New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1806763 =	43 (0.830)	3 (0.060)	3/254	NT	7.3%	coding (446/1629 nt)	pyrG	CTP synthase
	?	NC_002947	1806797 =	35 (0.700)					coding (480/1629 nt)	pyrG	CTP synthase

GCAAAGAGCGTCGTGGTGATTATCTGGGCGCGACCATCCAGGTCATCCCGCACATCACCGACGAAATCAAGCGTCGCATCATCAAGGGTGCCGGCGATGCCGACGTGGCCCTGGTGGAGATCGGCG‑GTACCGTGGGTGATATCGAGTCGCAGCCGTTCCTCGAGGCGATTCGCCAGCTGCGTGTCGAAGTGGGCTCCAAGCGTGCCATGCTGATGCACCTGACCCTGGTCCCGTACATCGCCACCGCTGGCGAAACCAAGACCAAGCCGACCCAGCACTCGGTCAAGGAGCT  >  NC_002947/1806616‑1806907                                                                                                                                                     |                                                                                                                                                 gcagatcagcacgtcaggctgcaggccgatggagcgcagctccttgaccgagtgctgggtcggcttggtcttggtttcgccagcggtggcgatgtacgggaccagggtcaggtgcatcagcatggcacgcttggagcccacttcgacac                                                                                                                                                  >  1:26236‑M1/149‑149 (MQ=255)   aaaGAGCGTCGTGGTGATTATCTGGGCGCGACCATACAGGTCATCCCGCACATCACCGACGAAATCAAGAGTCGCATCAACAAGGGTGCCGGCGATGCCGACGTGGCCCTGGTGGAGATCGGCG‑GTACCGTGGGTGATATCGAGTCg                                                                                                                                                 >  7:202825/1‑147 (MQ=255)               ggtgATTATCTGGGCGCGACCATCCAGGTCATCCCGCACATCACCGACGAAATCAAGCGTCGCATCATCAAGGGTGCCGGCGATGCCGACGTGGCCCTGGTGGAGATCGGCG‑GTACCGTGGGTGATATCGAGTCGCAGCCGTTc                                                                                                                                        >  5:217350/1‑144 (MQ=255)               ggtgATTATCTGGGCGCGACCATCCAGGTCATCCCGCACATCACCGACGAAATCAAGCGTCGCATCATCAAGGGTGCCGGCGATGCCGACGTGGCCCTGGTGGAGATCGGCG‑GTACCGTGGGTGATATCGAGTCGCAGCCGTTc                                                                                                                                        <  6:217350/144‑1 (MQ=255)                 ttaTTATCTGGGCGCGACCATCCAGGTCATCCCGCACATCACCGACGAAATCAAGCGTCGCATCATCAAGGGTGCCGGCGATGCCGACGTGGCCCTGGTGGAGATCGGCG‑GTACCGTGGGTGATATCGAGTCGCAGCCGTTCCTCGAgg                                                                                                                                 <  3:234167/147‑1 (MQ=255)                    ttATCTGGGCGCGACCATCCAGGGCATCCCGCCCATCACCGACGAAATCAAGCGTCGCAGCATCAAGGGTGCCGGCGCTGCCGACGTGGCCCTGGGGGAGATCGGCG‑GTACCGTGGGTGATATCGAGTCGCAGCCGTTCCTCGAg                                                                                                                                  >  6:213156/1‑145 (MQ=255)                           ggCGCGACCATCCAGGTCATCCCGCACATCACCGACGAAATCAAGCGTCGCATCATCAAGGGTGCCGGCGATGCCGACGTGGCCCTGGTGGAGATCGGCGCGTACCGTGGGTGATATCGAGTCGCAGCCGTTCCTCGAGGCGATTCGcc                                                                                                                        <  1:240234/149‑1 (MQ=255)                           ggCGCGACCATCCAGGTCATCCCGCACATCACCGACGAAATCAAGCGTCGCATCATCAAGGGTGCCGGCGATGCCGACGTGGCCCTGGTGGAGATCGGCG‑GTACCGTGGGTGATATCGAGTCGCAGCCGTTCCTCGAGGCGATTCGc                                                                                                                         >  1:170660/1‑147 (MQ=255)                           ggCGCGACCATCCAGGTCATCCCGCACATCACCGACGAAATCAAGCGTCGCATCATCAAGGGTGCCGGCGATGCCGACGTGGCCCTGGTGGAGATCGGCG‑GTACCGTGGGTGATATCGAGTCGCAGCCGTTCCTCGAGGCGATTCGc                                                                                                                         <  3:171109/147‑1 (MQ=255)                           ggCGCGACCATCCAGGTCATCCCGCACATCACCGACGAAATCAAGCGTCGCATCATCAAGGGTGCCGGCGATGCCGACGTGGCCCTGGTGGAGATCGGCG‑GTACCGTGGGTGATATCGAGTCGCAGCCGTTCCTCGAGGCGATTCGc                                                                                                                         >  2:179157/1‑147 (MQ=255)                             cgcgACCATCCAGGTCATCCCGCACATCACCGACGAAATCAAGCGTCGCATCATCAAGGGTGCCGGCGATGCCGACGTGGCCCTGGTGGAGATCGGCG‑GTACCGTGGGTGATATCGAGTCGCAGCCGTTCCTCGAGGCGATTCGCCAGc                                                                                                                     >  2:216192/1‑149 (MQ=255)                                    gcagctccttgaccgagtgcttggtctgcttggtctttgtttcgccagcggtggcgatgtacgggaccagggtcatgttaatcagcatgtcacgcttggagcccacttctacaCGCAGCCGTTCCTCGAGGCGATTCGCCAGCTGCgtg                                                                                                               >  6:304242‑M1/114‑149 (MQ=255)                                     tCCAGGTCATCCCGCACATCACCGACGAAATCAAGCGTCGCATCATCAAGGGTGCCGGCGATGCCGCCGTGGCCCTGGTGGAGATCGGCG‑GTACCGTGGGTGATATCGAGTCGCAGCCGTTCCTCGAGGCGATTCGCCAGCTGCGTGTc                                                                                                             >  7:68658/1‑149 (MQ=255)                                     tCCAGGTCATCCCGCACATCACCGACGAAATCAAGCGTCGCATCATCAAGGGTGCCGGCGATGCCGACGTGGCCCTGGTGGAGATCGGCG‑GTACCGTGGGTGATATCGAGTCGCAGCCGTTCCTCGAGGCGATTCGCCAGCTGCGTGTc                                                                                                             >  4:124041/1‑149 (MQ=255)                                        aGGTCATCCCGCACATCACCGACGAAATCAAGCGTCGCATCATCAAGGGTGCCGGCGATGCCGACGTGGCCCTGGTGGAGATCGGCG‑GTACCGTGGGTGATATCGAGTCGCAGCCGTTCCTCGAGGCGATTCGCCAGCTGCGTGTCg                                                                                                            >  6:272821/1‑147 (MQ=255)                                        aGGTCATCCCGCACATCACCGACGAAATCAAGCGTCGCATCATCAAGGGTGCCGGCGATGCCGACGTGGCCCTGGTGGAGATCGGCG‑GTACCGTGGGTGATATCGAGTCGCAGCCGTTCCTCGAGGCGATTCGCCAGCTGCGTGTCg                                                                                                            >  2:15779/1‑147 (MQ=255)                                           tCATCCCGCACATCACCGACGAAATCAAGCGTCGCATCATCAAGGGTGCCGGCGATGCCGACGTGGCCCTGGTGGAGATCGGCG‑GTACCGTGGGTGATATCGAGTCGCAGCCGTTCCTCGAGGCGATTCGCCAGCTGCGTGTCGAAGTg                                                                                                       >  3:212304/1‑149 (MQ=255)                                               cccGCACATCACCGACGAAATCAAGCGTCGCATCATCAAGGGTGCCGGCGATGCCGACGTGGCCCTGGTGGAGATCGGCG‑GTACCGTGGGTGATATCGAGTCGCAGCCGTTCCTCGAGGCGATTCGCCAGCTGCGTGTCGAAGTGGGCt                                                                                                   >  3:189116/1‑149 (MQ=255)                                                ccgagtgctgggtcggcttggtcttggtttcgccagcggtggcgatgtacgggaccagggtcaggtgcatcagcatggcacgcttggagcccacttcgacaCGCAGCCGTTCCTCGAGGCGATTCGCCAGCTGCGTGTCGaa                                                                                                          <  8:138820‑M1/41‑1 (MQ=255)                                                ccgagtgctgggtcggcttggtcttggtttcgccagcggtggcgatgtacgggaccagggtcaggtgcatcagcatggcacgcttggagcccacttcgacaCGCAGCCGTTCCTCGAGGCGATTCGCCAGCTGCGTGTCGaa                                                                                                          >  7:138820‑M1/102‑142 (MQ=255)                                                 cGCACATCACCGACGAAATCAAGCGTCGCATCATCAAGGGTGCCGGCGATGCCGACGTGGCCCTGGTGGAGATCGGCG‑GTACCGTGGGTGATATCGAGTCGCAGCCGTTCCTCGAGGCGATTCGCCAGCTGCGTGTCGAAGTGGGCTc                                                                                                  >  2:291424/1‑148 (MQ=255)                                                   cacaTCACCGACGAAATCAAGCGTCGCATCATCAAGGGTGCCGGCGATGCCGACGTGGCCCTGGTGGAGATCGGCG‑GTACCGTGGGTGATATCGAGTCGCAGCCGTTCCTCGAGGCGATTCGCCAGCTGCGTGTCGAAGTGGGCTCCaa                                                                                               <  1:179157/149‑1 (MQ=255)                                                       tCACCGACGAAATCAAGCGTCGCATCATCAAGGGTGCCGGCGATGCCGACGTGGCCCTGGTGGAGATCGGCG‑GTACCGTGGGTGATATCGAGTCGCAGCCGTTCCTCGAGGCGATTCGCCAGCTGCGTGTCGAAGTGGGCTCCAAGCGt                                                                                           <  3:229341/149‑1 (MQ=255)                                                                      aGCGTCGCATCATCAAGGGTGCCGGCGATGCCGACGTGGCCCTGGTGGAGATCGGCG‑GTACCGTGGGTGATATCGAGTCGCAGCCGTTCCTCGAGGCGATTCGCCAGCTGCGTGTCGAAGTGGGCTCCAAGCGTGCCATGCTGATGCAc                                                                            <  7:213191/149‑1 (MQ=255)                                                                       gCGTCGCATCATCAAGGGTGCCGGCGATGCCGACGTGGCCCTGGTGGAGATCGGCG‑GTACCGTGGGTGATATCGAGTCGCAGCCGTTCCTCGAGGCGATTCGCCAGCTGCGTGTCGAAGTGGGCTTCAAGCGTGCCATGCTGATGCAcc                                                                           <  2:170660/149‑1 (MQ=255)                                                                       gCGTCGCATCATCAAGGGTGCCGGCGATGCCGACGTGGCCCTGGTGGAGATCGGCG‑GTACCGTGGGTGATATCGAGTCGCAGCCGTTCCTCGAGGCGATTCGCCAGCTGCGTGTCGAAGTGGGCTCCAAGCGTGCCATGCTGATGCAcc                                                                           >  7:193002/1‑149 (MQ=255)                                                                                  tcaAGGGTGCCGGCGATGCCGACGTGGCCCTGGTGGAGATCGGCG‑GTACCGTGGGTGATATCGAGTCGCAGCCGTTCCTCGAGGCGATTCGCCAGCTGCGTGTCGAAGTGGGCTCCAAGCGTGCCATGCTGATGCACCTGACCCTGGTc                                                                >  6:196032/1‑149 (MQ=255)                                                                                  tcaAGGGTGCCGGCGATGCCGACGTGGCCCTGGTGGAGATCGGCG‑GTACCGAGGGTGATATCGAGTCGCAGCCGTTCCTCGAGGCGATTCGCCAGCTGCGTGTCGAAGTGGGCTCCAAGCGTGCCATGCTGATGCCCCTGACCCTGGTc                                                                >  5:198080/1‑149 (MQ=255)                                                                                    aaGGGTGCCGGCGATGCCGACGTGGCCCTGGTGGAGATCGGCG‑GTACCGTGGGTGATATCGAGTCGCAGCCGTTCCTCGAGGCGATTCGCCAGCTGCGTGTCGAAGTGGGCTCCAAGCGTGCCATGCTGATGCACCTGACCCTGGTccc                                                              <  1:291424/149‑1 (MQ=255)                                                                                      gggTGCCGGCGATGCCGACGTGGCCCTGGTGGAGATCGGCG‑GTACCGTGGGTGATATCGAGTCGCAGCCGTTCCTCGAGGCGATTCGCCAGCTGCGTGTCGAAGTGGGCTCCAAGCGTGCCATGCTGATGCACCTGACCCTGGTCCCg                                                             >  1:307423/1‑148 (MQ=255)                                                                                      gggTGCCGGCGATGCCGACGTGGCCCTGGTGGAGATCGGCG‑GTACCGTGGGTGATATCGAGTCGCAGCCGTTCCTCGAGGCGATTCGCCAGCTGCGTGTCGAAGTGGGCTCCAAGCGTGCCATGCTGATGCACCTGACCCTGGTCCCGt                                                            <  8:193002/149‑1 (MQ=255)                                                                                          gCCGGCGCTGCCGACGTGGCCCTGGTGGAGATCGGCG‑GTACCGTGTGTGATATCTAGTCGCAGCCGTTCCTCGAGGCGATTCGCCAGCTGCGTGTCGAAGTGGGCTCCAAGCGTTCCATGCTGATGCACCTGACCCTGGTCCCGTACAt                                                        <  6:198080/149‑1 (MQ=255)                                                                                           ccGGCGATGCCGACGTGGCCCTGGTGGAGATCGGCG‑GTACCGTGGGTGATATCGAGTCGCAGCCGTTCCTCGAGGCGATTCGCCAGCTGCGTGTCGAAGTGGGCTCCAAGCGTGCCATGCTGATGCACCTGACCCTGGTCCCGTACATc                                                       >  2:79910/1‑149 (MQ=255)                                                                                               cGATGCCGACGTGGCCCTGGTGGAGATCGGCG‑GTACCGTGGGTGATATCGAGTCGCAGCCGTTCCTCGAGGCGATTCGCCAGCTGCGTGTCGAAGTGGGCTCCAAGCGTGCCATGCTGATGCACCTGACCCTGGTCCCGTACATCGCCa                                                   <  2:6980/149‑1 (MQ=255)                                                                                                       aCGTGGCCCTGGTGGAGATCGGCG‑GTACCGTGGGTGATATCGAGTCGCAGCCGTTCCTCGAGGCGATTCGCCAGCTGCGTGTCGAAGTGGGCTCCAAGCGTGCCATGCTGATGCACCTGACCCTGGTCCCGTACATCGCCACCGCTGGc                                           <  4:189116/149‑1 (MQ=255)                                                                                                       aCGTGGCCCTGGTGGAGATCGGCG‑GTACCGTGGGTGATATCGAGTCGCAGCCGTTCCTCGAGGCGATTCGCCAGCTGCGTGTCGAAGTGGGCTCCAAGCGTGCCATGCTGATGCACCTGACCCTGGTCCCGTACATCGCCACCGCTGGc                                           <  5:272821/149‑1 (MQ=255)                                                                                                            gCCCTGGTGGAGATCGGCG‑GTACCGTGGGTGATATCGAGTCGCAGCCGTTCCTCGAGGCGATTCGCCAGCTGCGTGTCGAAGTGGGCTCCAAGCGTGCCATGCTGATGCACCTGACCCTGGTCCCGTACATCGCCACCGCTGGCGAAac                                      >  3:48691/1‑149 (MQ=255)                                                                                                            gCCCTGGTGGAGATCGGCG‑GTAACGTGGGTGATATAGAGTCGCAGCCGTTCCTCGAGGCGATTCGCCAGCTGCGTGTCGAAGTGGGCTCCAAGCGTGCCATGCTGATGCACCTGACCCTGGTCCCGTACATCGCCACCGCTGGCGCAac                                      >  2:40672/1‑149 (MQ=255)                                                                                                             cccTGGTGGAGATCGGCG‑GTACCGTGGGTGATATCGAGTCGCAGCCGTTCCTCGAGGCGATTCGCCAGCTGCGTGTCGAAGTGGGCTCCAAGCGTGCCATGCTGATGCACCTGACCCTGGTCCCGTACATCGCCACCGCTGGCGAAacc                                     <  1:216192/149‑1 (MQ=255)                                                                                                              ccTGGTGGAGATCGGCG‑GTACCGTGGGTGATATCGAGTCGCAGCCGTTCCTCGAGGCGATTCGCCAGCTGCGTGTCGAAGTGGGCTCCAAGCGTGCCATGCTGATGCACCTGACCCTGGTCCCGTACATCGCCACCGCTGGCGAAacc                                     >  2:250978/1‑148 (MQ=255)                                                                                                               cTGGTGGAGATCGGCG‑GTACCGTGGGTGATATCGAGTCGCAGCCGTTCCTCGAGGCGATTCGCCAGCTGCGTGTCGAAGTGGGCTCCAAGCGTGCCATGCTGATGCACCTGACCCTGGTCCCGTACATCGCCACCGCTGGCGAAaccaa                                   <  5:196032/149‑1 (MQ=255)                                                                                                                  gtggAGATCGGCG‑GTACCGTGGGTGATATCGAGTCGCAGCCGTTCCTCGAGGCGATTCGCCAGCTGCGTGTCGAAGTGGGCTCCAAGCGTGCCATGCTGATGCACCTGACCCTGGTCCCGTACATCGCCACCGCTGGCGAAaccaag                                  <  2:272396/147‑1 (MQ=255)                                                                                                                   tggAGATCGGCG‑GTACCGTGGGTGATATCGAGTCGCAGCCGTTCCTCGAGGCGATTCGCCAGCTGCGTGTCGAAGTGGGCTCCAAGCGTGCCATGCTGATGCACCTGACCCTGGTCCCGTACATCGCCACCGCTGGCGAAaccaagac                                >  2:100255/1‑148 (MQ=255)                                                                                                                   tggAGATCGGCG‑GTACAGTGGGTGATATCGAGTCGCAGCCGTTCCTCGAGGCGATTCGCCAGCTGCGTGTCGAAGTGGGCTCCAAGCGTGCCATGCTGATGCACCTGACCCTGGTCCCGTACATCGCCACCGCTGGCGAAaccaagac                                >  1:148109/1‑148 (MQ=255)                                                                                                                      agaTCGGCG‑GTACCGTGGGTGATATCGAGTCGCAGCCGTTCCTCGAGGCGATTCGCCAGCTGCGTGTCGAAGTGGGCTCCAAGCGTGCCATGCTGATGCACCTGACCCTGGTCCCGTACATCGCCACCGCTGGCGAAaccaagaccaag                            <  4:48691/149‑1 (MQ=255)                                                                                                                           ggcg‑gTACCGTGGGTGATATCGAGTCGCAGCCGTTCCTCGAGGCGATTCGCCAGCTGCGTGTCGAAGTGGGCTCCAAGCGTGCCATGCTGATGCACCTGACCCTGGTCCCGTACATCGCCACCGCTGGCGAAACCAAGACCAAGCCGa                        <  1:15779/148‑1 (MQ=255)                                                                                                                                          tGATATCGAGTCGCAGCCGTTCCTCGAGGCGATTCGCCAGCTGCGTGTCGAAGTGGGCTCCAAGCGTGCCATGCTGATGCACCTGACCCTGGTCCCGTACATCGCCACCGCTGGCGAAACCAAGACCAAGCCGACCCAGCACTCGGTc          >  1:86365/1‑148 (MQ=255)                                                                                                                                             tatCGAGTCGCAGCCGTTCCTCGAGGCGATTCGCCAGCTGCGTGTCGAAGTGGGCTCCAAGCGTGCCATGCTGATGCACCTGACCCTGGTCCCGTACATCGCCACCGCTGGCGAAACCAAGACCAAGCCGACCCAGCACTCGGTCAAg       <  1:250978/148‑1 (MQ=255)                                                                                                                                                 gAGTCGCAGCCGTTCCTCGAGGCGATTCGCCAGCTGCGTGTCGAAGTGGGCTCCAAGCGTGCCATGCTGATGCACCTGACCCTGGTCCCGTACATCGCCACCGCTGGCGAAACCAAGACCAAGCCGACCCAGCACTCGGTCAAGGAGCt  >  2:220750/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                 GCAAAGAGCGTCGTGGTGATTATCTGGGCGCGACCATCCAGGTCATCCCGCACATCACCGACGAAATCAAGCGTCGCATCATCAAGGGTGCCGGCGATGCCGACGTGGCCCTGGTGGAGATCGGCG‑GTACCGTGGGTGATATCGAGTCGCAGCCGTTCCTCGAGGCGATTCGCCAGCTGCGTGTCGAAGTGGGCTCCAAGCGTGCCATGCTGATGCACCTGACCCTGGTCCCGTACATCGCCACCGCTGGCGAAACCAAGACCAAGCCGACCCAGCACTCGGTCAAGGAGCT  >  NC_002947/1806616‑1806907

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.