New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1672445 =	48 (0.920)	3 (0.060)	3/256	NT	6.2%	coding (444/1806 nt)	PP_1467	NhaP‑type Na+(K+)/H+ antiporter
	?	NC_002947	1672488 =	45 (0.900)					coding (401/1806 nt)	PP_1467	NhaP‑type Na+(K+)/H+ antiporter

AGGCCGTTACCCTCGGCGCTGGCGATGATGAAGCTGTAGACCACCACGGCGAGCAGCGCGCCGATCGGGTCGATCATGATCCCTTCCCAACGCAGGATGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTCACCAGGGTCAAGGTGCCGAAAAGAATCGCCAGCGGCCAGTCGAACCCGAGCAGCCAGTGGGTTGCCAGTGCAATCACCAGCCAGGTGACCAGTGCGCCCACCGTGACCAGGCGATGCACCACGCTGCCGATCT  >  NC_002947/1672341‑1672635                                                                                                                                                    |                                                                                                                                                    gtcacctggctggtgattgcactggcaacccactggctgctcgggttcgactggccgctggcgattcttttcggcaccttgaccctggtgaccggccccacggtGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCAc                                                                                                                                                    >  6:93714‑M1/105‑149 (MQ=255)      gTTACCCTCGGCGCTGGCGATGATGAAGCTGCAGACCACCACGGCGAGCAGCGCGCCGATCGGGTCGATCATTATCCCTTCCCAACGCATGATGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTgg                                                                                                                                               <  3:31679/149‑1 (MQ=255)          cccTCGGCGCTGGCGATGATGAAGCTGTAGACCACCACGGCGAGCAGCGCGCCGATCGGGTCGATCATGATCCCTTCCCAACGCAGGATGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGcc                                                                                                                                           >  3:296161/1‑149 (MQ=255)               ggCGCTGGCGATGATGAAGCTGTAGACCACCACGGCGAGCAGCGCGCCGATCGGGTCGATCATGATCCCTTCCCAACGCAGGATGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGt                                                                                                                                        <  2:150515/147‑1 (MQ=255)               ggCGCTGGCGATGACGAAGCTGTAGACCACCCCGGCGAGCAGCGCGCCGATCGGGTCGATCATGATCCCTTCCCAACGCAGGATGTTCGCGATCGCTGCCTTTGGCCTCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTc                                                                                                                                       <  4:224294/148‑1 (MQ=255)                      gCGATGATGAAGCTGTAGACCACCACGGCGAGCAGCGCGCCGATCGGGTCGATCATGATCCCTTCCCAACGCAGGATGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTCACCAGGGt                                                                                                                               <  3:259203/149‑1 (MQ=255)                        gatgatGAAGCTGTAGACCACCACGGCGAGCAGCGCGCCGATCGGGTCGATCATGATCCCTTCCCAACGCAGGATGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTCACCAGGGTc                                                                                                                              >  8:88692/1‑148 (MQ=255)                          tgatgaAGCTGTAGACCACCACGGCGATCAGCGCGCCGATCGGGTCGATCATGATCCCTTCCCCACGCAGGATGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTCACCAGGGTCAAg                                                                                                                           <  8:77730/149‑1 (MQ=255)                              gaAGCTGTAGACCACCACGGCGAGCAGCGCGCCGATCGGGTCGATCATGATCCCTTCCCAACGCAGGATGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTCACCAGGGTCAAGGTg                                                                                                                        <  3:77479/148‑1 (MQ=255)                              gaAGCTGTAGACCACCACGGCGAGCAGCGCGCCGATCGGGTCGATCATGATCCCTTCCCAACGCAGGATGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTCACCAGGGTCAAGGTGc                                                                                                                       >  3:172040/1‑149 (MQ=255)                                     tAGACCACCACGGCGAGCAGCGCGCCGATCGGGTCGATCATGATCCCTTCCCAACGCAGGATGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTCACCAGGGTCAAGGTGCCGaaaa                                                                                                                 <  3:49385/148‑1 (MQ=255)                                     tAGACCACCACGGCGAGCAGCGCGCCGATCGGGTCGATCATGATCCCTTCCCAACGCAGGATGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTCACCAGGGTCAAGGTGCCGaaa                                                                                                                  <  7:56129/147‑1 (MQ=255)                                        