New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	724297 =	51 (0.980)	3 (0.060)	3/260	NT	5.6%	coding (334/861 nt)	PP_0618	branched‑chain amino acid ABC transporter permease
	?	NC_002947	724330 =	52 (1.020)					coding (301/861 nt)	PP_0618	branched‑chain amino acid ABC transporter permease

TCCAGCAGCAGCCACAGGCCAATACCGATCAGCGCTGCGAAGCCGATCAGGAACAAGCGGTAGTAGGGGTAGATGAAGTCGCCGAGTATCAGCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAGGCGCTCGACCGCCCAGGCCAGCGCGGCCACCACCAGTGGCGCAATCAGCAGCGCCAGC  >  NC_002947/724149‑724445                                                                                                                                                     |                                                                                                                                                     tacaccgccgtggccgtcaccggcaacttctggctggcgctgctgattgcgccactggtggtggccgcgctggcctgggcggtcgagcgcctgttgatcaaacgcatctaccacctgccgcacaccttccagatcctcgtcaccctcgg                                                                                                                                                      <  4:184841‑M1/1‑1 (MQ=255) tacaccgccgtggccgtcaccggcaacttctggctggcgctgctgattgcgccactggtggtggccgcgctggcctgggcggtcgagcgcctgttgatcaaacgcatctaccacctgccgcacaccttccagatcctcgtcaccctcgg                                                                                                                                                      <  2:207104‑M1/1‑1 (MQ=255)    agcagcagcCACAGGCCAATACCGATCAGCGCTGCGAAGCCGATCAGGAACAAGCGGTAGTAGGGGTAGATGAAGTCGCCGAGTATCAGCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCAc                                                                                                                                                   <  4:24800/149‑1 (MQ=255)      cagcagcCACAGGCCAATACCGATCAGCGCTGCGAAGCCGATCAGGAACAAGCGGTAGTAGGGGTAGATGAAGTCGCCGAGTATCAGCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCg                                                                                                                                                 <  5:237312/149‑1 (MQ=255)            ccACAGGCCAATACCGATCAGCGCTGCGAAGCCGATCAGGAACAAGCGGTAGTAGGGGTAGATGAAGTCGCCGAGTATCAGCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCtt                                                                                                                                           >  2:297816/1‑149 (MQ=255)             cacaGGCCAATACCGATCAGCGCTGCGAAGCCGATCAGGAACAAGCGGTAGTAGGGGTAGATGAAGTCGCCGAGTATCAGCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTc                                                                                                                                          >  1:122836/1‑149 (MQ=255)             cacaGGCCAATACCGATCAGCGCTGCGAAGCCGATCAGGAACAAGCGGTAGTAGGGGTAGATGAAGTCGCCGAGTATCAGCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTc                                                                                                                                          >  3:221418/1‑149 (MQ=255)                     aaTACCGATCAGCGCTGCGAAGCCGATCAGGAACAAGCGGTAGTAGGGGTAGATGAAGTCGCCGAGTATCAGCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGgatga                                                                                                                                  >  6:62608/1‑149 (MQ=255)                         ccGATCAGCGCTGCGAAGCCGATCAGGAACAAGCGGTAGTAGGGGTAGATGAAGTCGCCGAGTATCAGCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCa                                                                                                                               <  7:260261/148‑1 (MQ=255)                          cGATCAGCGCTGCGAAGCCGATCAGGAACATGCGGTAGTAGGGGTAGATGAAGTCGCCGAGTATCAGCACCCCGCGGAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAgc                                                                                                                             <  2:142157/149‑1 (MQ=255)                          cGATCAGCGCTGCGAAGCCGATCAGGAACAAGCGGTAGTAGGGGTAGATGAAGTCGCCGAGTATCAGCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCGCACCGGGCCCCAGATAAGCACCGACGCTTCGTGGATGATCAgc                                                                                                                             >  2:126932/1‑149 (MQ=255)                          cGATCAGCGCTGCGAAGCCGATCAGGAACAAGCGGTAGTAGGGGTAGATGAAGTCGCCGAGTATCAGCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAgc                                                                                                                             >  5:185634/1‑149 (MQ=255)                          cGATCAGCGCTGCGAAGCCGATCAGGAACAAGCGGTAGTAGGGGGAGATGAAGTCGCCGAGTATCAGCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAgc                                                                                                                             <  8:147587/149‑1 (MQ=255)                                      cgctgctgattgcgccactggtggtggccgcgctggcctgggcggtcgagcgcctgttgatcaaacgcatctaccacctgccgcacaccttccagatcctcgtcaccctcgGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAgg                                                                                                                 >  6:95516‑M1/112‑149 (MQ=255)                                      cGAAGCCGATCAGGAACAAGCGGTAGTAGGGGTAGATGAAGTCGCCGAGTATCAGCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGa                                                                                                                   <  8:243024/147‑1 (MQ=255)                                      cGAAGCCGATCAGGAACAAGCGGTAGTAGGGGTAGATGAAGTCGCCGAGTATCAGCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAgg                                                                                                                 <  5:62608/149‑1 (MQ=255)                                       gAAGCCGATCAGGAACAAGCGGTAGTAGGGGTAGATGAAGTCGCCGAGTATCAGCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAggg                                                                                                                >  8:80494/1‑149 (MQ=255)                                          gCCGATCAGGAACAAGCGGTAGTAGGGGTAGATGAAGTCGCCGAGTATCAGCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGa                                                                                                             <  2:122836/149‑1 (MQ=255)                                             gATCAGGAACAAGCGGTAGTAGGGGTAGATGAAGTCGCCGAGTATCAGCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGAc                                                                                                            >  3:253277/1‑147 (MQ=255)                                             gATCAGGAACAAGCGGTAGTAGGGGTAGATGAAGTCGCCGAGTATCAGCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGAc                                                                                                            >  1:99299/1‑147 (MQ=255)                                                   gAACAAGCGGTAGTAGGGGTAGATGAAGTCGCCGAGTATCAGCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCt                                                                                                    >  5:54143/1‑149 (MQ=255)                                                      actggtggtggccgcgctggcctgggcggtcgagcgcctgttgatcaaacgcatctaccacctgccgcacaccttccagatcctcgtcaccctcgGCACCGACGCTTCCTGGATGATCAGCGCAATGCCGAg                                                                                                                  <  3:219598‑M1/37‑1 (MQ=255)                                                      actggtggtggccgcgctggcctgggcggtcgagcgcctgttgatcaaacgcatctaccacctgccgcacaccttccagatcctcgtcaccctcgGCACCGACGCTTCCTGGATGATCAGCGCAATGCCGAg                                                                                                                  >  4:219598‑M1/96‑132 (MQ=255)                                                          cGGTAGTAGGGGTAGATGAAGTCGCCGAGTATCAGCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGgt                                                                                             <  1:126932/149‑1 (MQ=255)                                                                 agGGGTAGATGAAGTCGCCGAGTATCAGCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGACGAGGGTGACGAAGATCAGGAAGGTGTGCgg                                                                                       >  5:305568/1‑148 (MQ=255)                                                                  ggggTAGATGAAGTCGCCGAGTATCAGCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCgg                                                                                       >  1:207104/1‑147 (MQ=255)                                                                        gATGAAGTCGCCGAGTATCAGCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAgcgc                                                                                                                           <  8:32471/105‑1 (MQ=255)                                                                        gATGAAGTCGCCGAGTATCAGCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAgcgc                                                                                                                           >  7:32471/1‑105 (MQ=255)                                                                        gATGAAGTCGCCGAGTATCAGCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAggtggt                                                                               <  2:99299/149‑1 (MQ=255)                                                                                 gCCGAGTATCAGCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCg                                                                        >  4:141450/1‑147 (MQ=255)                                                                                 gCCGAGTATCAGCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCg                                                                        <  3:141450/147‑1 (MQ=255)                                                                                 gCCGAGTATCAGCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGtt                                                                      >  2:83415/1‑149 (MQ=255)                                                                                  ccGAGTATCAGCACCCCGCGCAGTTCGTGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCTGATGAGCTCCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGttt                                                                     <  7:80494/149‑1 (MQ=255)                                                                                    gAGTATCAGCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGa                                                                   <  6:245153/149‑1 (MQ=255)                                                                                    atggttCAGCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAACACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGa                                                                   <  8:292066/144‑1 (MQ=255)                                                                                       tATCAGCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATc                                                                 >  4:92050/1‑148 (MQ=255)                                                                                         tCAGCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCaa                                                               <  4:221418/148‑1 (MQ=255)                                                                                           aGCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAg                                                            <  6:54143/149‑1 (MQ=255)                                                                                               ccccGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGACGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAGgcgc                                                        >  7:172752/1‑149 (MQ=255)                                                                                                cccGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAGgc                                                          >  6:288407/1‑146 (MQ=255)                                                                                                cccGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAGgc                                                          <  5:288407/146‑1 (MQ=255)                                                                                                 ccGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTc                                                                                                                                          <  8:24119/65‑1 (MQ=255)                                                                                                 ccGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTc                                                                                                                                          >  7:24119/1‑65 (MQ=255)                                                                                                        gTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAGGCGCTCGACCGcc                                               >  3:275399/1‑149 (MQ=255)                                                                                                              gTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAGGCGCTCGACCGCCCAGGc                                          >  5:46363/1‑148 (MQ=255)                                                                                                                   aCGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAGGCGCTCGACCGCCCAGGCCAgcgc                                    >  8:199042/1‑149 (MQ=255)                                                                                                                        aaTGTTTTTGTCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAGGCGCTCGACCGCCCAGGCCAGCGCGGcca                               >  5:258668/1‑149 (MQ=255)                                                                                                                        aaTGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAGGCGCTCGACCGCCCAGGCCAGCGCGGcca                               >  6:84633/1‑149 (MQ=255)                                                                                                                        aaTGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAGGCGCTCGACCGCCCAGGCCAGCGCGGcca                               >  1:240406/1‑149 (MQ=255)                                                                                                                          tGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAGGCGCTCGACCGCCCAGGCCAGCGCGGccac                              >  6:104547/1‑148 (MQ=255)                                                                                                                                   ccACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAGGCGCTCGACCGCCCAGGCCAGCGCGGCCACCACCAGTGgc                    <  7:225382/149‑1 (MQ=255)                                                                                                                                   ccACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAGGCGCTCGACCGCCCAGGCCAGCGCGGCCACCACCAGTGgc                    <  8:172752/149‑1 (MQ=255)                                                                                                                                    cACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAGGCGCTCGACCGCCCAGGCCAGCGCGGCCACCACCAGTGgcg                   >  6:53262/1‑149 (MQ=255)                                                                                                                                     aCCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAGGCGCTCGACCGCCCAGGCCAGCGCGGCCACCACCAGTGgcg                   >  2:132180/1‑148 (MQ=255)                                                                                                                                            cccAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAGGCGCTCGACCGCCCAGGCCAGCGCGGCCACCACCAGTGGCGCAATcagc           <  4:275399/149‑1 (MQ=255)                                                                                                                                            cccAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAGGCGCTCGACCGCCCAGGCCAGCGCGGCCACCACCAGTGGCGCAATcag            >  2:68170/1‑148 (MQ=255)                                                                                                                                              cAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAGGCGCTCGACCGCCCAGGCCAGCGCGGCCACCACCAGTGGCGCAATcagcag         >  1:326212/1‑149 (MQ=255)                                                                                                                                                    aGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAGGCGCTCGACCGCCCAGGCCAGCGCGGCCACCACCAGTGGCGCAATCAGCAGCgcca    <  4:253277/148‑1 (MQ=255)                                                                                                                                                     GCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAGGCGCTCGACCGCCCAGGCCAGCGCGGCCACCACCAGTGGCGCAATCAGCAGCgccagc  <  3:311389‑M1/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     TCCAGCAGCAGCCACAGGCCAATACCGATCAGCGCTGCGAAGCCGATCAGGAACAAGCGGTAGTAGGGGTAGATGAAGTCGCCGAGTATCAGCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAGGCGCTCGACCGCCCAGGCCAGCGCGGCCACCACCAGTGGCGCAATCAGCAGCGCCAGC  >  NC_002947/724149‑724445

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.