New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2085881 =	NA (NA)	5 (0.100)	4/260	NT	NA	intergenic (+590/‑5)	PP_1864/PP_1865	hypothetical protein/transposase
	?	NC_002947	2085920 =	NA (NA)					coding (35/1302 nt)	PP_1865	transposase

CGATGACGACGCCAACTCACCTTTCCGCCCTTACGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGCGTAATGGCCAAACTTGCCTTGGAGC  >  NC_002947/2085740‑2085907                                                                                                                                              |                           cGATGACGACGCCAACTCACCTTTCCGCCCTTACGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGCGTAATg                     <  3:5629/149‑1 (MQ=255) cGATGACGACGCCAACTCACCTTTCCGCCCTTACGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGCGTAATg                     >  6:256638/1‑149 (MQ=255) cGATGACGACGCCAACTCACCTTTCCGCCCTTACGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGAGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGCGTAATg                     >  2:306672/1‑149 (MQ=255)  gATGACGACGCCAACTCACCTTTCCGCCCTTACGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGCGTAATgg                    >  4:225736/1‑149 (MQ=255)          cgCCAACTCACCTTTCCGCCCTTACGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGCGTAATGGCCAAACtt            <  5:48921/149‑1 (MQ=35)             cAACTCACCTTTCCGCCCTTACGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGCGTAATGGCCAAACTTGcc         <  3:32379/149‑1 (MQ=33)              aaCTCACCTTTCCGCCCTTACGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGCGTAATGGCCAAACTTGCCt        >  2:242437/1‑149 (MQ=32)               aCTCACCTTTCCGCCCTTACGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGCGTAATGGCCAAACTTGCCtt       <  4:163710/149‑1 (MQ=32)               aCTCACCTTTCCGCCCTTACGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGCGTAATGGCCAAACTTGCCtt       <  7:999/149‑1 (MQ=32)                    ccTTTCCGCCCTTACGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGCGTAATGGCCAAACTTGCCTTGGAGc  <  5:197479/149‑1 (MQ=32)                    ccTTTCCGCCCTTACGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGAGGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGCGTAATGGCCAAACTTGCCTTGGAGc  >  7:239072/1‑149 (MQ=17)                                                                                                                                              |                           CGATGACGACGCCAACTCACCTTTCCGCCCTTACGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGCGTAATGGCCAAACTTGCCTTGGAGC  >  NC_002947/2085740‑2085907

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.