accaccACGGCGAGCAGCGCGCCGATCGGGTCGATCATGATCCCTTCCCAACGCAGGATGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTCACCAGGGTCAAGGTGCCGAAAAGAAt                                                                                                             >  7:112918/1‑149 (MQ=255)                                         ccaccaCGGCGAGCAGCGCGCCGATCGGGGCGATCATGATCCCTTCCCAACGCAGGATGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTCACCAGGGTCAAGGTGCCGAAAAGAATc                                                                                                            <  7:244737/149‑1 (MQ=255)                                             cacGGCGAGCAGCGCGCCGATCGGGTCGATCATGATCCCTTCCCAACGCAGGATGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTCACCAgg                                                                                                                                 <  2:65417/124‑1 (MQ=255)                                             cacGGCGAGCAGCGCGCCGATCGGGTCGATCATGATCCCTTCCCAACGCAGGATGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTCACCAgg                                                                                                                                 >  1:65417/1‑124 (MQ=255)                                             cacGGCGAGCAGCGCGCCGATCGGGTCGATCATGATCCCTTCCCAACGCAGGATGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTCACCAGGGTCAAGGTGCCGAAAAGAATCGCCa                                                                                                        <  4:172040/149‑1 (MQ=255)                                              ttcgactggccgctggcgattcttttcggcaccttgaccctggtgaccggccccacggtGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCAcc                                                                                                                                                   <  3:123085‑M1/46‑1 (MQ=255)                                              ttcgactggccgctggcgattcttttcggcaccttgaccctggtgaccggccccacggtGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCAcc                                                                                                                                                   >  4:123085‑M1/60‑105 (MQ=255)                                              acGGCGAGCAGCGCGCCGATCGGGTCGATCATGATCCCTTCCCAACGCAGGATGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTCACCAGGGTCAAGGTGCCGAAAAGAATCGCCAg                                                                                                       <  6:151265/149‑1 (MQ=255)                                                ggCGAGCAGCGCGCCGATCGGGTCGATCATGATCCCTTCCCAACGCAGGATGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTCACCAGGGTCAAGGTGCCGAAAAGAATCGCCAGCg                                                                                                     <  6:117346/149‑1 (MQ=255)                                                 gCGAGCAGCGCGCCGATCGGGTCGATCATGATCCCTTCCCAACGCAGGATGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTCACCAGGGTCAAGGTGCCGAAAAGAATCGCCAGCgg                                                                                                    <  7:68319/149‑1 (MQ=255)                                                 gCGAGCAGCGCGCCGATCGGGTCGATCATGATCCCTTCCCAACGCAGGATGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTCACCAGGGTCAAGGTGCCGAAAAGAATCGCCAGCgg                                                                                                    >  6:244944/1‑149 (MQ=255)                                                  cGAGCAGCGCGCCGATCGGGTCGATCATGATCCCTTCCCAACGCAGGATGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTCACCAGGGTCAAGGTGCCGAAAAGAATCGCCAGCGGc                                                                                                   <  2:25455/149‑1 (MQ=255)                                                    agcagcGCGCCGATCGGGTCGATCATGATCCCTTCCCAACGCAGGATGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTCACCAGGGTCAAGGTGCCGAAAAGAATCGCCAGCGGc                                                                                                   >  1:196327/1‑147 (MQ=255)                                                           cgcCGATCGGGTCGATCATGATCCCTTCCCAACGCAGGATGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATTGGCACGATCACCGTGGGGCCGGTCACCAGGGTCAAGGTGCCGAAAAGAATCGCCAGCGGCCAGTCGAAc                                                                                          <  2:196327/149‑1 (MQ=255)                                                           cgcCGATCGGGTCGATCATGATCCCTTCCCAACGCAGGATGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTCACCAGGGTCAAGGTGCCGAAAAGAATCGCCAGCGGCCAGTCGAAc                                                                                          <  5:233944/149‑1 (MQ=255)                                                               gATCGGGTCGATCATGATCCCTTCCCAACGCAGGATGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTCACCAGGGTCAAGGTGCCGAAAAGAATCGCCAGCGGCCAGTCGAAccc                                                                                        >  6:252843/1‑147 (MQ=255)                                                                 tCGGGTCGATCATGATCCCTTCCCAACGCAGGATGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTCACCAGGGTCAAGGTGCCGAAAAGAATCGCCAGCGGCCAGTCGAACCCGagc                                                                                    <  7:88692/149‑1 (MQ=255)                                                                    ggTCGATCATGATCCCTTCCCAACGCAGGATGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTCACCAGGGTCAAGGTGCCGAAAAGAATCGCCAGCGGCCAGTCGAACCCGagcagc                                                                                 <  4:296161/149‑1 (MQ=255)                                                                     gTCGATCATGATCCCTTCCCAACGCAGGATGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTCACCAGGGTCAAGGTGCCGAAAAGAATCGCCAGCGGCCAGTCGAACCCGagcagc                                                                                 >  5:45419/1‑148 (MQ=255)                                                                           cATGATCCCTTCCCAACGCAGGATGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTCACCAGGGTCAAGGTGCCGAAAAGAATCGCCAGCGGCCAGTCGAACCCGAGCAGCCAGTggg                                                                          >  8:10414/1‑149 (MQ=255)                                                                                tCCCTTCCCAACGCAGCATGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTCACCAGGGTCAAGGTGCCGAAAAGAATCGCCAGCGGCCAGTCGAACCCGAGCAGCCAGTGGGTTGc                                                                      >  8:8503/1‑148 (MQ=255)                                                                                 cccTTCCCAACGCAGGATGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTCACCAGGGTCAAGGTGCCGAAAAGAATCGCCAGCGGCCAGTCGAACCCGAGCAGCCAGTgg                                                                           >  3:282232/1‑142 (MQ=255)                                                                                 cccTTCCCAACGCAGGATGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTCACCAGGGTCAAGGTGCCGAAAAGAATCGCCAGCGGCCAGTCGAACCCGAGCAGCCAGTgg                                                                           <  4:282232/142‑1 (MQ=255)                                                                                   cTTCCCAACGCAGGATGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTc                                                                                                                                       >  7:63221/1‑80 (MQ=255)                                                                                   cTTCCCAACGCAGGATGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTc                                                                                                                                       <  8:63221/80‑1 (MQ=255)                                                                                         aaCGCAGGATGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTCACCAGGGTCAAGGTGCCGAAAAGAATCGCCAGCGGCCAGTCGAACCCGAGCAGCCAGTGGGTTGCCAGTGCAATc                                                            <  5:117899/149‑1 (MQ=255)                                                                                             cAGGATGTTCGCGATCGCTGCCTTTGGCCGCCCCACGCGCAGCATGGGCACGATCCCCGTGGGGCCGGTCCCCAGGTTAACGTTGCCGAAAAGAATCGCCAGCGGCAAGTCGAACCAGAGCAGCCAGGGGGGTGACAGGTCAATCAc                                                          >  5:314132/1‑147 (MQ=255)                                                                                               ggATGTTCGCGATCGCTGCCTTTGGCCGCACCCCGCGCAGCATGGGCACGATCACCGTGGGGCCGGTCCCCAGGGTCAAGGTGCGGAAAAGAATCGCCAGCGGCCAGTCGAACCCGCGCAGCCAGTGGGTTGCCAGTGCAATCAccagc                                                      >  4:291281/1‑149 (MQ=255)                                                                                                  tGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTCACCAGGGTCAAGGTGCCGAAAAGAATCGCCAGCGGCCAGTCGAACCCGAGCAGCCAGTGGGTTGCCAGTGCAATCAccagccag                                                   <  6:45419/149‑1 (MQ=255)                                                                                                  tGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTCACCAGGGTCAAGGTGCCGAAAAGAATCGCCAGCGGCCAGTCGAACCCGAGCAGCCAGTGGGTTGCCAGTGCAATCAccagccag                                                   <  5:244944/149‑1 (MQ=255)                                                                                                   gTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTCACCAGGGTCAAGGTGCCGAAAAGAATCGCCAGCGGCCAGTCGAACCCGAGCAGCCAGTGGGTTGCCAGTGCAATCACCAGCCAgg                                                  >  3:145522/1‑149 (MQ=255)                                                                                                      ggtgatcgtgcccatgctgcgcgtggtgcggccaaaggcagcgatcACCGTGGGGCCGGTCACCAGGGTCAAGGTGCCGAAAAGAATCGCCAGCGGCCAGTCGaa                                                                                           <  3:123085‑M2/59‑1 (MQ=255)                                                                                                      ggtgatcgtgcccatgctgcgcgtggtgcggccaaaggcagcgatcACCGTGGGGCCGGTCACCAGGGTCAAGGTGCCGAAAAGAATCGCCAGCGGCCAGTCGaa                                                                                           >  4:123085‑M2/47‑105 (MQ=255)                                                                                                       gtgatcgtgcccatgctgcgcgtggtgcggccaaaggcagcgatcACCGTGGGGCCGGTCACCAGGGTCAAGGTGCCGAAAAGAATCGCCAGCGGCCAGTCGAACCCGAGCAGCCAGTGGGTTGCCAGTGCAATCACCAGCCAGGTGAc                                              >  6:93714‑M2/46‑149 (MQ=255)                                                                                                       gcgATCGCTGCCTTTGGCCGCACCAAGCGCAGCATGGGCACGATCACCGTGGGGACGGTCACCAGGGTCAAGGTGCAGAAAAGAATCGCCAGCGGCCAGTAGAACCAGAGAAGACAGTGGGTTGCCAGTGCAATCACCAGCCAGGTGAc                                              >  2:245968/1‑149 (MQ=255)                                                                                                        cgATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCTGGTCACCAGGGTCAAGGTGCCGAAAAGAATCGCCAGCGGCCAGTCGAACCCGAGCAGCCAGTGGGTTGCCAGTGCAATCACCAGCCAGGTGAc                                              >  7:89283/1‑148 (MQ=255)                                                                                                         GATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTCACCAGGGTCAAGGTGCCGAAAAGAATCGCCAGCGGCCAGTCGAACCCGAGCAGCCAGTGGGTTGCCAGTGCAATCACCAGCCAGGTGAc                                              <  6:156750‑M1/147‑1 (MQ=255)                                                                                                                 ccTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTCACCAGGGTCAAGGTGCCGAAAAGAATCGCCAGCGGCCAGTCGAACCCGAGCAGCCAGTGGGTTGCCAGTGCAATCACCAGCCAGGTGACCAGTgcgc                                      <  8:179140/147‑1 (MQ=255)                                                                                                                 ccTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTCACCAGGGTCAAGGTGCCGAAAAGAATCGCCAGCGGCCAGTCGAACCCGAGCAGCCAGTGGGTTGCCAGTGCAATCACCAGCCAGGTGACCAGTGCGcc                                     <  7:8503/148‑1 (MQ=255)                                                                                                                              cacGCGCAGCATGGGCACGATCACCGTGGGGCCGGTCACCAGGGTCAAGGTGCCGAAAAGAATCGCCAGCGGCCAGTCGAACCCGAGCAGCCAGTGGGTTGCCAGTGCAATCACCAGCCAGGTGACCAGTGCGCCCACCGTGACCAGGc                       >  1:309651/1‑149 (MQ=255)                                                                                                                                          gggCACGATCACCGTGGGGCCGGTCACCAGGGTCAAGGTGCCGAAAAGAATCGCCAGCGGCCAGTCGAACCCGAGCAGCCAGTGGGTTGCCAGTGCAATCACCAGCCAGGTGACCAGTGCGCCCACCGTGa                             >  5:217460/1‑131 (MQ=255)                                                                                                                                          gggCACGATCACCGTGGGGCCGGTCACCAGGGTCAAGGTGCCGAAAAGAATCGCCAGCGGCCAGTCGAACCCGAGCAGCCAGTGGGTTGCCAGTGCAATCACCAGCCAGGTGACCAGTGCGCCCACCGTGa                             <  6:217460/131‑1 (MQ=255)                                                                                                                                              aCGATCACCGTGGGGCCGGTCACCAGGGTCAAGGTGCCGAAAAGAATCGCCAGCGGCCAGTCGAACCCGAGCAGCCAGTGGGTTGCCAGTGCAATCACCAGCCAGGTGACCAGTGCGCCCACCGTGACCAGGCGATGCACCACGCTGcc       >  4:84693/1‑149 (MQ=255)                                                                                                                                                    aCCGTGGGTCCTTTACCCAGGGTCCAGGTGCCGCAAAGACTAGCCAGCGGCCAGTCTACCCCTAGCAGACAGGGGTGTGCCAGTGCAATCACCAGCCAGGTGAACAGTGCGCCCACCGTGCCCAGGCGATGCACCACGCTGCCGagat  <  6:314132/148‑4 (MQ=255)                                                                                                                                                    |                                                                                                                                                    AGGCCGTTACCCTCGGCGCTGGCGATGATGAAGCTGTAGACCACCACGGCGAGCAGCGCGCCGATCGGGTCGATCATGATCCCTTCCCAACGCAGGATGTTCGCGATCGCTGCCTTTGGCCGCACCACGCGCAGCATGGGCACGATCACCGTGGGGCCGGTCACCAGGGTCAAGGTGCCGAAAAGAATCGCCAGCGGCCAGTCGAACCCGAGCAGCCAGTGGGTTGCCAGTGCAATCACCAGCCAGGTGACCAGTGCGCCCACCGTGACCAGGCGATGCACCACGCTGCCGATCT  >  NC_002947/1672341‑1672635

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.