New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1672445 =	48 (0.920)	3 (0.060)	3/256	NT	6.2%	coding (444/1806 nt)	PP_1467	NhaP‑type Na+(K+)/H+ antiporter
	?	NC_002947	1672488 =	45 (0.900)					coding (401/1806 nt)	PP_1467	NhaP‑type Na+(K+)/H+ antiporter

CCGCAGAAGAGCACACCGGCGAAGGTGATGAGGCTCTGGCTCAGGCCGTTACCCTCGGCGCTGGCGATGATGAAGCTGTAGACCACCACGGCGAGCAGCGCGCCGATCGGGTCGATCATGATCCCTTCCCAACGCAGGATGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTCACCAGGGTCAAGGTGCCGAAAAGAATCGCCAGCGGCCAGTCGAACCCGAGCAGCCAGTGGGTTGCCAGTGCAATCACCAGCCAGGTGAC  >  NC_002947/1672299‑1672591                                                                                                                                                   |                                                                                                                                                   ccGCAGAAGAGCACACCGGCGAAGGTGATGAGGCTCTGGCTCAGGCCGTTACCCTCGGCGCTGGCGATGATGAAGCTGTAGACCACCACGGCGAGCAGCGCGCCGATCGGGTCGATCATGATCCCTTCCCAACGCAGGATGTTCGCGAt                                                                                                                                                  >  5:151265/1‑149 (MQ=255)            cacaCCGGCGAAGGTGATGAGGCTCTGGCTCAGGCCGTTACCCTCGGCGCTGGCGATGATGAAGCTGTAGACCACCACGGCGAGCAGCGCGCCGATCGGGTCGATCATGATCCCTTCCCAACGCAGGATGTTCGCGATCGCTGCCTTTg                                                                                                                                       >  1:143845/1‑149 (MQ=255)              cacCGGCGAAGGTGATGAGGCTCTGGCTCAGGCCGTTACCCTCGGCGCTGGCGATGATGAAGCTGTAGACCACCACGGCGAGCAGCGCGCCGATCGGGTCGATCATGATCCCTTCCCAACGCAGGATGTTCGCGATCGCTGCCTTTGGc                                                                                                                                     >  4:49385/1‑149 (MQ=255)                        ggTGATGAGGCTCTGGCTCAGGCCGTTACCCTCGGCGCTGGCGATGATGAAGCTGTAGACCACCACGGCGAGCAGCGCGCCGATCGGGTCGATCATGATCCCTTCCCAACGCAGGATGTTCGCGATCGCTGCCTTTGGCCGCACCAcgc                                                                                                                           <  1:172540/149‑1 (MQ=255)                              gaGGCTCTGGCTCAGGCCGTTACCCTCGGCGCTGGCGATGATGAAGCTGTAGACCACCACGGCGAGCAGCGCGCCGATCGGGTCGATCATGATCCCTTCCCAACGCAGGATGTTCGCGATCGc                                                                                                                                               <  4:277429/123‑1 (MQ=255)                              gaGGCTCTGGCTCAGGCCGTTACCCTCGGCGCTGGCGATGATGAAGCTGTAGACCACCACGGCGAGCAGCGCGCCGATCGGGTCGATCAGGATCCCTTCCCAACGCAGGATGTTCGCGATCGc                                                                                                                                               >  3:277429/1‑123 (MQ=255)                                    ctGGCTCAGGCCGTTACCCTCGGCGCTGGCGATGATGAAGCTGTAGACCACCACGGCGAGCAGCGCGCCGATCGGGTCGATCATGATCCCTTCCCAACGCAGGATGTTCGCGATCGCTGCCTTTGGc                                                                                                                                     <  3:102926/127‑1 (MQ=255)                                    ctGGCTCAGGCCGTTACCCTCGGCGCTGGCGATGATGAAGCTGTAGACCACCACGGCGAGCAGCGCGCCGATCGGGTCGATCATGATCCCTTCCCAACGCAGGATGTTCGCGATCGCTGCCTTTGGc                                                                                                                                     >  4:102926/1‑127 (MQ=255)                                       gCTCAGGCCGTTACCCTCGGCGCTGGCGATGATGAAGCTGTAGACCACCACGGCGAGCAGCGCGCCGATCGGGTCGATCATGATCCCTTCCCAACGCAGGATGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGa                                                                                                            >  1:25455/1‑149 (MQ=255)                                           gtcacctggctggtgattgcactggcaacccactggctgctcgggttcgactggccgctggcgattcttttcggcaccttgaccctggtgaccggccccacggtGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCAc                                                                                                        >  6:93714‑M1/105‑149 (MQ=255)                                                gTTACCCTCGGCGCTGGCGATGATGAAGCTGCAGACCACCACGGCGAGCAGCGCGCCGATCGGGTCGATCATTATCCCTTCCCAACGCATGATGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTgg                                                                                                   <  3:31679/149‑1 (MQ=255)                                                    cccTCGGCGCTGGCGATGATGAAGCTGTAGACCACCACGGCGAGCAGCGCGCCGATCGGGTCGATCATGATCCCTTCCCAACGCAGGATGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGcc                                                                                               >  3:296161/1‑149 (MQ=255)                                                         ggCGCTGGCGATGATGAAGCTGTAGACCACCACGGCGAGCAGCGCGCCGATCGGGTCGATCATGATCCCTTCCCAACGCAGGATGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGt                                                                                            <  2:150515/147‑1 (MQ=255)                                                         ggCGCTGGCGATGACGAAGCTGTAGACCACCCCGGCGAGCAGCGCGCCGATCGGGTCGATCATGATCCCTTCCCAACGCAGGATGTTCGCGATCGCTGCCTTTGGCCTCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTc                                                                                           <  4:224294/148‑1 (MQ=255)                                                                gCGATGATGAAGCTGTAGACCACCACGGCGAGCAGCGCGCCGATCGGGTCGATCATGATCCCTTCCCAACGCAGGATGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTCACCAGGGt                                                                                   <  3:259203/149‑1 (MQ=255)                                                                  gatgatGAAGCTGTAGACCACCACGGCGAGCAGCGCGCCGATCGGGTCGATCATGATCCCTTCCCAACGCAGGATGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTCACCAGGGTc                                                                                  >  8:88692/1‑148 (MQ=255)                                                                    tgatgaAGCTGTAGACCACCACGGCGATCAGCGCGCCGATCGGGTCGATCATGATCCCTTCCCCACGCAGGATGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTCACCAGGGTCAAg                                                                               <  8:77730/149‑1 (MQ=255)                                                                        gaAGCTGTAGACCACCACGGCGAGCAGCGCGCCGATCGGGTCGATCATGATCCCTTCCCAACGCAGGATGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTCACCAGGGTCAAGGTg                                                                            <  3:77479/148‑1 (MQ=255)                                                                        gaAGCTGTAGACCACCACGGCGAGCAGCGCGCCGATCGGGTCGATCATGATCCCTTCCCAACGCAGGATGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTCACCAGGGTCAAGGTGc                                                                           >  3:172040/1‑149 (MQ=255)                                                                               tAGACCACCACGGCGAGCAGCGCGCCGATCGGGTCGATCATGATCCCTTCCCAACGCAGGATGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTCACCAGGGTCAAGGTGCCGaaaa                                                                     <  3:49385/148‑1 (MQ=255)                                                                               tAGACCACCACGGCGAGCAGCGCGCCGATCGGGTCGATCATGATCCCTTCCCAACGCAGGATGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTCACCAGGGTCAAGGTGCCGaaa                                                                      <  7:56129/147‑1 (MQ=255)                                                                                  accaccACGGCGAGCAGCGCGCCGATCGGGTCGATCATGATCCCTTCCCAACGCAGGATGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTCACCAGGGTCAAGGTGCCGAAAAGAAt                                                                 >  7:112918/1‑149 (MQ=255)                                                                                   ccaccaCGGCGAGCAGCGCGCCGATCGGGGCGATCATGATCCCTTCCCAACGCAGGATGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTCACCAGGGTCAAGGTGCCGAAAAGAATc                                                                <  7:244737/149‑1 (MQ=255)                                                                                       cacGGCGAGCAGCGCGCCGATCGGGTCGATCATGATCCCTTCCCAACGCAGGATGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTCACCAgg                                                                                     <  2:65417/124‑1 (MQ=255)                                                                                       cacGGCGAGCAGCGCGCCGATCGGGTCGATCATGATCCCTTCCCAACGCAGGATGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTCACCAgg                                                                                     >  1:65417/1‑124 (MQ=255)                                                                                       cacGGCGAGCAGCGCGCCGATCGGGTCGATCATGATCCCTTCCCAACGCAGGATGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTCACCAGGGTCAAGGTGCCGAAAAGAATCGCCa                                                            <  4:172040/149‑1 (MQ=255)                                                                                        ttcgactggccgctggcgattcttttcggcaccttgaccctggtgaccggccccacggtGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCAcc                                                                                                       <  3:123085‑M1/46‑1 (MQ=255)                                                                                        ttcgactggccgctggcgattcttttcggcaccttgaccctggtgaccggccccacggtGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCAcc                                                                                                       >  4:123085‑M1/60‑105 (MQ=255)                                                                                        acGGCGAGCAGCGCGCCGATCGGGTCGATCATGATCCCTTCCCAACGCAGGATGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTCACCAGGGTCAAGGTGCCGAAAAGAATCGCCAg                                                           <  6:151265/149‑1 (MQ=255)                                                                                          ggCGAGCAGCGCGCCGATCGGGTCGATCATGATCCCTTCCCAACGCAGGATGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTCACCAGGGTCAAGGTGCCGAAAAGAATCGCCAGCg                                                         <  6:117346/149‑1 (MQ=255)                                                                                           gCGAGCAGCGCGCCGATCGGGTCGATCATGATCCCTTCCCAACGCAGGATGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTCACCAGGGTCAAGGTGCCGAAAAGAATCGCCAGCgg                                                        <  7:68319/149‑1 (MQ=255)                                                                                           gCGAGCAGCGCGCCGATCGGGTCGATCATGATCCCTTCCCAACGCAGGATGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTCACCAGGGTCAAGGTGCCGAAAAGAATCGCCAGCgg                                                        >  6:244944/1‑149 (MQ=255)                                                                                            cGAGCAGCGCGCCGATCGGGTCGATCATGATCCCTTCCCAACGCAGGATGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTCACCAGGGTCAAGGTGCCGAAAAGAATCGCCAGCGGc                                                       <  2:25455/149‑1 (MQ=255)                                                                                              agcagcGCGCCGATCGGGTCGATCATGATCCCTTCCCAACGCAGGATGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTCACCAGGGTCAAGGTGCCGAAAAGAATCGCCAGCGGc                                                       >  1:196327/1‑147 (MQ=255)                                                                                                     cgcCGATCGGGTCGATCATGATCCCTTCCCAACGCAGGATGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATTGGCACGATCACCGTGGGGCCGGTCACCAGGGTCAAGGTGCCGAAAAGAATCGCCAGCGGCCAGTCGAAc                                              <  2:196327/149‑1 (MQ=255)                                                                                                     cgcCGATCGGGTCGATCATGATCCCTTCCCAACGCAGGATGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTCACCAGGGTCAAGGTGCCGAAAAGAATCGCCAGCGGCCAGTCGAAc                                              <  5:233944/149‑1 (MQ=255)                                                                                                         gATCGGGTCGATCATGATCCCTTCCCAACGCAGGATGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTCACCAGGGTCAAGGTGCCGAAAAGAATCGCCAGCGGCCAGTCGAAccc                                            >  6:252843/1‑147 (MQ=255)                                                                                                           tCGGGTCGATCATGATCCCTTCCCAACGCAGGATGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTCACCAGGGTCAAGGTGCCGAAAAGAATCGCCAGCGGCCAGTCGAACCCGagc                                        <  7:88692/149‑1 (MQ=255)                                                                                                              ggTCGATCATGATCCCTTCCCAACGCAGGATGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTCACCAGGGTCAAGGTGCCGAAAAGAATCGCCAGCGGCCAGTCGAACCCGagcagc                                     <  4:296161/149‑1 (MQ=255)                                                                                                               gTCGATCATGATCCCTTCCCAACGCAGGATGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTCACCAGGGTCAAGGTGCCGAAAAGAATCGCCAGCGGCCAGTCGAACCCGagcagc                                     >  5:45419/1‑148 (MQ=255)                                                                                                                     cATGATCCCTTCCCAACGCAGGATGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTCACCAGGGTCAAGGTGCCGAAAAGAATCGCCAGCGGCCAGTCGAACCCGAGCAGCCAGTggg                              >  8:10414/1‑149 (MQ=255)                                                                                                                          tCCCTTCCCAACGCAGCATGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTCACCAGGGTCAAGGTGCCGAAAAGAATCGCCAGCGGCCAGTCGAACCCGAGCAGCCAGTGGGTTGc                          >  8:8503/1‑148 (MQ=255)                                                                                                                           cccTTCCCAACGCAGGATGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTCACCAGGGTCAAGGTGCCGAAAAGAATCGCCAGCGGCCAGTCGAACCCGAGCAGCCAGTgg                               <  4:282232/142‑1 (MQ=255)                                                                                                                           cccTTCCCAACGCAGGATGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTCACCAGGGTCAAGGTGCCGAAAAGAATCGCCAGCGGCCAGTCGAACCCGAGCAGCCAGTgg                               >  3:282232/1‑142 (MQ=255)                                                                                                                             cTTCCCAACGCAGGATGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTc                                                                                           >  7:63221/1‑80 (MQ=255)                                                                                                                             cTTCCCAACGCAGGATGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTc                                                                                           <  8:63221/80‑1 (MQ=255)                                                                                                                                   aaCGCAGGATGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTCACCAGGGTCAAGGTGCCGAAAAGAATCGCCAGCGGCCAGTCGAACCCGAGCAGCCAGTGGGTTGCCAGTGCAATc                <  5:117899/149‑1 (MQ=255)                                                                                                                                       cAGGATGTTCGCGATCGCTGCCTTTGGCCGCCCCACGCGCAGCATGGGCACGATCCCCGTGGGGCCGGTCCCCAGGTTAACGTTGCCGAAAAGAATCGCCAGCGGCAAGTCGAACCAGAGCAGCCAGGGGGGTGACAGGTCAATCAc              >  5:314132/1‑147 (MQ=255)                                                                                                                                         ggATGTTCGCGATCGCTGCCTTTGGCCGCACCCCGCGCAGCATGGGCACGATCACCGTGGGGCCGGTCCCCAGGGTCAAGGTGCGGAAAAGAATCGCCAGCGGCCAGTCGAACCCGCGCAGCCAGTGGGTTGCCAGTGCAATCAccagc          >  4:291281/1‑149 (MQ=255)                                                                                                                                            tGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTCACCAGGGTCAAGGTGCCGAAAAGAATCGCCAGCGGCCAGTCGAACCCGAGCAGCCAGTGGGTTGCCAGTGCAATCAccagccag       <  6:45419/149‑1 (MQ=255)                                                                                                                                            tGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTCACCAGGGTCAAGGTGCCGAAAAGAATCGCCAGCGGCCAGTCGAACCCGAGCAGCCAGTGGGTTGCCAGTGCAATCAccagccag       <  5:244944/149‑1 (MQ=255)                                                                                                                                             gTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTCACCAGGGTCAAGGTGCCGAAAAGAATCGCCAGCGGCCAGTCGAACCCGAGCAGCCAGTGGGTTGCCAGTGCAATCACCAGCCAgg      >  3:145522/1‑149 (MQ=255)                                                                                                                                                 gcgATCGCTGCCTTTGGCCGCACCAAGCGCAGCATGGGCACGATCACCGTGGGGACGGTCACCAGGGTCAAGGTGCAGAAAAGAATCGCCAGCGGCCAGTAGAACCAGAGAAGACAGTGGGTTGCCAGTGCAATCACCAGCCAGGTGAc  >  2:245968/1‑149 (MQ=255)                                                                                                                                                  cgATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCTGGTCACCAGGGTCAAGGTGCCGAAAAGAATCGCCAGCGGCCAGTCGAACCCGAGCAGCCAGTGGGTTGCCAGTGCAATCACCAGCCAGGTGAc  >  7:89283/1‑148 (MQ=255)                                                                                                                                                   GATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTCACCAGGGTCAAGGTGCCGAAAAGAATCGCCAGCGGCCAGTCGAACCCGAGCAGCCAGTGGGTTGCCAGTGCAATCACCAGCCAGGTGAc  <  6:156750‑M1/147‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                   CCGCAGAAGAGCACACCGGCGAAGGTGATGAGGCTCTGGCTCAGGCCGTTACCCTCGGCGCTGGCGATGATGAAGCTGTAGACCACCACGGCGAGCAGCGCGCCGATCGGGTCGATCATGATCCCTTCCCAACGCAGGATGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTCACCAGGGTCAAGGTGCCGAAAAGAATCGCCAGCGGCCAGTCGAACCCGAGCAGCCAGTGGGTTGCCAGTGCAATCACCAGCCAGGTGAC  >  NC_002947/1672299‑1672591

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.