCGTTCTTCCGGGCTTGGCggg            <  5:283767‑M2/139‑1 (MQ=255)                                                                                                                                             cttcgcggGTAAACCCGCT‑CCCGCCGGGCCACGGTGCATGCAAAAGCCGCGTTCCAACGCTATTTTTTGCTGCCCGGTGGGTAGTTGCCCAGCACCTTGGCCACGGTATTGCGGATTGCGCTGTTGCGTTCTTCCGGGCTTGGCggg            >  1:71261‑M2/9‑147 (MQ=255)                                                                                                                                             cttcgcggGTAAACCCGCT‑CCCGCCGGGCCACGGTGCATGCAAAAGCCGCGTTCCAACGCTATTTTTTGCTGCCCGGTGGGTAGTTGCCCAGCACCTTGGCCACGGTATTGCGGATTGCGCTGTTGCGTTCTTCCGGGCTTGGCGGGTa          <  4:34569‑M2/141‑1 (MQ=255)                                                                                                                                                cgcggGTAAACCCGCT‑CCCGCCGGGCCACGGTGCATGCAAAAGCCGCGTTCCAACGCTATTTTTTGCTGCCCGGTGGGTAGTTGCCCAGCACCTTGGCCACGGTATTGCGGATTGCGCTGTTGCGTTCTTCCGGGCTTGGCGGGTAgtt       >  4:173970‑M2/6‑149 (MQ=255)                                                                                                                                                   ggGTAAACCCGCT‑CCCGCCGGGCCACGGTGCATGCAAAAGCCGCGTTCCAACGCTATTTTTTGCTGCCCGGTGGGTAGTTGCCCAGCACCTTGGCCACGGTATTGCGGATTGCGCTTTTGCGTTCTTCCGGGCTTGGCGGGTAg         <  5:329114‑M2/142‑1 (MQ=255)                                                                                                                                                   ggGTAAACCCGCT‑CCCGCCGGGCCACGGTGCATGCAAAAGCCGCGTTCCAACGCTATTTTTTGCTGCCCGGTGGGTAGTTGCCCAGCACCTTGGCCACGGTATTGCGGATTGCGCTGTTGCGTTCTTCCGGGCTTGGCGGGTAg         >  6:329114‑M2/3‑144 (MQ=255)                                                                                                                                                    gGTAAACCCGCT‑CCCGCCGGGCCACGGTGCATGCAAAAGCCGCGTTCCAACGCTATTTTTTGCTGCCCGGTGGGTAGTTGCCCAGCACCTTGGCCACGGTATTGCGGATTGCGCTGTTGCGTTCTTCCGGGCTTGGCGGGTAGTTGTTc   <  2:294797‑M2/148‑1 (MQ=255)                                                                                                                                                     gTAAACCCGCT‑CCCGCCGGGCCACGGTGCATGCAAAAGCCGCGTTCCAACGCTATTTTTTGCTGCCCGGTGGGTAGTTGCCCAGCACCTTGGCCACGGTATTGCGGATTGCGCTGTTGCGTTCTTCCGGGCTTGGCGGGTAGTTGTTCa  >  5:31277/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                      AAAGGCGTGCGTGGAATGGATTTTGTCGTAGCTGACACAGGCCAGGCCGGTGACGCAGTCGTACTCGTAATCGCCATCTATGTAGGCGTGGGGTCACCCGCGAACATCCGCGAAGCCGGTGCCATGCACCGGGCCAATTGCTTCGCGGGTAAACCCGCT‑CCCGCCGGGCCACGGTGCATGCAAAAGCCGCGTTCCAACGCTATTTTTTGCTGCCCGGTGGGTAGTTGCCCAGCACCTTGGCCACGGTATTGCGGATTGCGCTGTTGCGTTCTTCCGGGCTTGGCGGGTAGTTGTTCA  >  NC_002947/674215‑674511

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.