New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 1252645 | 44 (0.850) | 3 (0.060) | 3/256 | NT | 7.0% | coding (165/972 nt) | PP_1095 | electron transport complex protein |
? | NC_002947 | = 1252684 | 37 (0.740) | coding (126/972 nt) | PP_1095 | electron transport complex protein |
GTAGGCCTGCTTGCCGATACCGATCGCGACACTTGCCGCGATGACCGGCAGCCACCATGGCGCCAAGGTGGGCAGGGCGGCCGCCAGCAGTACGGCGGTCACCAGTGCGCTGCCGTCGTTTAGCGCCTGGCTCAGCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGGCGCACAGCAACAGGTTCAGCATCATGCCCCAGCCATGCAGCCACAACAGCGCCAGCAGCCCAGGCGTGCAGGCGAGCAAGACCAGGCCCATGCTGGTGCGTAGGCGCG > NC_002947/1252498‑1252793 | gTAGGCCTGCTTGCCGATACCGATCGCGACACTTGCCGCGATGACCGGCAGCCACCATGGCGCCAAGGTGGGCAGGGCGGCCGCCAGCAGTACGGCGGTCACCAGTGCGCTGCCGTCGTTTAGCGCCTGGCTCAGCGATTGGCTGCGCa < 3:132480/149‑1 (MQ=255) gCCTGCTTGCCGATACCGATCGCGACACTTGCCGCGATGACCGGCAGCCACCATGGCGCCAAGGTGGGCAGGGCGGCCGCCAGCAGTACGGCGGTCACCAGTGCGCTGCCGTCGTTTAGCGCCTGGCTCAGTGATTGGCTGCGCAGTGc > 8:198630/1‑149 (MQ=255) gCCTGCTTGCCGATACCGATCGCGACACTTGCCGCGATGACCGGCAGCCACCATGGCGCCAAGGTGGGCAGGGCGGCCGCCAGCAGTACGGCGGTCACCAGTGCGCTGCCGTCGTTTAGCGCCTGGCTCAGCGATTGGCTGCGCAGTGc < 7:88320/149‑1 (MQ=255) gCCTGCTTGCCGATACCGATCGCGACACTTGCCGCGATGACCGGCAGCCACCATGGCGCCAAGGTGGGCAGGGCGGCCGCCAGCAGTACGGCGGTCACCAGTGCGCTGCCGTCGTTTAGCGCCTGGCTCAGCGATTGGCTGCGCAGTGc < 5:51830/149‑1 (MQ=255) cTGCTTGCCGATACCGATCGCGACACTTGCCGCGATGACCGGCAGCCACCATGGCGCCAAGGTGGGCAGGGCGGCCGCCAGCAGTACGGCGGTCACCAGTGCGCTGCCGTCGTTTAGCGCCTGGCTCAGCGATTGGCTGCGCAGTGCca < 3:7602/149‑1 (MQ=255) gCCGATACCGATCGCGACACTTGCCGCGATGACCGGCAGCCACCATGGCGCCAAGGTGGGCAGGGCGGCCGCCAGCAGTACGGCGGTCACCAGTGCGCTGCCGTCGTTTAGCGCCTGGCTCAGCGATTGGCTGCGCAGTGCCagcagc > 6:93172/1‑148 (MQ=255) ccGATCGCGCCACTTGCCGCGATGACCGGCAGCCACCATGGCGCCAAGGTGGGCAGGGCGGCCGCCAGCAGTACGGCGGTCACCAGTGCGCTGCCGTCGTTTAGCGCCTGGCTCAGCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTc < 8:199371/149‑1 (MQ=255) cGATCGCGACACTTGCCGCGATGACCGGCAGCCACCATGGCGCCAAGGTGGGCAGGGCGGCCGCCAGCAGTACGGCGGTCACCAGTGCGCTGCCGTCGTTTAGCGCCTGGCTCAGCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCg < 6:10482/149‑1 (MQ=255) gATCGCGACACTTGCCGCGATGACCGGCAGCCACCATGGCGCCAAGGTGGGCAGGGCGGCCGCCAGCAGTACGGCGGTCACCAGTGCGCTGCCGTCGTTTAGCGCCTGGCTCAGCGATTGGCTGCGCAGTGCCAACAGCAATGCCTc > 4:286848/1‑147 (MQ=255) gATCGCGACACTTGCCGCGATGACCGGCAGCCACCATGGCGCCAAGGTGGGCAGGGCGGCCGCCAGCAGTACGGCGGTCACCAGTGCGCTGCCGTCGTTTAGCGCCTGGCTCAGCGATTGGCTGCGCAGTGCCAACAGCAATGCCTc < 3:286848/147‑1 (MQ=255) aTCGCGACACTTGCCGCGATGACCGGCAGCCACCATGGCGCCAAGGTGGGCAGGGCGGCCGCCAGCAGTACGGCGGTCACCAGTGCGCTGCCGTCGTTTAGCGCCTGGCTCAGCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGca > 4:4413/1‑149 (MQ=255) aTCGCGACACTTGCCGCGATGACCGGCAGCCACCATGGCGCCAAGGTGGGCAGGGCGGCCGCCAGCAGTACGGCGGTCACCAGTGCGCTGCCGTCGTTTAGCGCCTGGCTCAGCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGca < 7:153573/149‑1 (MQ=255) aTCGCGACACTTGCCGCGATGACCGGCAGCCACCATGGCGCCAAGGTGGGCAGGGCGGCCGCCAGCAGTACGGCGGTCACCAGTGCGCTGCCGTCGTTTAGCGCCTGGCTCAGCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGca > 2:198678/1‑149 (MQ=255) gcgACACTTGCCGCGATGACCGGCAGCCACCATGGCGCCAAGGTGGGCAGGGCGGCCGCCAGCAGTACGGCGGTCACCAGTGCGCTGCCGTCGTTTAGCGCCTGGCTCAGCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGcaca < 7:120673/148‑1 (MQ=255) gcgACACTTGCCGCGATGACCGGCAGCCACCATGGCGCCAAGGTGGGCAGGGCGGCCGCCAGCAGTACGGCGGTCACCAGTGCGCTGCCGTCGTTTAGCGCCTGGCTCAGCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGCAcag > 8:100870/1‑149 (MQ=255) gACACTTGCCGCGATGACCGGCAGCCACCATGGCGCCAAGGTGGGCAGGGCGGCCGCCAGCAGTACGGCGGTCACCAGTGCGCTGCCGTCGTTTAGCGCCTGGCTCAGCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGCAcagca < 5:93172/149‑1 (MQ=255) cacTTGCCGCGATGACCGGCAGCCACCATGGCGCCAAGGTGGGCAGGGCGGCCGCCAGCAGTACGGCGGTCACCAGTGCGCTGCCGTCGTTTAGCGCCTGGCTCAGCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGCACagcagc < 2:124055/149‑1 (MQ=255) acTTGCCGCGATGACCGGCAGCCACCATGGCGCCAAGGTGGGCAGGGCGGCCGCCAGCAGTACGGCGGTCACCAGTGCGCTGCCGTCGTTTAGCGCCTGGCTCAGCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAgcg > 8:175841/1‑149 (MQ=255) gCCGCGATGACCGGCAGCCACCATGGCGCCAAGGTGGGCAGGGCGGCCGCCAGCAGTACGGCGGTCACCAGTGCGCTGCCGTCGTTTAGCGCCTGGCTCAGCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGcgcg < 1:197293/147‑1 (MQ=255) gCCGCGATGACCGGCAGCCACCATGGCGCCAAGGTGGGCAGGGCGGCCGCCAGCAGTACGGCGGTCACCAGTGCGCTGCCGTCGTTTAGCGCCTGGCTCACCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGcgcg < 1:72468/147‑1 (MQ=255) cgATGACCGGCAGCCACCATGGCGCCAAGGTGGGCAGGGCGGCCGCCAGCAGTACGGCGGTCACCAGTGCGCTGCCGTCGTTTAGCGCCTGGCTCAGCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTg > 5:234185/1‑149 (MQ=255) gATGACCGGCAGCCACCATGGCGCCAAGGTGGGCAGGGCGGCCGCCAGCAGTACGGCGGTCACCAGTGCGCTGCCGTCGTTTAGCGCCTGGCTCAGCGATTGGCTGCGCcagtgccgcgctgctgtgcgaggcattgctgctggcactg > 1:22783‑M1/1‑109 (MQ=255) aCCGGCAGCCACCATGGCGCCAAGGTTGGCAGGGCGGCCGGCAGCAGTACGGCGGTCACCAGTGCGCTGCCGTCGTTTAGCGCCTGGCTCAGCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGgcgca > 4:250234‑M2/1‑144 (MQ=255) ccGGCAGCCACCATGGCGCCAAGGTGGGCAGGGCGGCCGCCAGCAGTACGGCGGTCACCAGTGCGCTGCCGTCGTTTAGCGCCTGGCTCAGCGATTGGCTGCGCcagtgccgcgctgctgtgcgaggcattgctgctggcactgcgcag < 2:22783‑M1/149‑46 (MQ=255) cGGCAGCCACCATGGCGCCAAGGTGGGCAGGGCGGCCGCCAGCAGTACGGCGGTCACCAGTGCGCTGCCGTCGTTTAGCGCCTGGCTCAGCGATTGGCTGCGCcagtgccgcgctgctgtgcgaggcattgctgctggcactgcgcagc < 1:45619‑M1/149‑47 (MQ=255) cGGCAGCCACCATGGCGCCAAGGTGGGCAGGGCGGCCGCCAGCAGTACGGCGGTCACCAGTGCGCTGCCGTCGTTTAGCGCCTGGCTCAGCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGgcgca < 6:211410‑M2/147‑6 (MQ=255) ccaccaTGGCGCCAAGGTGGGCAGGGCGGCCGCCAGCAGTACGGCGGTCACCAGTGCGCTGCCGTCGTTTAGCGCCTGGCTCAGCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGGCGCACAGCaa > 5:300089/1‑147 (MQ=255) ccaccaTGGCGCCAAGGTGGGCAGGGCGGCCGCCAGCAGTACGGCGGTCACCAGTGCGCTGCCGTCGTTTAGCGCCTGGCTCAGCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGGCGCACAGCAACa < 6:15880/149‑1 (MQ=255) tGGCGCCAAGGTGGGCAGGGCGGCCGCCAGCAGTACGGCGGTCACCAGTGCGCTGCCGTCGTTTAGCGCCTGGCTCAGCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGGCGCACAGCAACAGGTTCa < 7:229143/149‑1 (MQ=255) tGGCGCCAAGGTGGGCAGGGCGGCCGCCAGCAGTACGGCGGTCACCAGTGCGCTGCCGTCGTTTAGCGCCTGGCTCAGCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGGCGCACAGCAACAGGTTCa < 8:259926/149‑1 (MQ=255) cggcCGCCAGCAGTACGGCGGTCACCAGTGCGCTGCCGTCGTTTAGCGCCTGGCTCAGCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGGCGCACAGCAACAGGTTCAGCATCATGCCCCAGCCATGc < 5:211410/149‑1 (MQ=255) ggcCGCCAGCAGTACGGCGGTCACCAGTGCGCTGCCGTCGTTTAGCGCCTGGCTCAGCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGGCGCACAGCAACAGGTTCAGCATCATGCCCCAGCCATGCa < 6:234185/149‑1 (MQ=255) ccgccAGCAGTACGGCGGTCACCAGTGCGCTGCCGTCGTTTAGCGCCTGGCTCAGTGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGGCGCACAGCAACAGGTTCAGCATCATGCCCCAGCCATGCAGc < 7:198630/149‑1 (MQ=255) cagcagTACGGCGGTCACCAGTGCGCTGCCGTCGTTTAGCGCCTGGCTCAGCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGGCGCACAGCAACAGGTTCAGCATCATGCCCCAGCCATGCAGCcac > 6:176569/1‑148 (MQ=255) gTACGGCGGTCACCAGTGCGCTGCCGTCGTTTAGCGCCTGGCTCAGCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGGCGCACAGCAACAGGTTCAGCATCATGCCCCAGCCATGCAGCCACAACAgc < 8:21258/149‑1 (MQ=255) gTACGGCGGTCACCAGTGCGCTGCCGTCGTTTAGCGCCTGGCTCAGCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGGCGCACAGCAACAGGTTCAGCATCATGCCCCAGCCATGCAGCCACAACAgc < 6:300089/149‑1 (MQ=255) cggcggTCACCAGTGCGCTGCCGTCGTTTAGCGCCTGGCTCAGCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGGCGCACAGCAACAGGTTCAGCATCATGCCCCAGCCATGCAGCCACAACAGCGcc < 8:127050/149‑1 (MQ=255) gTCAACAGTGCGCTGCCGTCGTTTAGCGCCTGGCTCAGCGATTGCCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGGGCGACTGGCGCACAGCACCAGGTTCAGCAGCATGCGCCAGCCATTCAGGGCCAACAGCGCcagcag > 8:238212/1‑149 (MQ=255) ccGTCGTTTAGCGCCTGGCTCAGCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGGCGCACAGCAACAGGTTCAGCATCATGCCCCAGCCATGCAGCCACAACAGCGCCAGCAGCCCAGGCGTGCAGGc < 1:198678/149‑1 (MQ=255) gcCTGGCTCAGCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGGCGCACAGCAACAGGTTCAGCATCATGCCCCAGCCATGCAGCCACAACAGCGCCAGCAGCCCAGGCGTGCAGGCGAGCAAGACCAg < 8:74414/149‑1 (MQ=255) gcCTGGCTCAGCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGGCGCACAGCAACAGGTTCAGCATCATGCCCCAGCCATGCAGCCACAACAGCGCCAGCAGCCCAGGCGTGCAGGCGAGCAAGACCAg > 1:298002/1‑149 (MQ=255) gcCTGGCTCAGCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGGCGCACAGCAACAGGTTCAGCATCATGCCCCAGCCATGCAGCCACAACAGCGCCAGCAGCCCAGGCGTGCAGGCGAGCAAGACCAg > 7:74414/1‑149 (MQ=255) cTGGCTCAGCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGGCGCACAGCAACAGGTTCAGCATCATGCCCCAGCCATGCAGCCACAACAGCGCCAGCAGCCCAGGCGTGCAGGCGAGCAAGACCAGGc < 7:175841/149‑1 (MQ=255) tCAGCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGGCGCACAGCAACAGGTTCAGCATCATGCCCCAGCCATGCAGCCACAACAGCGCCAGCAGCCCAGGCGTGCAGGCGAGCAAGACCAGGCCCATg < 3:305144/149‑1 (MQ=255) tCAGCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGGCGCACAGCAACAGGTTCAGCATCATGCCCCAGCCATGCAGCCACAACAGCGCCAGCAGCCCAGGCGTGCAGGCGAGCAAGACCAGGCCCATg > 7:179768/1‑149 (MQ=255) aGCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGTAGCGCGGCACTGGCGCACAGCAACAGGTTCAGCATCATGCCCCAGCCATGCAGCCACAACAGCGCCAGCAGCCCAGGCGTGCAGGCGAGCAAGACCAGGCCCATGCt > 2:307627/1‑149 (MQ=255) gCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGGCGCACAGCAACAGGTTCAGCATCATGCCCCAGCCATGCAGCCACAACAGCGCCAGCAGCCCAGGCGTGCAGGCGAGCAAGACCAGGCCCATGCTg < 4:304807/149‑1 (MQ=255) cGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGGCGCACAGCAACAGGTTCAGCATCATGCCCCAGCCATGCAGCCACAACAGCGCCAGCAGCCCAGGCGTGCAGGCGAGCAAGACCAGGCCCATGCTgg > 3:9473/1‑149 (MQ=255) gCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGgcgcagccaatcgctgagccaggcgctaaacgacggcagcgcactggtgaccgccgtactgctggcggccgccctgcccaccttggcgccatggtggctgccg < 1:45619‑M2/149‑104 (MQ=255) gCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGGCGCACAGCAACAGGTTCAGCATCATGCCCCAGCCATGCAGCCACAACAGCGCCAGCAGCCCAGGCGTGCAGGCGAGCAAGACCAGGCCCATg > 3:73449/1‑139 (MQ=255) gCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGGCGCACAGCAACAGGTTCAGCATCATGCCCCAGCCATGCAGCCACAACAGCGCCAGCAGCCCAGGCGTGCAGGCGAGCAAGACCAGGCCCATg < 4:73449/139‑1 (MQ=255) gCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGGCGCACAGCAACAGGTTCAGCATCATGCCCCAGCCATGCAGCCACAACAGCGCCAGCAGCCCAGGCGTGCAGGCGAGCAAGACCAGGCCCATGCTGGTGCg > 2:251834/1‑147 (MQ=255) cTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGgcgcagccaatcgctgagccaggcgctaaacgacggcagcgcactggtgaccgccgtactgctggcggccgccctgcccaccttggcgccatggtggctgccgg < 2:22783‑M2/149‑105 (MQ=255) cTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGGCGCACAGCAACAGGTTCAGCATCATGCCCCAGCCATGCAGCCACAACAGCGCCAGCAGCCCAGGCGTGCAGGCGAGCAAGACCAGGCCCATGCTGGTg > 7:207539/1‑144 (MQ=255) cTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGGCGCACAGCAACAGGTTCAGCATCATGCCCCAGCCATGCAGCCACAACAGCGCCAGCAGCCCAGGCGTGCAGGCGAGCAAGACCAGGCCCATGCTGGTg < 8:207539/144‑1 (MQ=255) tGCGCcagtgccgcgctgctgtgcgaggcattgctgctggcactgcgcagccaatcgctgagccaggcgctaaacgacggcagcgcactggtgaccgccgtactgctggcggccgccctgcccaccttggcgccatggtggctgccg < 6:211410‑M1/147‑143 (MQ=255) tGCGCcagtgccgcgctgctgtgcgaggcattgctgctggcactgcgcagccaatcgctgagccaggcgctaaacgacggcagcgcactggtgaccgccgtactgctgccggccgccctgccaaccttggcgccatggtggctgccggt > 4:250234‑M1/1‑5 (MQ=255) cAGTGCCAGCAGCAATGCCTCGCACAGTAGCGCGGCACTGGCGCACAGCAACAGGTTCAGCATCATGCCCCAGCCATGCAGCCACAACAGCGCCAGCAGCCCAGGCGTGCAGGCGAGCAAGACCAGGCCCATGCTGGTGCGTAGGcgcg < 1:307627/149‑1 (MQ=255) cAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGgcgcagccaatcgctgagccaggcgctaaacgacggcagcgcactggtgaccgccgtactgctggcggccgccctgcccaccttggcgccatggtggctgccggtcatc > 1:22783‑M2/1‑40 (MQ=255) | GTAGGCCTGCTTGCCGATACCGATCGCGACACTTGCCGCGATGACCGGCAGCCACCATGGCGCCAAGGTGGGCAGGGCGGCCGCCAGCAGTACGGCGGTCACCAGTGCGCTGCCGTCGTTTAGCGCCTGGCTCAGCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGGCGCACAGCAACAGGTTCAGCATCATGCCCCAGCCATGCAGCCACAACAGCGCCAGCAGCCCAGGCGTGCAGGCGAGCAAGACCAGGCCCATGCTGGTGCGTAGGCGCG > NC_002947/1252498‑1252793 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |