New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	853271 =	42 (0.810)	3 (0.060)	3/252	NT	7.0%	coding (776/1083 nt)	prfA	peptide chain release factor 1
	?	NC_002947	853322 =	40 (0.810)					coding (827/1083 nt)	prfA	peptide chain release factor 1

CCGGACGAGCAGGCCGCCATCGAAATCAACCCGGCCGACTTGCGCGTGGATACCTACCGTGCCTCCGGTGCCGGCGGCCAGCACGTCAACAAGACCGATTCGGCGATCCGTATCACTCACTTGCCCACCGGTATCGTGGTCGAATGCCAGGAGGAGCGCTCGCAGCACAAGAACCGTGCTCGCGCCATGTCCTGGCTGTCGGCCAAGCTGAACGACATGCAGACCAGTGCCGCGCAGAACGCCCTTGCCAGTGAGCGCAAGCTGCTGGTGGGTTCCGGTGACCGCTCCGAGCG  >  NC_002947/853126‑853418                                                                                                                                                  |                                                                                                                                                    ccGGACGAGCAGGCCGCCATCGAAATCAACCCGGCCGACTTGCGCGTGGATACCTACCGTGCCTCCGGTGCCGGCGGCCAGCACGTCAACAAGACCGATTCGGCGATCCGTATCACTCACTTGCCCACCGGTATCGTGGTCGAATGCCa                                                                                                                                                  <  2:54344/149‑1 (MQ=255)    cggtgatcggtcacccgcccctgtggataattgtaggtgcggatgcgctcggagcggtcaccggaacccaccagcagcttgcgctcactggcaagggcgttctgcgcggcactggtctgcatgtcgttcagcttggccgacaGCCagga                                                                                                                                               >  3:52516‑M1/143‑149 (MQ=255)               agccATCGAAATCAACCCGGCCGACTTGCGCGTGGATACCTACCGTGCCTCCGGTGCCGGCGGCCAGCACGTCAACAAGACCGATTCGGCGATCCGTATCACTCACTTGCCCACCGGTATCGTGGTCGAATGCCAGGAGGAGCGCTCgc                                                                                                                                    <  5:231908/148‑1 (MQ=255)                   aTCGAAATCAACCCGGCCGACTTGCGCGTGGATACATACAGTGCCTCCGGTGCCGGCGGCCAGCACGTCAACAAGACCGATTCGGCGATCCGTATCACTCACTTGCCCACCGGTATCGTGGTCGAATGCCAGGAGGAGCGCTCgcagca                                                                                                                                >  6:242050/1‑149 (MQ=255)                    tCGAAATCAACCCGGCCGACTTGCGCGTGGATACCTACCGTGCCTCCGGTGCCGGCGGCCAGCACGTCAACAAGACCGATTCGGCGATCCGTATCACTCACTTGCCCACCGGTATCGTGGTCGAATGCCAGGAGGAGCGCTc                                                                                                                                      <  7:240963/142‑1 (MQ=255)                       aaaTCAACCCGGCCGACTTGCGCGTGGATACCTACCGTGCCTCCGGTGCCGGCGGCCAGCACGTCAACAAGACCGATTCGGCGATCCGTATCACTCACTTGCCCACCGGTATCGTGGTCGAATGCCAGGAGGAGCGCTCGCAGcac                                                                                                                               >  2:108856/1‑146 (MQ=255)                         aTCAACCCGGCCGACTTGCGCGTGGATACCTACCGTGCCTCCGGTGCCGGCGGCCAGCACGTCAACAAGACCGATTCGGCGATCCGTATCACTCACTTGCCCACCGGTATCGTGGTCGAATGCCAGGAGGAGCGCTCgc                                                                                                                                    <  1:74144/139‑1 (MQ=255)                         aTCAACCCGGCCGACTTGCGCGTGGATACCTACCGTGCCTCCGGTGCCGGCGGCCAGCACGTCAACAAGACCGATTCGGCGATCCGTATCACTCACTTGCCCACCGGTATCGTGGTCGAATGCCAGGAGGAGCGCTCgc                                                                                                                                    >  2:74144/1‑139 (MQ=255)                          tCAACCCGGCCGACTTGCGCGTGGATACCTACCGTGCCTCCGGTGCCGGCGGCCAGCACGTCAACAAGACCGATTCGGCGATCCGTATCACTCACTTGCCCACCGGTATCGTGGTCGAATGCCAGGAGGAGCGCTCGCAGCACAAGAAc                                                                                                                         >  7:226903/1‑149 (MQ=255)                                       cTTGCGCGTGGATACCTACCGTGCCTCCGGTGCCGGCGGCCAGCACGTCAACAAGACCGATTCGGCGATCCGTATCACTCACTTGCCCACCGGTATCGTGGTCGAATGCCAGCAGGAGCGCTCGCAGCACAAGAACCGTGCTCGCGCCa                                                                                                            >  3:313078/1‑149 (MQ=255)                                        ttGCGCGTGGATACCTACCGTGCCTCCGGTGCCGGCGGCCAGCACGTCAACAAGACCGATTCGGCGATCCGTATCACTCACTTGCCCACCGGTATCGTGGTCGAATGCCAGGAGGAGCGCTCGCAGCACAAGAACCGTGCTCGCGCCAt                                                                                                           >  6:218439/1‑149 (MQ=255)                                            gcgTGGATACCTACCGTGCCTCCGGTGCCGGCGGCCAGCACGTCAACAAGACCGATTCGGCGATCCGTATCACTCACTTGCCCACCGGTATCGTGGTCGAATGCCAGGAGGAGCGCTCGCAGCACAAGAACCGTGCTCGCGCCATGTcc                                                                                                       <  7:209739/149‑1 (MQ=255)                                               tGGATACCTACCGTGCCTCCGGTGCCGGCGGCCAGCACGTCAACAAGACCGATTCGGCGATCCGTATCACTCACTTGCCCACCGGTATCGTGGTCGAATGCCAGGAGGAGCGCTCGCAGCACAAGAACCGTGCTCGCGCCATGTCCTgg                                                                                                    >  2:96433/1‑149 (MQ=255)                                               tGGATACCTACCGTGCCTCCGGTGCCGGCGGCCAGCACGTCAACAAGACCGATTCGGCGATCCGTATCACTCACTTGCCCACCGGTATCGTGGTCGAATGCCAGGAGGAGCGCTCGCAGCACAAGAACCGTGCTCGCGCCATGTCCTgg                                                                                                    <  6:72979/149‑1 (MQ=255)                                                      ggagcggtcaccggaacccaccagcagcttgcgctcactggcaagggcgttctgcgcggcactggtctgcatgtcgttcagcttggccgacaGCCAGGAGGAGCGCTCGCAGCACAAGAACCGTGCTCGCGCCATGTCCTGGCTGTc                                                                                               >  1:164287‑M1/93‑147 (MQ=255)                                                      ctaccGTGCCTCCGGTGCCGGCGGCCAGCACGTCAACAAGACCGAGTCGGCGATCCGTCTCCCTCACTTGCCCCCCGGTATCGTGGTCGAATGCCAGGAGGAGCGCTCGCAGCACATGAACCGTGCTCGCGCCATGGCCTGGCTGTCgg                                                                                             >  4:82277/1‑149 (MQ=255)                                                        accGTGCCTCCGGTGCCGGCGGCCAGCACGTCAACAAGACCGATTCGGCGATCCGTATCACTCACTTGCCCACCGGTATCGTGGTCGAATGCCAGGAGGAGCGCTCGCAGCACAAGAACCGTGCTCGCGCCATGTCCTGGCTGTCGGc                                                                                            >  6:27397/1‑148 (MQ=255)                                                          cGTGCCTCCGGTGCCGGCGGCCAGCACGTCAACAAGACCGATTCGGCGATCCGTATCACTCACTTGCCCACCGGTATCGTGGTCGAATGCCAGGAGGAGCGCTCGCAGCACAAGAACCGTGCTCGCGCCATGTCCTGGCTGTCGGCCaa                                                                                         <  3:283363/149‑1 (MQ=255)                                                           gTGCCTCCGGTGCCGGCGGCCAGCACGTCAACAAGACCGATTCGGCGATCCGTATCACTCACTTGCCCACCGGTATCGTGGTCGAATGCCAGGAGGAGCGCTCGCAGCACAAGAACCGTGCTCGCGCCATGTCCTGGCTGTCGGCCAAg                                                                                        <  