| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2099982 | 13 (0.250) | 6 (0.140) | 5/220 | NT | 27.4% | intergenic (‑93/‑112) | PP_1875/PP_1876 | two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein |
| ? | NC_002947 | = 2100031 | 21 (0.490) | intergenic (‑142/‑63) | PP_1875/PP_1876 | two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein | |||||
CTTGATATCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACA‑GCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGC > NC_002947/2099836‑2100128 | cTTGATATCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGtt < 3:1961/149‑1 (MQ=255) tGATTTCCTTGTGTCCCTTGCGGGTTTCCCGTTCCTTGCGCTGCGCAATAATGGCGGAATAGCCGGGGGTGGTGGGGGGTCTGTTTGTTATTTTCTGTTTTTCCCCTAGGGGGGGCCGCTGGGCGCCCCTCCGCGGGCTTGCCCGTTc < 4:21252/148‑1 (MQ=255) gAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTa > 1:23876/1‑147 (MQ=255) gTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCATGCCCCTTCCCCCAGGGAAA‑Gc > 7:87657/1‑149 (MQ=255) cGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACA‑GCTTAg > 1:90678/1‑149 (MQ=255) ggTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACA‑GCTTAGCCCCAg < 2:37736/149‑1 (MQ=255) tttCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTGCGCGCCCCTCCGCGGGCTTGCCCGctcccacagggcttgcgttcagcctggg < 3:30103‑M1/149‑29 (MQ=255) cTTGCGCTGGGAAAGCATAGCCGAATAGCCCGGGGTGCTGGTGGGTGTGTCTGTTCTTTTCAGTTTTGCGCCACGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACA‑GCTTAGCCCCAGGCTGAACGCaa < 1:311438/148‑1 (MQ=38) cTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACA‑g > 6:325938/1‑126 (MQ=255) cTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACA‑g < 5:325938/126‑1 (MQ=255) cTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACA‑GCTTAGCCCCAGGCTGAACGCaa < 3:294407/148‑1 (MQ=255) cgctgcgcAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACA‑GCTTAGCCCCAGGCTGAACGCAAGCCCt < 5:235430/149‑1 (MQ=255) gcgcAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGctcccacagggcttgcgttcagcctggggctaagctgtacctgtgg < 1:301530‑M1/149‑47 (MQ=255) gcAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTATCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACA‑GCTTAGCCCCAGGCTGAACGCAAGCCCTGTgg > 8:220635/1‑147 (MQ=255) aaGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACA‑GCTTAGCCCCAGGCTGAAc > 3:115535/1‑132 (MQ=255) aaGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACA‑GCTTAGCCCCAGGCTGAAc < 4:115535/132‑1 (MQ=255) gCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTGCGCGCCCCTCCGCGGGCTTGCCCGctcccacagggcttgcgttcagcctggggctaagctgtacctgtgggaacgg < 1:183144‑M1/149‑53 (MQ=255) cATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTGCGCGCCCCTCCGCGGGCTTGCCCGctcccacagggcttgcgttcagcctggggctaagctgtacctgtgggaacggg < 7:33509‑M1/149‑54 (MQ=255) gCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACA‑GCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGcgggcaa > 2:23876‑M2/1‑141 (MQ=255) gCCGAATAGCCCCGGCTGCTGGTGGGTCTATCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACA‑GCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGcgggcaa > 7:220635‑M2/1‑141 (MQ=255) tgtTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGctcccacagggcttgcgttcagcctggggctaagctgtacctgtgggaacgg > 5:226165‑M1/1‑60 (MQ=255) tgtTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGctcccacagggcttgcgttcagcctggggctaagctgtacctgtgggaacgg < 6:226165‑M1/112‑53 (MQ=255) ggggCCGCTTGGCGCCCCTCCGCGGGCTTTGCCCTTCCCACAGGGAAACGGTTAGCCCCA‑GCGGCAAGCACTGCCAGGGGGGGCCGGCCAGGCCGCCGGGGGGGGCGGCGCCGCCCCCCAAAAAATGAGTTTGTTAAGAttcgggatgt > 6:88362/1‑143 (MQ=255) ttGCCCGctcccacagggcttgcgttcagcctggggctaagctgtacctgtgggaacgggcaagcccgcggaggggcgccaagcggcccccgcttggcgatcaactgaaatgaacagatagacccaccagcagccggggctattcggc > 7:220635‑M1/1‑7 (MQ=255) ttGCCCGctcccacagggcttgcgttcagcctggggctaagctgtacctgtgggaacgggcaagcccgcggaggggcgccaagcggcccccgcttggcgatcaactgaaatgaacagacagacccaccagcagccggggctattcggc > 2:23876‑M1/1‑7 (MQ=255) cccGTTCCCACAGGTACA‑GCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGcgggcaagcccgcggaggggcgcgcagcggcccccgcttggcgatcaactgaaatgaacagacagacccaccagcagccggggctattcggctatg < 7:33509‑M2/149‑97 (MQ=255) ccGTTCCCACAGGTACA‑GCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGcgggcaagcccgcggaggggcgcgcagcggcccccgcttggcgatcaactgaaatgaacagacagacccaccagcagccggggctattcggctatgc < 1:183144‑M2/149‑98 (MQ=255) ccGTTCCCACAGGTACA‑GCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGcgggcaagcccgcggaggggcgccaagcggcccccgcttggcgatcaactgaaatgaaca < 6:226165‑M2/112‑61 (MQ=255) ccGTTCCCACAGGTACA‑GCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGcgggcaagcccgcggaggggcgccaagcggcccccgcttggcgatcaactgaaatgaaca > 5:226165‑M2/1‑52 (MQ=255) gTTCCCACAGGTACA‑GCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAg > 7:260582/1‑107 (MQ=255) gTTCCCACAGGTACA‑GCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAg < 8:260582/107‑1 (MQ=255) | CTTGATATCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACA‑GCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGC > NC_002947/2099836‑2100128 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |