New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2014482	34 (0.650)	3 (0.060)	3/254	NT	8.6%	coding (1006/1443 nt)	PP_1794	hypothetical protein
	?	NC_002947	= 2014522	31 (0.620)					coding (966/1443 nt)	PP_1794	hypothetical protein

AGCTTCGCGACCCAGGGCAGCTTCGTACAGGCTTTCAACGAAGGTACCGTTCGACGCATCCAGTGCCTGAGCTTCGGCCGAAACCGAGATGGCAGCAGCTACGTCAGCCAGGCTACCGCCGTTGGCCAGCAGGTCGGTCCAGGCGCTGGAAGCGGCGTCATCAGCAGCACCGCGACCCAGCAGGGCCTGGTACAGGT‑CGTTAACGTCATTGGCGTTGTTAACACCCGCGAACTCGGACGAATCCAGCAGGGCATTGGCAACGTCGGTCAGCGAACCACCGTTGTTGACAT  >  NC_002947/2014339‑2014628                                                                                                                                                |                                                                                                                                                    aGCTTCGCGACCCAGGGCAGCTTCGTACAGGCTTTCAACGAAGGTACCGTTCGACGCATCCAGTGCCTGAGCTTCGGCCGAAACCGAGATGGCAGCAGCTACGTCAGCCAGGCTACCGCCGTTGGCCAGCAGGTCGGTCCAGGCGCTg                                                                                                                                                 <  2:170365/148‑1 (MQ=255)     tCGCGACCCAGGGCAGCTTCGTACAGGCTTTCAACGAAGGTACCGTTCGACGCATCCAGTGCCTGAGCTTCGGCCGAAACCGAGATGGCAGCAGCTACGTCAGCCAGGCTACCGCCGTTGGCCAGCAGGTCGGTCCAGGCGCTGGAAgc                                                                                                                                            >  4:258397/1‑149 (MQ=255)      cgcgACCCAGGGCAGCTTCGTACAGGCTTTCAACGAAGGTACCGTTCGACGCATCCAGTGCCTGAGCTTCGGCCGAAACCGAGATGGCAGCAGCTACGTCAGCCAGGCTACCGCCGTTGGCCAGCAGGTCGGTCCAGGCGCTGGAAgc                                                                                                                                            <  4:97272/148‑1 (MQ=255)      cgcgACCCAGGGCAGCTTCGTACAGGCTTTCAACGAAGGTACCGTTCGACGCATCCAGTGCCTGAGCTTAGGCCGAAACCGAGATGGCAGCAGCTACGTCAGCCAGGCTAACGCCGTTGGCCAGCAGGTCGGTCCAGGCGCTGGAAgc                                                                                                                                            <  2:60347/148‑1 (MQ=255)            ccAGGGCAGCTTCGTACAGGCTTTCAACGAAGGTACCGTTCGACGCATCCAGTGCCTGAGCTTCGGCCGAAACCGAGATGGCAGCAGCTACGTCAGCCAGGCTACCGCCGTTGGCCAGCAGGTCGGTCCAGGCGCTGGAAGCGGCGtca                                                                                                                                     >  6:123043/1‑149 (MQ=255)              aGGGCAGCTTCGTACAGGCTTTCAACGAAGGTACCGTTCGACGCATCCAGTGCCTGAGCTTCGGCCGAAACCGAGATGGCAGCAGCTACGTCAGCCAGGCTACCGCCGTTGGCCAGCAGGTCGGTCCAGGCGCTGGAAGCGGCGtcatc                                                                                                                                   <  5:123043/149‑1 (MQ=255)                ggCAGCTTCGTACAGGCTTTCAACGAAGGTACCGTTCGACGCATCCAGTGCCTGAGCTTCGGCCGAAACCGAGATGGCAGCAGCTACGTCAGCCAGGCTACCGCCGTTGGCCAGCAGGTCGGTCCAGGCGCTGGAAGCGGCGTCATcag                                                                                                                                 <  2:110469/149‑1 (MQ=255)                     cTTCGTACAGGCTTTCAACGAAGGTACCGTTCGACGCATCCAGTGCCTGAGCTTCGGCCGAAACCGAGATGGCAGCAGCTACGTCAGCCAGGCTACCGCCGTTGGCCAGCAGGTCGGTCCAGGCGCTGGAAGCGGCGTCATCAgcagca                                                                                                                            >  2:81642/1‑149 (MQ=255)                          tACAGGCTTTCAACCAAGGTACCGATCGACGCATCCAGTGCCTGAGCTTCGGCGGAAACCGAGATGGCAGCAGCTACGTCAGCCAGGCTACCGCCGTTGGCCCGCAGGTCGGTCCAGGCGCTGGAAGCCGCGTCAGCAGCAGCACcgc                                                                                                                        >  2:294398/1‑148 (MQ=255)                              ggCTTTCAACGAAGGTACCGTTCGACGCATCCAGTGCCTGAGCTTCGGCCGAAACCGAGATGGCAGCAGCTACGTCAGCCAGGCTACCGCCGTTGGCCAGCAGGTCGGTCCAGGCGCTGGAAGCGGCGTCATCAGCAGCACCGCGAcc                                                                                                                    >  5:122171/1‑148 (MQ=255)                                      aCGAAGGTACCGTTCGACGCATCCAGTGCCTGAGCTTCGGCCGAAACCGAGATGGCAGCAGCTACGTCAGCCAGGCTACCGCCGTTGGCCAGCAGGTCGGTCCAGGCGCTGGAAGCGGCGTCATCAGCAGCACCGCGACCCAGCAGGgc                                                                                                           <  2:256674‑M2/149‑3 (MQ=255)                                      aCGAAGGTACCGTTCGACGCATCCAGTGCCTGAGCTTCGGCCGAAACCGAGATGGCAGCAGCTACGTCAGCCAGGCTACCGCCGTTGGCCAGCAGGTCGGTCCAGGCGCTGGAAGCGGCGTCATCAGCAGCACCGCGACCCAGCAGGgc                                                                                                           <  2:149494‑M2/149‑3 (MQ=255)                                       cGAAGGTACCGTTCGACGCATCCAGTGCCTGAGCTTCGGCCGAAACCGAGATGGCAGCAGCTACGTCAGCCAGGCTACCGCCGTTGGCCAGCAGGTCGGTCCAGGCGCTGGAAGCGGCGTCATCAGCAGCACCGCGACCCAGCAGGgcc                                                                                                          <  7:47054‑M2/149‑4 (MQ=255)                                         aaGGTACCGTTCGACGCATCCAGTGCCTGAGCTTCGGCCGAAACCGAGATGGCAGCAGCTACGTCAGCCAGGCTACCGCCGTTGGCCAGCAGGTCGGTCCAGGCGCTGGAAGCGGCGTCATCAGCAGCACCGCGACCCAGCAGGgcctg                                                                                                        >  2:9544‑M2/1‑144 (MQ=255)                                           ggTACTGTTCGACGCATCCAGTGCCTGAGCTTCGGCCGAAACCGAGATGGCAGCAGCTACGTCAGCCAGGCTACCGCCGTTGGCCAGCAGGTCGGTCCAGGCcctgctgggtcgcggtgctgctgatgacgccgcttccagcgcctgga                                                                                                      <  5:247602‑M1/149‑48 (MQ=255)                                                cGTTCGACGCATCCAGTGCCTGAGCTTCGGCCGAAACCGAGATGGCAGCAGCTACGTCAGCCAGGCTACCGCCGTTGGCCAGCAGGTCGGTCCAGGGGCTGGAAGCGGCGTCATCAGCAGCACCGCGACCCAGCAGGGCCTGGTACAgg                                                                                                 <  8:47054/149‑1 (MQ=255)                                                cGTTCGACGCATCCAGTGCCTGAGCTTCGGCCGAAACCGAGATGGCAGCAGCTACGTCAGCCAGGCTACCGCCGTTGGCCAGCAGGTCGGTCCAGGCGCTGGAAGCGGCGTCATCAGCAGCACCGCGACCCAGCAGGGCCTGGTACAgg                                                                                                 <  6:300750/149‑1 (MQ=255)                                                    cGACGCATCCAGTGCCTGAGCTTCGGCCGAAACCGAGATGGCAGCAGCTACGTCAGCCAGGCTACCGCCGTTGGCCAGCAGGTCGGTCCAGGCGCTGGAAGCGGCGTCATCAGCAGCACCGCGACCCAGCAGGGCCTGGTACAGGT‑CGt                                                                                            >  3:51198/1‑149 (MQ=255)                                                          aTCCAGTGCCTGAGCTTCGGCCGAAACCGAGATGGCAGCAGCTACGTCAGCCAGGCTACCGCCGTTGGCCAGCAGGTCGGTCCAGGCGCTGGAAGCGGCGTCATCAGCAGCACCGCGACCcagca                                                                                                               >  5:269729/1‑125 (MQ=255)                                                          aTCCAGTGCCTGAGCTTCGGCCGAAACCGAGATGGCAGCAGCTACGTCAGCCAGGCTACCGCCGTTGGCCAGCAGGTCGGTCCAGGCGCTGGAAGCGGCGTCATCAGCAGCACCGCGACCcagca                                                                                                               <  6:269729/125‑1 (MQ=255)                                                             cAGTGCCTGAGCTTCGGCCGAAACCGAGATGGCAGCAGCTACGTCAGCCAGGCTACCGCCGTTGGCCAGCAGGTCGGTCCAGGCGCTGGAAGCGGCGTCATCAGCAGCACCGCGACCCAGCAGGGCCTGGTACAGGT‑CGTTAACGCCaa                                                                                   >  6:151729/1‑148 (MQ=255)                                                              aGTGCCTGAGCTTCGGCCGAAACCGAGATGGCAGCAGCTACGTCAGCCAGGCTACCGCCGTTGGCCAGCAGGTCGGTCCAGGCcctgctgggtcgcggtgctgctgatgacgccgcttccagcgcctggac                                                                                                     >  3:176978‑M1/1‑83 (MQ=255)                                                              aGTGCCTGAGCTTCGGCCGAAACCGAGATGGCAGCAGCTACGTCAGCCAGGCTACCGCCGTTGGCCAGCAGGTCGGTCCAGGCcctgctgggtcgcggtgctgctgatgacgccgcttccagcgcctggac                                                                                                     <  4:176978‑M1/131‑49 (MQ=255)                                                                  ccTGAGCTTCGGGCGAAACCGAGATGGCAGCAGCTACGTCAGCCTGGCTACCGCCGTTGGCCAGCAGGTCGGTCCAGGCGCTGGAAGCGGCGGCATCAGCAGCACCGCGACCCAGCAGGGCCTGGTACAGGT‑CGTTAACGTCATTGGc                                                                               <  1:294398/148‑1 (MQ=255)                                                                       gCTTCGGCCGAAACCGAGATGGCAGCAGCTACGTCAGCCAGGCTACCGCCGTTGGCCAGCAGGTCGGTCCAGGCGCTGGAAGCGGCGTCATCAGCAGCACCGCGACCCAGCAGGGCCTGGTACAGGT‑CGTTAACGTCATTGGCgttgtt                                                                         <  7:87012/149‑1 (MQ=255)                                                                       gCTTCGGCCGAAACCGAGATGGCAGCAGCTACGTCAGCCAGGCTACCGCCGTTGGCCAGCAGGTCGGTCCAGGCGCTGGAAGCGGCGTCATCAGCAGCACCGCGACCCAGCAGGGCCTGGTACAGGT‑CGTTAACGTCATTGGCgttgt                                                                          >  7:293166/1‑148 (MQ=255)                                                                        cTTCGGCCGAAACCGAGATGGCAGCAGCTACGTCAGCCAGGCTACCGCCGTTGGCCAGCAGGTCGGTCCAGGCGCTGGAAGCGGCGTCATCAGCAGCACCGCGACCCAGCAGGGCCTGGTACAGGT‑CGTTAACGTCATTGGCGTTGTTa                                                                        <  1:81642/149‑1 (MQ=255)                                                                        cTTCGGCCGAAACCGAGATGGCAGCAGCTACGTCAGCCAGGCTACCGCCGTTGGCCAGCAGGTCGGTCCAGGCGCTGGAAGCGGCGTCATCAGCAGCACCGCGACCCAGCAGGGCCTGGTACAGGT‑CGTTAACGCCAATGACgttaacg                                                                        <  5:151729/149‑5 (MQ=255)                                                                           cGGCCGAAACCGAGATGGCAGCAGCTACGTCAGCCAGGCTACCGCCGTTGGCCAGCAGGTCGGTCCAGGCGCTGGAAGCGGCGTCATCAGCAGCACCGCGACCCAGCAGGGCCTGGTACAGGT‑CGTTAACGTCATTGGCGTTGTTAac                                                                      <  3:258397/148‑1 (MQ=255)                                                                                   aCCGAGATGGCAGCAGCTACGTCAGCCAGGCTACCGCCGTTGGCCAGCAGGTCGGTCCAGGCGCTGGAAGCGGCGACATCAGCAGCACCGCGACCCAGCAGGGCCTGGTACAGGT‑CGTTAACGTCATTGGCGTTGTTAACACCCGCGaa                                                             >  1:159302/1‑149 (MQ=255)                                                                                     cGAGATGGCAGCAGCTACGTCAGCCAGGCTACCGCCGTTGGCCAGCAGGTCGGTCCAGGCGCTGGAAGCGGCGTCATCCCCAGCACCGCCACCCAGCAGGGCCGGGTACAGGT‑CGTTAACGTAATTGGCGTTGTTTACACCCGCGAACt                                                           >  2:278216/1‑149 (MQ=255)                                                                                          tGGCAGCAGCTACGTCAGCCAGGCTACCGCCGTTGGCCAGCAGGTCGGTCCAGGCGCTGGAAGCGGCGTCATCAGCAGCACCGCGACCCAGCAGGGCCTGGTACAGGT‑CGTTAACGTCATTGGCGTTGTTAACACCCGCGAACTCGGAc                                                      <  4:51198/149‑1 (MQ=255)                                                                                          tGGCAGCAGCTACGTCAGCCAGGCTACCGCCGTTGGCCAGCAGGTCGGTCCAGGCGCTGGAAGCGGCGTCATCAGCAGCACCGCGACCCAGCAGGGCCTGGTACAGGT‑CGTTAACGTCATTGGCGTTGTTAACACCCGCGAACTCGGAc                                                      <  7:1404/149‑1 (MQ=255)                                                                                             cagcagCTACGTCAGCCAGGCTACCGCCGTTGGCCAGCAGGTCGGTCCAGGCGCTGGAAGCGGCGTCATCAGCAGCACCGCGACCCAGCAGGGCCTGGTACAGGT‑CGTTAACGTCATTGGCGTTGTTAACACCCGCGAACTCGGACGaa                                                   <  6:122171/149‑1 (MQ=255)                                                                                                             cAGGCTACCGCCGTTGGCCAGCAGGTCGGTCCAGGCGCTGGAAGCGGCGTCATCAGCAGCACCGCGACCCAGCAGGGCCTGGTACAGGT‑CGTTAACGTCATTGGCGTTGTTAACACCCGCGAACTCGGACGAATCCAGCAGGGCATTgg                                   <  1:149494/149‑1 (MQ=255)                                                                                                              aGGCTACCGCCGTTGGCCAGCAGGTCGGTCCAGGCGCTGGAAGCGGCGTCATCAGCAGCACCGCGACCCAGCAGGGCCTGGTACAGGT‑CGTTAACGTCATTGGCGTTGTTAACACCCGCGAACTCGGACGAATCCAGCAGGGCATTgg                                   >  3:282857/1‑148 (MQ=255)                                                                                                              aGGCTACCGCCGTTGGCCAGCAGGGCGGTCCAGGCGCTGGAAGCGGCGTCATCAGCAGCACCGCGACCCAGCAGGGCCTGGTACAGGTCCCTTAACGTCATTGGCGTTGTTAACACCCGCGAACTCGGACGAATCCAGCAGGGCATTgg                                   <  1:256674/149‑1 (MQ=255)                                                                                                                 cggtagccgTTGGCCAGCAGGTCGGTCCAGGCGCTGGAAGCGGCGTCATCAGCAGCACCGCGACCCAGCAGGGCCTGGTACAGGT‑CGTTAACGTCATTGGCGTTGTTAACACCCGCGAACTCGGACGAATCCAGCAGGGCATTGGCAAc                               >  5:155181/6‑149 (MQ=255)                                                                                                                     cgccgTTGGCCAGCAGGTCGGTCCAGGCGCTGGAAGCGGCGTCATCAGCAGCACCGCGACCCAGCAGGGCCTGGTACAGGT‑CGTTAACGTCATTGGCGTTGTTAACACCCGCGAACTCGGACGAATCCAGCAGGGCATTGGCAACGTCg                           >  3:258714/1‑149 (MQ=255)                                                                                                                                    ggtcggtcCAGGCGCTGGAAGCGGCGTCATCAGCAGCACCGAGACCCAGCAGGGCCTGGTACACGT‑CGTTAACGTCATTGGCGTTGTTAACACCCGCGAACTCGGACGAATCCAGCAGCGGATTGGCAACGTCGGTCAGCTAACCACCg            >  7:108199/1‑149 (MQ=255)                                                                                                                                         gtcCAGGCGCTTGAAGCGGCGTCATCAGCACCACCGCGACGCAGCAGGGCCTGGTACAGGG‑CGTTAACGTCAATGGCGTTGTTAACACCCGCTAACTCGGACGAATCCAGCAGGGCATTGGCAACGTCGGTCAGCGAACCACCgttgtt       <  8:293166/149‑1 (MQ=255)                                                                                                                                         gtcCAGGCGCTGGAAGCGGCGTCATCAGCAGCACCGCGACCCAGCAGGgcctggaccgacctgctggccaacggcggtagcctggctgacgtagctgctgccatctcggtttcggccgaagctcaggcact                          >  3:176978‑M2/1‑48 (MQ=255)                                                                                                                                         gtcCAGGCGCTGGAAGCGGCGTCATCAGCAGCACCGCGACCCAGCAGGgcctggaccgacctgctggccaacggcggtagcctggctgacgtagctgctgccatctcggtttcggccgaagctcaggcact                          <  4:176978‑M2/131‑84 (MQ=255)                                                                                                                                          tcCAGGCGCTGGAAGCGGCGTCATCAGCAGCACCGCGACCCAGCAGGgcctggaccgacctgctggccaacggcggtagcctggctgacgtagctgctgccatctcggtttcggccgaagctcaggcactggatgcgtcgaacagtacc       <  5:247602‑M2/149‑103 (MQ=255)                                                                                                                                          tcCAGGCGCTGGAAGCGGCGTCATCAGCAGCACCGCGACCCAGCAGGGCCTGGTACAGGT‑CGTTAACGTCATTGGCGTTGTTAACACCCGCGAACTCGGACGAATCCAGCAGGGCATTGGCAACGTCGGTCAGCGAACCACCgttgtt       >  5:14359/1‑148 (MQ=255)                                                                                                                                            cAGGCcctgctgggtcgcggtgctgctgatgacgccgcttccagcgcctggaccgacctgctggccaacggcggtagcctggctgacgtagctgctgccatctcggtttcggccgaagctcaggcactggatgcgtcgaacggtacctt     >  2:9544‑M1/1‑5 (MQ=255)                                                                                                                                            cAGGCGCTGGAAGCGGCGTCATCAGCAGCACCGCGACCCAGCAGGGCCTGGTACAGGT‑CGTTAACGTCATTGGCGTTGTTAACACCCGCGAACTCGGACGAATCCAGCAGGGCATTGGCAACGTCGGTCAGCGAACCACCGTTGTTGa     >  2:26121/1‑148 (MQ=255)                                                                                                                                              ggCcctgctgggtcgcggtgctgctgatgacgccgcttccagcgcctggaccgacctgctggccaacggcggtagcctggctgacgtagctgctgccatctcggtttcggccgaagctcaggcactggatgcgtcgaacggtaccttcg   <  7:47054‑M1/149‑147 (MQ=255)                                                                                                                                               gCcctgctgggtcgcggtgctgctgatgacgccgcttccagcgcctggaccgacctgctggccaacggcggtagcctggctgacgtagctgctgccatctcggtttcggccgaagctcaggcactggatgcgtcgaacggtaccttcgt  <  2:256674‑M1/149‑148 (MQ=255)                                                                                                                                               gCcctgctgggtcgcggtgctgctgatgacgccgcttccagcgcctggaccgacctgctggccaacggcggtagcctggctgacgtagctgctgccatctcggtttcggccgaagctcaggcactggatgcgtcgaacggtaccttcgt  <  2:149494‑M1/149‑148 (MQ=255)                                                                                                                                                |                                                                                                                                                    AGCTTCGCGACCCAGGGCAGCTTCGTACAGGCTTTCAACGAAGGTACCGTTCGACGCATCCAGTGCCTGAGCTTCGGCCGAAACCGAGATGGCAGCAGCTACGTCAGCCAGGCTACCGCCGTTGGCCAGCAGGTCGGTCCAGGCGCTGGAAGCGGCGTCATCAGCAGCACCGCGACCCAGCAGGGCCTGGTACAGGT‑CGTTAACGTCATTGGCGTTGTTAACACCCGCGAACTCGGACGAATCCAGCAGGGCATTGGCAACGTCGGTCAGCGAACCACCGTTGTTGACAT  >  NC_002947/2014339‑2014628

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.