5:293705/149‑1 (MQ=255)                                                                tCCGGTGCCGGCGGCCAGCACGTCAACAAGACCGATTCGGCGATCCGTATCACTCACTTGCCCACCGGTATCGTGGTCGAATGCCAGGAGGAGCGCTCGCAGCACAAGAACCGTGCTCGCGCCATGTCCTGGCTGTCGGCCAAGCTGaa                                                                                   >  3:122455/1‑149 (MQ=255)                                                                  cGGTGCCGGCGGCCAGCACGTCAACAAGACCGATTCGGCGATCCGAATCACTCACTTGCCCACCGGTATCGTGGTCGAATGCCAGGAGGAGCGCTCGCAGCACAAGAACCGTGCTCGCGCCATGTCCTGGCTGTCGGCCAAGCTGaa                                                                                   <  6:39393/147‑1 (MQ=255)                                                                    gTGCCGGCGGCCAGCACGTCAACAAGACCGATTCGGCGATCCGTATCACTCACTTGCCCACCGGTATCGTGGTCGAATGCCAGGAGGAGCGCTCGCAGCACAAGAACCGTGCTCGCGCCATGTCCTGGCTGTCGGCCAAGCTGAACGAc                                                                               <  4:122455/149‑1 (MQ=255)                                                                                aGCACGTCAACAAGACCGATTCGGCGATCCGTATCACTCACTTGCCCACCGGTATCGTGGTCGAATGCCAGGAGGAGCGCTCGCAGCACAAGAACCGTGCTCGCGCCATGTCCTGGCTGTCGGCCAAGCTGAACGACATGCAGACCAGt                                                                   >  3:40069/1‑149 (MQ=255)                                                                                     gTCAACAAGACCGATTCGGCGATCCGTATCACTCACTTGCCCACCGGTATCGTGGTCGAATGCCAGGAGGAGCGCTCGCAGCACAAGAACCGTGCTCGCGCCATGTCCTGGCTGTCGGCCAAGCTGAACGACATGCAGACCAGTGCcgc                                                              >  5:293828/1‑149 (MQ=255)                                                                                      gctcactggcaagggcgttctgcgcggcactggtctgcatgtcgttcagcttggccgacaGCCAGGAGGAGCGCTCGCAGCACAAGAACCGTGCTCGCGCCATGTCCTgg                                                                                                    <  4:261929‑M1/50‑1 (MQ=255)                                                                                      gctcactggcaagggcgttctgcgcggcactggtctgcatgtcgttcagcttggccgacaGCCAGGAGGAGCGCTCGCAGCACAAGAACCGTGCTCGCGCCATGTCCTgg                                                                                                    >  3:261929‑M1/61‑110 (MQ=255)                                                                                       caacaaGACCGATTCGGCGATCCGTATCACTCACTTGCCCACCGGTATCGTGGTCGAATGCCAGGAGGAGCGCTCGCAGCACAAGAACCGTGCTCGCGCCATGTCCTGGCTGTCGGCCAAGCTGAACGACATGCAGACCAGTGCcgcg                                                             >  7:133062/1‑148 (MQ=255)                                                                                           aaGACCGATTCGGCGATCCGTATCACTCACTTGCCCACCGTTTTTCCCGTCGAATGCCAGGAGGAGCGCTCGCAGCACAAGAACCGTGCTCGCGCCATGTCCTGGCTGTCGGCCAAGCTGAACGACATGCAGACCAGTGCCGCGCAGaa                                                        <  1:108856/149‑1 (MQ=255)                                                                                                  aTTCGGCGATCCGTATCACTCACTTGCCCACCGGTATCGTGGTCGAATGCCAGGAGGAGCGCTCGCAGCACAAGAACCGTGCTCGCGCCATGTCCTGGCTGTCGGCCAAGCTGAACGACATGCAGACCAGTGCCGCGCAGAACGCCCtt                                                 <  8:50324/149‑1 (MQ=255)                                                                                                  aTTCGGCGATCCGTATCACTCACTTGCCCACCGGTATCGTGGTCGAATGCCAGGAGGAGCGCTCGCAGCACAAGAACCGTGCTCGCGCCATGTCCTGGCTGTCGGCCAAGCTGAACGACATGCAGACCAGTGCCGCGCAGAACGCCCtt                                                 >  4:226636/1‑149 (MQ=255)                                                                                                        cGATCCGTATCACTCACTTGCCCACCGGTATCGTGGTCGAATGCCAGGAGGAGCGCTCGCAGCACAAGAACCGTGCTCGCGCCATGTCCTGGCTGTCGGCCAAGCTGAACGACATGCAGACCAGTGCCGCGCAGAACGCCCTTGCCAGt                                           <  6:293828/149‑1 (MQ=255)                                                                                                                 tcactcacTTGCCCACCGGTATCGTGGTCGAATGCCAGGAGGAGCGCTCGCAGCACAAGAACCGTGCTCGCGCCATGTCCTGGCTGTCGGCCAAGCTGAACGACATGCAGACCAGTGCCGCGCAGAACGCCCTTGCCAGTGAGCGCAAg                                  >  1:81720/1‑149 (MQ=255)                                                                                                                   actcactTGCCCACCGGTATCGTGGTCGAATGCCAGGAGGAGCGCTCGCAGCACAAGAACCGTGCTCGCGCCATGTCCTGGCTGTCGGCCAAGCTGAACGACATGCAGACCAGTGCCGCGCAGAACGCCCTTGCCAGTGAGCGCAAgct                                >  5:236737/1‑149 (MQ=255)                                                                                                                   actcactTGCCCACCGGTATCGTGGTCGAATGCCAGGAGGAGCGCTCGCAGCACAAGAACCGTGCTCGCGCCATGTCCTGGCTGTCGGCCAAGCTGAACGACATGCAGACCAGTGCCGCGCAGAACGCCCTTGCCAGTGAGCGCAAgc                                 <  5:218439/148‑1 (MQ=255)                                                                                                                     tcactTGCCCACCGGTATCGTGGTCGAATGCCAGGAGGAGCGCTCGCAGCACAAGAACCGTGCTCGCGCCATGTCCTGGCTGTCGGCCAAGCTGAACGACATGCAGACCAGTGCCGCGCAGAACGCCCTTGCCAGTGAGCGCAAgctgc                              >  2:102854/1‑149 (MQ=255)                                                                                                                     tcactTGCCCACCGGTATCGTGGTCGAATGCCAGGAGGAGCGCTCGCAGCACAAGAACCGTGCTCGCGCCATGTCCTGGCTGTCGGCCAAGCTGAACGACATGCAGACCAGTGCCGCGCAGAACGCCCTTGCCAGTGAGCGCAAgctgc                              >  7:209087/1‑149 (MQ=255)                                                                                                                       actTGCCCACCTGTATCGTGGTCGAATGCCAGGAGGAGCGCTCGCAGCACAAGAACCGTGCTCGCGCCATGTGCTGGCTGTCGTCCAAGCTGAACGACATGCAGACCAGTGCCGCGCAGAACGCCCTTGCCAGTGAGCGCAAGctgctg                            <  5:242050/149‑1 (MQ=255)                                                                                                                       actTGCCCACCGGTATCGTGGTCGAATGCCAGGAGGAGCGCTCGCAGCACAAGAACCGTGCTCGCGCCATGTCCTGGCTGTCGGCCAAGCTGAACGACATGCAGACCAGTGCCGCGCAGAACGCCCTTGCCAGTGAGCGCAAgctgct                             <  5:27397/148‑1 (MQ=255)                                                                                                                       actTGCCCACCGGTATCGTGGTCGAATGCCAGGAGGAGCGCTCGCAGCACAAGAACCGTGCTCGCGCCATGTCCTGGCTGTCGGCCAAGCTGAACGACATGCAGACCAGTGCCGCGCAGAACGCCCTTGCCAGTGAGCGCAAGctgctg                            >  6:295621/1‑149 (MQ=255)                                                                                                                         ttGCCCACCGGTATCGTGGTCGAATGCCAGGAGGAGCGCTCGCAGCACAAGAACCGTGCTCGCGCCATGTCCTGGCTGTCGGCCAAGCTGAACGACATGCAGACCAGTGCCGCGCACACCGCACATGCCAGTGAGCGCAAGCTGCtggt                          >  4:237635/1‑149 (MQ=255)                                                                                                                           gCCCACCGGTATCGTGGTCGAATGCCAGGAGGAGCGCTCGCAGCACAAGAACCGTGCTCGCGCCATGTCCTGGCTGTCGGCCAAGCTGAACGACATGCAGACCAGTGCCGCGCAGAACGCCCTTGCCAGTGAGCGCAAGCTGCtggtg                         <  6:236737/148‑1 (MQ=255)                                                                                                                                ccGGTATCGTGGTCGAATGCCAGGAGGAGCGCTCGCAGCACAAGAACCGTGCTCGCGCCATGTCCTGGCTGTCGGCCAAGCTGAACGACATGCAGACCAGTGCCGCGCAGAACGCCCTTGCCAGTGAGCGCAAGCTGCTGGTGGGTTcc                   <  3:226636/149‑1 (MQ=255)                                                                                                                                 cGGTATCGTGGTCGAATGCCAGGAGGAGCGCTCGCAGCACAAGAACCGTGCTCGCGCCATGTCCTGGCTGTCGGCCAAGCTGAACGACATGCAGACCAGTGCCGCGCAGAACGCCCTTGc                                               >  5:206819/1‑120 (MQ=255)                                                                                                                                 cGGTATCGTGGTCGAATGCCAGGAGGAGCGCTCGCAGCACAAGAACCGTGCTCGCGCCATGTCCTGGCTGTCGGCCAAGCTGAACGACATGCAGACCAGTGCCGCGCAGAACGCCCTTGc                                               <  6:206819/120‑1 (MQ=255)                                                                                                                                 cGGTATCGTGGTCGAATGCCAGGAGGAGCGCTCGCAGCACAAGAACCGTGCTCGCGCCATGTCCTGGCTGTCGGCCAAGCTGAACGACATGCAGACCAGTGCCGCGCAGAACGCCCTTGCCAGTGAGCGCAAGCTGCTGGTGGGTTCCg                  <  8:226903/149‑1 (MQ=255)                                                                                                                                 cGGTATCGTGGTCGAATGCCAGGAGGAGCGCTCGCAGCACAAGAACCGTGCTCGCGCCATGTCCTGGCTGTCGGCCAAGCTGAACGACATGCAGACCAGTGCCGCGCAGAACGCCCTTGCCAGTGAGCGCAAGCTGCTGGTGGGTTCCg                  >  1:222442/1‑149 (MQ=255)                                                                                                                                         tGGTCGAATGCCAGGAGGAGCGCTCGCAGCACAAGAACCGTGCTCGCGCCATGTCCTGGCTGTCGGCCAAGCTGAACGACATGCAGACCAGTGCCGCGAAGAACGCCCATGCCAGTGAGCGCAAGCTGCTGCTGCGTTCCGGTGACCg           >  6:264820/1‑148 (MQ=255)                                                                                                                                              gAATGCCAGGAGGAGCGCTCGCAGCACAAGAACCGTGCTCGCGCCATGTCCTGGCTGTCGGCCAAGCTGAACGACATGCAGACCAGTGCCGCGCAGAACGCCCTTGCCAGTGAGCGCAAGCTGCTGGTGGGTTCCGGTGACCGCTCCGa     <  8:133062/149‑1 (MQ=255)                                                                                                                                                aTGCCAGGAGGAGCGCTCGCAGCACAAGAACCGTGCTCGCGCCATGTCCTGGCTGTCGGCCAAGCTGAACGACATGCAGACCAGTGCCGCGCAGAACGCCCTTGCCAGTGAGCGCAAGCTGCTGGTGGGTTCCGGTGACCGCTCCGAgc   <  2:222442/149‑1 (MQ=255)                                                                                                                                                  GCCAGGAGGAGCGCTCGCAGCACAAGAACCGTGCTCGCGCCATGTCCTGGCTGTCGGCCAAGCTGAACGACATGCAGACCAGTGCCGCGCAGAACGCCCTTGCCAGTGAGCGCAAGCTGCTGGTGGGTTCCGGTGACCGCTCCGAgcg  <  2:314265‑M1/148‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                    CCGGACGAGCAGGCCGCCATCGAAATCAACCCGGCCGACTTGCGCGTGGATACCTACCGTGCCTCCGGTGCCGGCGGCCAGCACGTCAACAAGACCGATTCGGCGATCCGTATCACTCACTTGCCCACCGGTATCGTGGTCGAATGCCAGGAGGAGCGCTCGCAGCACAAGAACCGTGCTCGCGCCATGTCCTGGCTGTCGGCCAAGCTGAACGACATGCAGACCAGTGCCGCGCAGAACGCCCTTGCCAGTGAGCGCAAGCTGCTGGTGGGTTCCGGTGACCGCTCCGAGCG  >  NC_002947/853126‑853418

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.